BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63360.1
Length=2655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338119 jgi|Araly1|338119|fgenesh1_pg.C_scaffold_2000218 2259 0.0
Ahg907240 jgi|Araly1|907240|Al_scaffold_0002_321 1138 0.0
> Ahg338119 jgi|Araly1|338119|fgenesh1_pg.C_scaffold_2000218
Length=3012
Score = 2259 bits (1223), Expect = 0.0
Identities = 2175/2614 (83%), Gaps = 148/2614 (6%)
Strand=Plus/Plus
Query 14 TCTCGATACCCTTT-GATCCGT-GTGTAAATAAAGTCTCTCAATGGCTAG-ACATG-AAA 69
|||| ||| ||||| |||| | | || |||||||||||||||||||||| | | | |||
Sbjct 20 TCTCAATA-CCTTTGGATCAATCG-GTGAATAAAGTCTCTCAATGGCTAGAAGA-GAAAA 76
Query 70 GTAAGTTATACTCACAATCTCGAGAAGAATCTCGCAGCTTTGGAGAAAACCATGAAAGAG 129
| | ||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||
Sbjct 77 G-AGGTTATACTCACAATCTCGAAAAGAATCTCACAGCTTTGGAGACAACCATGGAAGAG 135
Query 130 CTCAAGGCTAAGCGGGATGATTTGGAAAGAAGGCTCAAAAGAGAGGAGGCTAGAGGTCTA 189
||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 136 CTCAAGGCTAAGCGGGATGATTTGGAAAGAAAGCTCAGAAGAGAAGAGGATAGAGGTCTA 195
Query 190 CAAAGGCTTTCCGAATTCCAGGTATGGCTTGATAGTGTTGCGACTGTCGAAGACATAA-T 248
|||||||||||||||||||||||||||||| |||| ||||||| || ||||| | || |
Sbjct 196 CAAAGGCTTTCCGAATTCCAGGTATGGCTTAATAGAGTTGCGAAAGTGGAAGATA-AATT 254
Query 249 CATTACTCTTCTTAGAGATAGAA-ATGTTGAAATTCAAAGGCTGTGTCTTTGCCGGTTTT 307
|| || ||| |||| |||| || ||||||||||| |||||||||| ||||| ||||||
Sbjct 255 CAACACCCTTGTTAGTGATA-AAGATGTTGAAATTAAAAGGCTGTGCCTTTGTGGGTTTT 313
Query 308 GCTCTAAGAGTTTAACGA-GGAGCTATCGTTATGGGAAAAGTGTTTTCTTGAGGTTGAGG 366
| ||||||||||| || | |||||||||||| ||||||| ||||||||||| |||| ||
Sbjct 314 GTTCTAAGAGTTT-ACTATCGAGCTATCGTTACGGGAAAAATGTTTTCTTGACGTTG-GG 371
Query 367 -GAGGTTGAGAAACTCAAAGGTGAAGTTTTTGGAGTGATAACCGAGCAAGCTTC-AACAT 424
|||||||||||||||||| || ||| | || || ||| | ||| | || ||||
Sbjct 372 TGAGGTTGAGAAACTCAAAAGTAAAGATATTAAAGAGATTGTTG-CCAAACCTCTAACAC 430
Query 425 CTGCGTTTGAGGAACGACCTCTTCAACCGACAATCGTTGGTCAAGACA-CAATGCTCGAT 483
||| ||| |||||| ||| |||||||||| ||| ||||||||||| | ||||||||||
Sbjct 431 CTGAGTTGGAGGAAAGACGACTTCAACCGATAATTGTTGGTCAAGA-AGCAATGCTCGAG 489
Query 484 AAGGCAG-GGAAACATCTCATGGAAGATGGAGTTGGTATTATGGGTATGTACGGTATGGG 542
|| || | |||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 490 AAAGC-GTGGAAACATCTCATGGAAGATGGAGTTAGTATTATGGGTATGTATGGTATGGG 548
Query 543 CGGTGTAGGGAAGACAACACTTCTCACTCAGCTCTACAATATGTTCAATAAGGATAAG-T 601
|||||||||||||||||| ||| || | ||| || |||||| ||||| ||| || |
Sbjct 549 CGGTGTAGGGAAGACAACGCTTTTCTCACAGATCCACAATAAGTTCAGTAACGA-CCGAC 607
Query 602 GTGGATTTGA-TATTG-GCATTTGGGTTGTCGTGTCTCAAGAGTTTCATGTGGAGAAGGT 659
|||||||||| | ||| | ||||||||||| |||||| ||||||| |||||||||||| |
Sbjct 608 GTGGATTTGACT-TTGTG-ATTTGGGTTGTGGTGTCTAAAGAGTTACATGTGGAGAAGAT 665
Query 660 TCAAGATGAAATCGCTCA-AAAGCTTGGTCTTGGTGGAGATG-AGTGG-ACACAGAAAGA 716
|||||||||||||||||| |||| |||||||||||||||| | ||||| || || |||||
Sbjct 666 TCAAGATGAAATCGCTCAGAAAG-TTGGTCTTGGTGGAGA-GCAGTGGAAC-CAAAAAGA 722
Query 717 TAAAAGTCAAAAGG-GGATTTGTTTATACAATATCTTGAGGGAAAAGAGTTTTGTGTTGT 775
||||| ||| |||| || | |||||| |||| |||| | | |||| || ||||| ||||
Sbjct 723 TAAAAATCAGAAGGCTGA-TCGTTTATTCAATTTCTTAAAGAAAAAAAGATTTGTCTTGT 781
Query 776 TTTTAGATGACATATGGGAAAAGGTGGATTTAGCTGAGATCGGAGTTCCGGATCCAAGAA 835
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |
Sbjct 782 TTTTAGATGACATATGGGAGAAGGTGGAATTAACTGAGATCGGAGTTCCGGATCCAAG-A 840
Query 836 CCA-AAAAAGGACGTAAATTGGCATTTACGACTCGGTCCCAAGAGGTATGTGCACGCATG 894
|| |||||||| |||||||| ||||||| ||||| || || || |||||||| ||||||
Sbjct 841 TCACAAAAAGGATGTAAATTGTCATTTACAACTCGTTCTCAGGAAGTATGTGCGCGCATG 900
Query 895 GGGGTCGAACATCCAATGGAAGTCCAATGCTTGGA-AGAGAATGTGGCATTTGATTTGTT 953
||||| || | |||||||||||| ||||||| || || || || ||||||||||||||
Sbjct 901 GGGGTTAAAGACCCAATGGAAGTCAAATGCTT-GACGGAAAACGTCGCATTTGATTTGTT 959
Query 954 CCAA-AAGAAGGTTGGACAAACAACACTTGGA-AGCGATCCGGGGATCCCCCAACTTGCA 1011
|||| || ||||||||||| | ||||||| || | ||||| || |||||| | ||||||
Sbjct 960 CCAAGAA-AAGGTTGGACAGATAACACTT-GATTGTGATCCAGGAATCCCCGACCTTGCA 1017
Query 1012 AGAATAGTTGCGAA-AAAATGTTGTGGCCTACCATTGGCGCTCAACGTCATAGGCGAGAC 1070
|||| | |||| || |||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1018 AGAACAATTGC-AAGAAAATGTTGTGGCCTACCATTGGCCCTCAACGTCATAGGTGAAAC 1076
Query 1071 CATGTCATGCAA-AAGGACGATACAAGAATGGCGTCACGCTATACATGTTTTGAATTCAT 1129
||||| ||||| || ||| ||||||||||||||||||||| || | ||||| |||||||
Sbjct 1077 AATGTCTTGCAAGAA-GACAATACAAGAATGGCGTCACGCTGTAGAAGTTTTCAATTCAT 1135
Query 1130 ACGCTGCAGAGTTT-ATAGGCATGGAGGATAAGGTTCTTCCGCTTTTGAAGTATAGCTAC 1188
|||||||||||||| || |||||||| |||||| | ||||||||||||||||||||||||
Sbjct 1136 ACGCTGCAGAGTTTGAT-GGCATGGACGATAAGATCCTTCCGCTTTTGAAGTATAGCTAC 1194
Query 1189 GATAACCTTAAGGGGGAGCAA-GTCAAATCGAGTTTGTTGTATTGTGCTTTATATCCAGA 1247
|||| |||||||||||| || |||||||| ||||| ||||||| ||||||| ||||||
Sbjct 1195 GATAGTCTTAAGGGGGAG-AATATCAAATCGTGTTTGCTGTATTGCGCTTTATTTCCAGA 1253
Query 1248 AGATGCGAAAATTCTGAAAGAAGATTTGATAGAGCATTGGATATGCGAGGAAATTATAGA 1307
|||| | | |||||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct 1254 AGATACTAGTATTCTGAAAGAAGAATTGATAGAGTACTGGATATGCGAGGAAATTATAGA 1313
Query 1308 TGGAAGTGAAGGTATAGAAAAGGCTGAGGACAAGGGTTATGAGATTATAGGTTGTCTTGT 1367
|||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||
Sbjct 1314 TGGAAGTGAAGGTATAGAAAGGGCTGAGGACAAGGGTTATGAGATTATCGGTAGTCTTGT 1373
Query 1368 TCGCGCATCATTGTTGATGGAGTGGGATGATGGGGATGGACGACGTGCTGTGTGTATGCA 1427
|||| ||||||||||||||||| ||| | || || ||||| | || ||| ||||||
Sbjct 1374 TCGCTCATCATTGTTGATGGAGGGGGTTAATAGGTTTGGACAAAGTTTTGTCACTATGCA 1433
Query 1428 TGACGTTGTTCGTGAAATGGCCTTATGGATCGCTTCTGAACTGGGAATACAAAAGGAGGC 1487
||| ||||||||||||||||| |||||||| |||||||||||||||| |||||| |||||
Sbjct 1434 TGATGTTGTTCGTGAAATGGCTTTATGGATTGCTTCTGAACTGGGAAAACAAAAAGAGGC 1493
Query 1488 CTTCATTGTGCGTGCAGGTGTTGGCGTACGTGAAATTCCAAAGATTAAGAATTGGAATGT 1547
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 1494 CTTCATTGTGCGTGCAGGTGTTGGCTTACCTGAAATTCCAAAGGTTAAGAATTGGAATGC 1553
Query 1548 TGTGAGAAGGATGTCATTGATGGAGAACAAGATTCATCATCTCGTTGGTAGTTATGAATG 1607
||||||||||||||| ||||||||||||||||||| ||||||| |||| |||| ||||||
Sbjct 1554 TGTGAGAAGGATGTCGTTGATGGAGAACAAGATTCGTCATCTCATTGGCAGTTTTGAATG 1613
Query 1608 TATGGAACTCACAACTTTGCTCCTGGGAAAGCGAGAATATGGAAGTATTCGGAGTCAATT 1667
||||||||||||||||||||||||||||| | | || | | || || | | |||
Sbjct 1614 TATGGAACTCACAACTTTGCTCCTGGGAA-GTG-GA-T-T--AA-TA---G-A---AAT- 1658
Query 1668 AAAAACGATCTCGAGTGAATTCTTCAATTGCATGCCAAAGCTAGCTGTTTTGGATCTATC 1727
||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1659 ------GATCTCGAGTGAATTCTTCAATTACATGCCAAAGCTAGCTGTCCTGGATCTATC 1712
Query 1728 GCATAATAAAAGTCTCTTTGAATTGCCGGAAGAAATATCAAATCTAGTTTCCTTGAAATA 1787
|||||| |||| |||| ||||||||| |||| |||||||||||||||||||||| ||||
Sbjct 1713 ACATAATGAAAGGCTCTATGAATTGCCAGAAGGAATATCAAATCTAGTTTCCTTGCAATA 1772
Query 1788 TCTCAACTTGTTATATA-CTGAGATA-A-GTCATTTGCCTAAG--GG-TATAC-AAGAGT 1840
|||||||||| || || ||| | || | | | |||||| ||| || | | | || |||
Sbjct 1773 TCTCAACTTGAGAT-TAACTG-G-TACACGCCGTTTGCCAAAGAAGGGTCTGCGAA-AGT 1828
Query 1841 TGAAGAAAA-TAATTCACTTGAATTTGGAGTATACAAGGAAGCTTGAGAGCATTACTGGG 1899
|||| |||| ||||||||||| |||||||||||||| ||| |||||||| ||| |||||
Sbjct 1829 TGAA-AAAACTAATTCACTTGGATTTGGAGTATACATCGAATCTTGAGAGTATTGCTGGG 1887
Query 1900 ATATCAAGTCTGCATAACTTGAAAGTTCTGAAATTAT-T--TCGTTCTAGATTACCATGG 1956
|||||||||||| |||| ||||||||| |||||||| | | |||| | || | ||||
Sbjct 1888 ATATCAAGTCTGTATAATTTGAAAGTTTTGAAATTACGTAATAATTCTTGGTTTCTATGG 1947
Query 1957 GATCTCAACACAGTGAAGGAGCTGGAAACTTTGGAACATTTAGAAATTTTAACCACAACT 2016
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 1948 GATCTCGACACAGTGAAGGAGTTGGAAAGTTTGGAACATTTAGAAATTTTAACCGCAACT 2007
Query 2017 ATCGATCCAAG--A-GCGAAGC-AGTTTTTGAGCTCCCATAGGTTGCTGAGTCATTCACG 2072
||| ||| ||| | | || || | ||||||||||| ||||||||| ||||| ||||||
Sbjct 2008 ATCAATC-AAGGTATG-GA-GCCA-TTTTTGAGCTCTCATAGGTTGATGAGTTGTTCACG 2063
Query 2073 ATTGCT-AGAGATCTATGGA---TCTT---C-T----G-TA--TCCTCA-C-T-A-A-AT 2112
||| || | ||||| |||| | || | | | || | ||| | | | | ||
Sbjct 2064 ATTTCTTAC-GATCTCTGGAAAATATTTATCATCACCGATAAATATTCATCATCACAGAT 2122
Query 2113 A--G--A--CATCTAGAAT--CACTTTCAGTATCTACGGACAAGCTTCGCGAATTTCA-A 2163
| | ||| | |||| ||||||||| | ||| |||||||||| || |||| || |
Sbjct 2123 GTCGGGAATCATTTGGAATATCACTTTCAGGAACTATGGACAAGCTTAGCCAATT-CAGA 2181
Query 2164 ATT-AAGAGCTGCAGTATCTCTGAGATTAAGATGGGAGGGATATGCAACTTCTTGAGCCT 2222
||| |||| |||| | ||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 2182 ATTGAAGA-CTGCGGAATCTCTGAGATAAAGATGGGAAGGATATGCAGCTTCTTGAGCCT 2240
Query 2223 CGTCGATGTGAATATATTCA-ATTGTGAAGGCTTGAGGGAATTGACGTTTCTGATCTTTG 2281
||||| ||| |||| | ||||||||| | |||||||||||||||||||||| ||||
Sbjct 2241 TGTCGAAGTGTTTATAAA-AGATTGTGAAGCCCTGAGGGAATTGACGTTTCTGATGTTTG 2299
Query 2282 CTCCAAAGATTAGATCTCTTTCTGTTTGGCATG--CAAAAGACCTAGAAGATATAATAAA 2339
||||||| ||||| |||| ||||| || | |||| || |||||||||||||||||
Sbjct 2300 CTCCAAATCTTAGAAAACTTTATGTTT--CAGGGGCAAACGAACTAGAAGATATAATAAA 2357
Query 2340 CGAAGAGAAAGCTTGTGAAGGTGA-AGAAT--CGGGGATTCTTCCTTTTCCAGAGCTGAA 2396
| ||||||||||||| || ||| | | ||| | |||||| ||||||||| | |||||||
Sbjct 2358 CAAAGAGAAAGCTTGCGA-GGT-ACA-AATTTCAGGGATTGTTCCTTTTCAAAAGCTGAA 2414
Query 2397 TTTTCTTACTTTACATGATCTACCGAAGCTGAAGAAGATCTATTGGAGACCTCTACCCTT 2456
|||| |||| | | ||| | ||||||||| ||||||||||| |||||||||||
Sbjct 2415 AGAACTTATTTTATTTCAGCTAGGGTGGCTGAAGAATATCTATTGGAGTCCTCTACCCTT 2474
Query 2457 TCTATGTCTAGAAGAAA-TCAA--TATAAGGGAATGTCCAAATCTGAGAAAGCTTCCACT 2513
|| ||||||| | || |||| || || | | |||| |||||||||||||||||||||
Sbjct 2475 TCCATGTCTACA-GACTGTCAAAGTAAAAAG-A-TGTCAAAATCTGAGAAAGCTTCCACT 2531
Query 2514 CGATTCCACAAGTGGCAAGCAAGGTGAAAATGGA 2547
| |||||| |||||||||||| ||||| ||||||
Sbjct 2532 CAATTCCAAAAGTGGCAAGCAGGGTGATAATGGA 2565
> Ahg907240 jgi|Araly1|907240|Al_scaffold_0002_321
Length=3522
Score = 1138 bits (616), Expect = 0.0
Identities = 1301/1620 (80%), Gaps = 93/1620 (6%)
Strand=Plus/Plus
Query 442 CCTCTTCAACCGACAATCGTTGGTCAAGACACAATGCTCGATAAGGCAGGGAAACATCTC 501
|||| || || || ||| ||||||||||| |||||||| ||||| ||| ||||||||||
Sbjct 1066 CCTCCTCCACGGATAATTGTTGGTCAAGAGACAATGCTAGATAACGCATGGAAACATCTG 1125
Query 502 ATGGAAGATGGAGTTGGTATTATGGGTATGTACGGTATGGGCGGTGTAGGGAAGACAAC- 560
|| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1126 ATTGAAGATGGAGCTGGTATTATGGGTATGTACGGTATGGGCGGAGTAGGGAAGACAACT 1185
Query 561 ACTTCTCACTCAGCTCTACAATATGTTCAATAAGGATAAGTGTGGATTTGA-TATTG-GC 618
| ||||||| ||| || | |||| ||||| ||| |||| |||||||||||| | ||| |
Sbjct 1186 A-TTCTCACCCAGATCAATAATAAGTTCAGTAATGATAGGTGTGGATTTGACT-TTGTG- 1242
Query 619 ATTTGGGTTGTCGTGTCTCAAGAGTTTCATGTGGAGAAGGTTCAAGATGAAATCGCTCA- 677
||||||||||| |||||| ||||| | ||| | ||||| ||||||||||||| ||| |
Sbjct 1243 ATTTGGGTTGTGGTGTCTAAAGAGCTGCATATAGAGAATATTCAAGATGAAATTGCTGAG 1302
Query 678 AAAGCTTGGTCTTGGTGGAGATGAGTGGACACAGAAA-GATAAAAGTCAAAAGGGGATTT 736
|||| |||||||||||||||| ||||||| ||| ||| ||| ||| ||||||||| ||
Sbjct 1303 AAAG-TTGGTCTTGGTGGAGAAGAGTGGA-ACAAAAAAGATGAAACTCAAAAGGGCCTTC 1360
Query 737 GTTTATACAATATCTTGAGGGA-AAAGAGTTTTGTGTTGTTTTTAGATGACATATGGGAA 795
|||||||||| |||| ||| | |||||| || |||||||||||||||| ||||||||
Sbjct 1361 ATTTATACAATTTCTTAAGG-ACAAAGAGATTCATGTTGTTTTTAGATGATATATGGGAG 1419
Query 796 AAGGTGGATTTAGCTGAGATCGGAGTTCCGGATCCAAGAAC-CAAAAAAGGACGTAAATT 854
| |||||| |||| | |||| ||| | |||||||||| | | || ||| ||| | | |||
Sbjct 1420 ACGGTGGAATTAGATAAGATTGGAATCCCGGATCCAACATCACACAAA-GGATGCAGATT 1478
Query 855 GGCATTTACGACTCGGTCCC-AAGAGGTATGTGCACG--CATGGGGGTCG-AACATCCAA 910
|||||| || |||||||| | || | ||||| |||| ||||||||| | || | ||||
Sbjct 1479 GGCATTCACCACTCGGTCTCTAA-ATGTATG--CACGAGCATGGGGGTTGGAAAA-CCAA 1534
Query 911 TGGAAGTCCAATGCTTGGAAGA-GAATGTGGCATTTGATTTGTTCCAAAAGAAGGTTGGA 969
||||||||||||| |||| || || || ||||||||||||||| |||| |||||||||
Sbjct 1535 TGGAAGTCCAATGTTTGGCGGACGA-TGACGCATTTGATTTGTTCAAAAAAAAGGTTGGA 1593
Query 970 CAAACAACACTTGGAAGCGATCCGGGGATCCCCCAACTTGCAAGAATAGTTGCGAAAAAA 1029
|| |||||| | ||||||||| |||||| | ||||||| ||||||||| ||||||
Sbjct 1594 GAATTAACACTCGAAAGCGATCCACAGATCCCAGACCTTGCAAAAATAGTTGCTAAAAAA 1653
Query 1030 TGTTGTGGCCTACCATTGGCGCTCAACGTCATAGGCGAGACCATGTCATGCAAAAGGACG 1089
|||||||| |||||||||| |||||||| ||||| || |||||||||| ||| ||||||
Sbjct 1654 TGTTGTGGTTTACCATTGGCTCTCAACGTAATAGGTGAAACCATGTCATCCAAGAGGACG 1713
Query 1090 ATACAAGAATGGCGTCACGCTATA-CATGTTTTGAATTCATACGCTGCAGAGTTTAT-AG 1147
|||||||||||||| | || ||| || ||||||| |||||| || ||||||||| | ||
Sbjct 1714 ATACAAGAATGGCGACGTGCGATATCA-GTTTTGACTTCATATGCCGCAGAGTTT-TCAG 1771
Query 1148 GCATGGAGGATAAGGTTCTTCCGCTTTTGAAGTATAGCTACGATAACCTTAAGGGGGAGC 1207
||||| | |||||| | |||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1772 GCATGAATGATAAGATCCTTCCGCTTTTGAAGTATAGCTACGATAGTCTTAAAGGGGACC 1831
Query 1208 AAGTCAAATCGAGTTTGTTGTATTGTGCTTTATATCCAGAAGATGCGAAAATTCTGAAAG 1267
| ||||||| ||||| | || || ||||||||||| |||||||| ||||||| | ||
Sbjct 1832 ATGTCAAATTTTGTTTGCTATACTGCGCTTTATATCCGGAAGATGCTAAAATTCCCATAG 1891
Query 1268 AAGATTTGATAGAGC-ATTGGATATGCGA-GGAAATTATAGATGGAAGTGAAGGTATAGA 1325
||||||||||||| | | ||||||||||| |||| |||||||| || ||||| || | |
Sbjct 1892 AAGATTTGATAGA-CTACTGGATATGCGAAGGAA-TTATAGATAGAGGTGAAAGTGTTGT 1949
Query 1326 AAAGGCTGAGGACAAGGGTTATGAGATTATAGGTTGTCTTGT-TCGCGCATCATTGTTGA 1384
| |||||||| | | | |||||||||| || ||| ||||||| | | |||||||||||||
Sbjct 1950 AGAGGCTGAGTATATGAGTTATGAGATAATTGGTAGTCTTGTGT-GTGCATCATTGTTGA 2008
Query 1385 TGGAGTGGGATGATGGGGATGGACGACG-TGCTGTGTGTATGCATGACGTTG-TTCGTGA 1442
|| || ||| |||| ||||||| | | | |||||||||||||||||| | |||||||
Sbjct 2009 TGAAGGGGGTTGATCAGGATGGAAAA-GATTTTGTGTGTATGCATGACGT-GATTCGTGA 2066
Query 1443 AATGGCCTTATGGATCGCTTCTGAACTGGGAATACAAAAGGAGGCCTTCATTGTGCGTGC 1502
||||||||| |||||||| ||||| |||||| | ||||||| | || |||||||||||
Sbjct 2067 AATGGCCTTGTGGATCGCATCTGATTTGGGAAGAGAAAAGGATGTTTTTATTGTGCGTGC 2126
Query 1503 AGGTGTTGG-CGTACGTGAAATTCCAAAGATTAAGAATTGGAATGTTGTGAGAA-GGATG 1560
||||||||| | ||||||||||||||| | ||| | ||||||| |||| |||| |||||
Sbjct 2127 AGGTGTTGGGC-TACGTGAAATTCCAAGGGTTAGGGATTGGAACATTGT-AGAAAGGATG 2184
Query 1561 TCATTGATG-----GAG-AA---CAAGA--TTCATCATCTCGTTGGTAGTTATGAATGTA 1609
||||||||| ||| || ||||| || |||| | ||| | | ||||||||
Sbjct 2185 TCATTGATGAAACTGAGGAATAACAAGAGGTT--TCATGTTACTGGCACTCCTGAATGTA 2242
Query 1610 TGGAACTCACAACTTTGCTCCTGGGAAAGCGAGAATATGGAAGTATTCGGAGTCAATTAA 1669
|| |||||||||||||||||||| || | | | | ||| | || || | || ||
Sbjct 2243 TGAAACTCACAACTTTGCTCCTGC-AA--C-A---T-TCGAA-T-TT-GG-G--AAGTA- 2287
Query 1670 AAACGATCTCGAGTGAATTCTTCAATTGCATGCCAAAGCTAGCTGTTTTGGATCTATCGC 1729
||||||||||||||||||| | ||||||||| || ||||| ||||||||||||
Sbjct 2288 ------TCTCGAGTGAATTCTTCAAGTACATGCCAAATCTTGCTGTGTTGGATCTATCGA 2341
Query 1730 ATAATAAAAGTCTCTT-TGAATTGCCGGAAGAAATATCAA-ATCTAGTTTCCTTGAAATA 1787
||||| | ||||| || |||||||||||| ||||| || |||||||| || ||||
Sbjct 2342 ATAATGACAGTCT-TTGTGAATTGCCGGATC---TATCAGGAT-TAGTTTCCCTGCAATA 2396
Query 1788 TCTCAACTTGTTATATACTGAG-ATAAGTC-ATTTGCCTAAGGGTATACAAGAGTTGAAG 1845
||||||||||| | ||||| || ||| || | |||||||||||| ||||| ||||||||
Sbjct 2397 TCTCAACTTGTCAAATACT-AGCATAC-TCCAATTGCCTAAGGGTGTACAAAAGTTGAAG 2454
Query 1846 AAAATAATTCACTTGAATTTGGAGTATACAAG-GA-AGCTTGAGAGCATTACTGGGATAT 1903
||| ||||| ||||| |||||||| | ||| | | ||| | | | |||||||||||
Sbjct 2455 AAACTAATTTACTTGGATTTGGAGAAAACATTTGTTAT-TTGGG-GTAGTACTGGGATAT 2512
Query 1904 CAAGTCTGCATAACTTGAAAGTTCTGAAATTATTTCGTTCTAGATTACCATGGGATCTCA 1963
||||||||||||| ||||||||| |||| |||||| ||||| ||| || ||| | |
Sbjct 2513 CAAGTCTGCATAATTTGAAAGTTTTGAAGTTATTTGGTTCTC-ATTTTTATTGGAACACC 2571
Query 1964 ACA-CAGTGAAGGAGCTGGAAACTTTGGAACATTTAGAAATTTTAACCACAACTATCGAT 2022
||| |||||||||| ||||| | ||||||||||| ||| ||||||||| ||| || |||
Sbjct 2572 ACATCAGTGAAGGAATTGGAAGCCTTGGAACATTTGGAAGTTTTAACCATAACAATTGAT 2631
Score = 281 bits (152), Expect = 1e-74
Identities = 316/392 (81%), Gaps = 23/392 (6%)
Strand=Plus/Plus
Query 2124 ATCACTTTCAGTATCTACGGACAAGCTTCGCGAA-T-TTCA-AATTAAGAGCTGCAGTAT 2180
||||||| ||| | ||| |||||||||||| ||| | | || ||| ||| |||| |||
Sbjct 2811 ATCACTTCCAGCAACTATGGACAAGCTTCGTGAACTCTACATTTTTAGGAGTTGCAATAT 2870
Query 2181 CTCTGAGATTAAGATGGGAGGGATATGCAACTTCTTGAGCCTCGTCGATGTGAATATATT 2240
||||||||| ||||||||| ||||||||| |||||||||||||||| | ||| | |||
Sbjct 2871 CTCTGAGATAAAGATGGGAAGGATATGCAGCTTCTTGAGCCTCGTCAAAGTG-CT-TATA 2928
Query 2241 C-A-ATTGTGAAGGCTTGAGGGAATTGACGTTTCTGATCTTTGCTCCAAAGATTAGATCT 2298
| | ||||| ||||| ||||||||||||| |||||||| || |||||||| ||| || |
Sbjct 2929 CAAGATTGTAAAGGCCTGAGGGAATTGACATTTCTGATGTTCGCTCCAAATCTTAAAT-T 2987
Query 2299 CTTTCTGT-TTG--GCATGCAAAAGACCTAGAAGATATAATAAACGAAGAGAAAGCTTGT 2355
||| | | ||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2988 -TTTGTATGTTGATG-ATGCAAAAGACCTAGAAGATATAATAAACAAAGAGAAAGCTTGT 3045
Query 2356 GAAGGTGAAGAATCGGGGATTCTTCCTTTTCCAGAGCTGAATTTTCTT-ACTTTACATG- 2413
|||| |||| | | || ||| ||||||||| | |||||| | |||| | ||| | |
Sbjct 3046 GAAGTTGAA-ATTAGG--ATTGTTCCTTTTCAAAAGCTGACTAATCTTCA-TTTGGA-GC 3100
Query 2414 ATCTACCGAAGCTGAAGAAGATCTATTGGAGACCTCTACCCTTTCTATGTCTAGAAGAAA 2473
|||||||||||||| |||| || || ||||| |||||| |||||| ||||||| ||||||
Sbjct 3101 ATCTACCGAAGCTGGAGAATATATACTGGAGTCCTCTATCCTTTCCATGTCTA-AAGAAA 3159
Query 2474 -TCAATATAAGGGAATGTCCAAATCTGAGAAA 2504
|| || || ||||||||||| |||| |||
Sbjct 3160 ATCGATGTATTCGAATGTCCAAACCTGA-AAA 3190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100139254105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5