BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63410.1 Length=627 Score E Sequences producing significant alignments: (Bits) Value Ahg315074 jgi|Araly1|315074|fgenesh1_pm.C_scaffold_2000107 898 0.0 > Ahg315074 jgi|Araly1|315074|fgenesh1_pm.C_scaffold_2000107 Length=576 Score = 898 bits (486), Expect = 0.0 Identities = 528/548 (96%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 1 ATGGCTAGGGTTTTTCCTCAAGCGGCCATCTCTTCACCGTACATGAGTACGGAGAGAGAG 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTAGGGTTTTTCCTCAAGCAGCCATCTCTTCACCGTACATGAGTACGGAGAGAGAG 60 Query 61 ACTTTCACGGTTTGGATGAAATCTCTGGTTTACCAAACCAATGGTTTAACTGTTTACAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACTTTCACGGTTTGGATGAAATCTCTGGTTTACCAAACCAATGGTTTAACTGTTTACAAT 120 Query 121 TCCAACGGAGAGATTACTTACCGTGTCGAAAACTACGACAAATGTAGCAATGAAGTCCAT 180 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCAACGGAGAGATTACGTACCGTGTCGAAAACTACGACAAATGTAGCAATGAAGTCCAC 180 Query 181 ATCATGGATCTCCATGGCAACATTTTGTTCACCATCCGCAAAAAGAAATTATGGCT-TTT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 ATCATGGATCTCCATGGCAACATTTTGTTCACCATCCGCAAAAAGAAATTATGGCTGTTT 240 Query 240 CGGGAGTTGGTATGTGTATAGAGAATGTGGAAGCTTTACAAGCACG-GAAGAAGTGAAAC 298 ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| Sbjct 241 -GGGAGTTGGTATGTGTATAGAGAATGTGGAAGCTTTACAAGCA-GTGAGGAAGTGAAAC 298 Query 299 CTTGTGCTAGAATCAAAAGGTCTTCGATAAGAGATGGAGATTGGGAAGTTCGAGATGAGA 358 ||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 299 CTTTTGTTAGAGTCAAAAGGTCTTCGATTAGAGATGGAGATTGGGAAGTTCGAGATGAGA 358 Query 359 CCAATGAAGTCTTTTGGATTTTAAGATTTGACCCCAAATTTGCTTTTCAGATCATAGACA 418 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CCACTGAAGTCTTTTGGATTTTAAGATTTGACCCCAAATTTGCTTTTCAGATCATAGACA 418 Query 419 TTCACGGAAATATCATTGCACAGGTTAAGCCAAAGCAATCATCAAATGGGATTACATTGG 478 | |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 419 TCCACGGAGATATCATTGCACAGGTAAAGCCAAAGCAATCATCAAATGGGATTACATTGG 478 Query 479 GAGAAGATGTGTTAACTTTGGAGGTGAAACCACGTGTTGATCACTCACTCGTTGTCACAC 538 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 479 GAGAAGATGTGTTAACTTTGGAGGTGAAACCACGTGTCGATCACTCACTCGTTGTCGCAC 538 Query 539 TTGTCACT 546 | || ||| Sbjct 539 TGGTTACT 546 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22949996034 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5