BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63410.1
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315074 jgi|Araly1|315074|fgenesh1_pm.C_scaffold_2000107 898 0.0
> Ahg315074 jgi|Araly1|315074|fgenesh1_pm.C_scaffold_2000107
Length=576
Score = 898 bits (486), Expect = 0.0
Identities = 528/548 (96%), Gaps = 4/548 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAGGGTTTTTCCTCAAGCGGCCATCTCTTCACCGTACATGAGTACGGAGAGAGAG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAGGGTTTTTCCTCAAGCAGCCATCTCTTCACCGTACATGAGTACGGAGAGAGAG 60
Query 61 ACTTTCACGGTTTGGATGAAATCTCTGGTTTACCAAACCAATGGTTTAACTGTTTACAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTTCACGGTTTGGATGAAATCTCTGGTTTACCAAACCAATGGTTTAACTGTTTACAAT 120
Query 121 TCCAACGGAGAGATTACTTACCGTGTCGAAAACTACGACAAATGTAGCAATGAAGTCCAT 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCAACGGAGAGATTACGTACCGTGTCGAAAACTACGACAAATGTAGCAATGAAGTCCAC 180
Query 181 ATCATGGATCTCCATGGCAACATTTTGTTCACCATCCGCAAAAAGAAATTATGGCT-TTT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 ATCATGGATCTCCATGGCAACATTTTGTTCACCATCCGCAAAAAGAAATTATGGCTGTTT 240
Query 240 CGGGAGTTGGTATGTGTATAGAGAATGTGGAAGCTTTACAAGCACG-GAAGAAGTGAAAC 298
||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 241 -GGGAGTTGGTATGTGTATAGAGAATGTGGAAGCTTTACAAGCA-GTGAGGAAGTGAAAC 298
Query 299 CTTGTGCTAGAATCAAAAGGTCTTCGATAAGAGATGGAGATTGGGAAGTTCGAGATGAGA 358
||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 CTTTTGTTAGAGTCAAAAGGTCTTCGATTAGAGATGGAGATTGGGAAGTTCGAGATGAGA 358
Query 359 CCAATGAAGTCTTTTGGATTTTAAGATTTGACCCCAAATTTGCTTTTCAGATCATAGACA 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCACTGAAGTCTTTTGGATTTTAAGATTTGACCCCAAATTTGCTTTTCAGATCATAGACA 418
Query 419 TTCACGGAAATATCATTGCACAGGTTAAGCCAAAGCAATCATCAAATGGGATTACATTGG 478
| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 TCCACGGAGATATCATTGCACAGGTAAAGCCAAAGCAATCATCAAATGGGATTACATTGG 478
Query 479 GAGAAGATGTGTTAACTTTGGAGGTGAAACCACGTGTTGATCACTCACTCGTTGTCACAC 538
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 479 GAGAAGATGTGTTAACTTTGGAGGTGAAACCACGTGTCGATCACTCACTCGTTGTCGCAC 538
Query 539 TTGTCACT 546
| || |||
Sbjct 539 TGGTTACT 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22949996034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5