BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63420.1
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475010 jgi|Araly1|475010|fgenesh2_kg.2__140__AT1G63420.1 2564 0.0
> Ahg475010 jgi|Araly1|475010|fgenesh2_kg.2__140__AT1G63420.1
Length=1727
Score = 2564 bits (1388), Expect = 0.0
Identities = 1640/1756 (93%), Gaps = 40/1756 (2%)
Strand=Plus/Plus
Query 1 ATGACGTCTCTATTCTCTAAACCTAGAGCTCTCACTTCTCATATCACCAACTTTAAAACT 60
||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 ATGACCTCTCTATTCTCTAAACCTAGAGCTCTCACTTCTCATTTCACCGACTTTAAAACT 60
Query 61 TACCGTCCGGTTATCGGAAAACTCCACGTGGCAACTTTAACGCTTCTTCTCTTCCTAATC 120
||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 61 TACCGCCCGGTGATCGGAAAACTCCACGTGGCCACTTTGACGCTTCTTCTCTTCCTTATC 120
Query 121 GCCGCCGGTATTGCCGTCACTTCCTCTCTATGGCTTAACAAGACGACAAAAGCATTTGAT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GCCGCCGGTATTGCCGTCACTTCCTCTCTATGGCTTAACAAGACGACGAAAGCATTTGAT 180
Query 181 CGACCGACATTAGTAGCAACAAAACCAGAACCGGAGCTAGAGCCACCGCATG-AAACCGG 239
|||||||||||||||||||| | | ||||||||||||| |||||||| | ||||||
Sbjct 181 CGACCGACATTAGTAGCAAC---A--A-AACCGGAGCTAGAACCACCGCA-GAAAACCGA 233
Query 240 AGTATTGGTAAATTGCACAAGTTTCTTGAATCAAAACCGGTCCGGTTCTTGCTCAAGAAC 299
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 234 AGTATTGGTTAATTGCACAAGTTTCTTGAATCACAACCGGTCCGGTTCTTGCTCAAGAAC 293
Query 300 ACCTCTA---CTTAACAAGAAAAAACCATCTCATCGACCGACAATAACAACAATAAAACC 356
||||||| |||||||||| |||||||| | ||| | || | |||||||||||
Sbjct 294 ACCTCTATGGCTTAACAAGACAAAACCATATAATC-A---AC-----CGACAATAAAACC 344
Query 357 GGTCCCGGTACGTGTATCAGAGAAGAAATCACCGGAGGAA-ACCGGAAGCTCGGTAGATT 415
|||||||||||| | | ||||||||||||||| | ||| ||||||| |||| ||||||
Sbjct 345 GGTCCCGGTACGGGAACCAGAGAAGAAATCACTACA-GAATACCGGAATCTCGTTAGATT 403
Query 416 GCTCAAGTTTCTTGAATCAAAACCGG-TCTGGTTCTTGCTCAAGAAC-ACTGCAATCGGG 473
|| ||||||||||||||||||| ||| || ||||| ||||| ||||| ||| ||| |
Sbjct 404 GCACAAGTTTCTTGAATCAAAA-CGGTTCCGGTTCATGCTCGAGAACAACT-CAACCAAA 461
Query 474 TTATAATCAAAACCAAACCGAATCTAACCGGTCTTGTCCTGATTACTTCAAGTGGATTCA 533
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 462 TAATAATCAAAACCAAACCGAATCGAACCGGTCTTGTCCTGATTACTTCAAGTGGATCCA 521
Query 534 CGAGGATCTAAAACCATGGAGAGAAACAGGGATAACAAAAGAAATGGTGGAAAGAGGCAA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 522 CGAGGATCTAAAACCATGGAGAGAAACAGGGATAACAAAAGAAATGGTGGAAAGAGGGAA 581
Query 594 AACTACAGCACATTTCAGGTTAGTTATTTTAAACGGCAAGGTGTTCGTCGAAAACTACAA 653
||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 582 AACAACAGCGCATTTCAGGTTAGTTATTGTAAACGGCAAGGTGTTCGTGGAAAACTACAA 641
Query 654 GAAGTCTATACAAACTAGAGATGCGTTCACACTATGGGGGATTCTTCAGCTGCTGAGAAA 713
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GAAGTCTATACAGACTAGAGATGCGTTCACACTATGGGGGATTCTTCAGCTGCTGAGAAA 701
Query 714 GTATCCAGGGAAGTTACCTGACGTGGATCTCATGTTTGACTGTGATGATCGACCAGTCAT 773
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 702 GTATCCAGGGAAGTTACCTGACGTGGATCTCATGTTTGACTGCGATGATCGACCAGTCAT 761
Query 774 TAGATCGGACGGTTATAATATAT-TGAATCGTACGGTTG-AGAATGCGCCACCTCCGTTG 831
||||||||| |||||||||| || | |||||||||| || || ||| |||||||||||
Sbjct 762 TAGATCGGATGGTTATAATAGATCT-AATCGTACGGCTGAAG-ATGTACCACCTCCGTTA 819
Query 832 TTTAGATATTGCGGTGATAGGTGGACGGTGGATATCGTCTTTCCTGATTGGTCATTCTGG 891
||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| |||
Sbjct 820 TTTAGGTATTGCGGTGATAGATGGACGGTGGATATTGTCTTTCCCGATTGGTCATTTTGG 879
Query 892 GGATGGCAGGAGATAAACATAAGGGAGTGGAGCAAAGTGTTgaaagaaatggaagaagga 951
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 880 GGATGGCAGGAGATAAACATAAAGGAGTGGAGCAAAGTGTTGAAAGAAATGGAAGAAGGA 939
Query 952 aagaagaagaagaaatttatggaaagagaCGCCTATGCATATTGGAAAGGGAACCCTTTT 1011
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 940 AAGAAGAAGAAGAAATTTATGGAAAGAGAGGCTTATGCATATTGGAAAGGGAACCCTTTT 999
Query 1012 GTTGCATCTCCTTCAAGAGAAGATCTCCTCACTTGCAATTTATCCTCACTACATGATTGG 1071
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1000 GTTGCATCTCCTTCAAGAGAAGATCTTCTCACTTGCAATTTATCCTCACTACATGATTGG 1059
Query 1072 AATGCTAGAATTTTCATTCAGGATTGGATATCAGAAGGACAAAGAGGATTTGAGAATTCG 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AATGCTAGAATTTTCATTCAGGATTGGATATCAGAAGGACAAAGAGGATTTGAGAATTCA 1119
Query 1132 AATGTAGCAAATCAATGCACTTACAGGTACAAGATCTATATAGAAGGGTATGCGTGGTCA 1191
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1120 AATGTAGCAAATCAATGCACTTACAGGTACAAGATATATATAGAAGGGTATGCGTGGTCA 1179
Query 1192 GTGAGTGAGAAATACATATTAGCATGTGACTCAGTCACATTGATGGTGAAACCTTATTAC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GTGAGTGAGAAATACATATTAGCATGTGACTCAGTCACATTGATGGTGAAACCTTATTAC 1239
Query 1252 TATGATTTCTTCTCAAGAACTCTTCAACCTCTCCAACACTATTGGCCCATTAGGGATAAA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TATGATTTCTTCTCAAGAACTCTTCAACCTCTCCAACACTATTGGCCCATTAGGGATAAA 1299
Query 1312 GATAAATGTAGATCCATCAAATTTGCTGTTGATTGGCTTAATAATCACACTCAAAAGGCT 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GATAAATGTAGATCCATCAAATTTGCTGTTGATTGGCTTAATAATCACACTCAAAAGGCT 1359
Query 1372 CAAGAGATAGGAAGAGAAGCAAGTGAGTTCATGCAAAGAGATCTATCAATGGAAAATGTT 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 CAAGAGATAGGAAGAGAAGCAAGTGAGTTCATGCAAAGAGATCTATCAATGGAAAATGTT 1419
Query 1432 TATGATTACATGTTCCATCTGTTGAATGAATACTCCAAGCTTCTTAAGTACAAGCCTCAA 1491
|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1420 TATGATTATATGTTCCATTTGTTGAATGAATACTCCAAGCTTCTCAAGTACAAGCCTCAA 1479
Query 1492 GTTCCAAAGAATAGTGTTGAGCTATGCACAGAAGCCTTGGTGTGCCCTTCTGAAGGGGAA 1551
||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 1480 GTTCCCAAGAATAGTGTTGATCTATGCACAGAAGCAATGGTGTGCCCTTCTGAAG---A- 1535
Query 1552 GATGTTAATGGGGTTGATAAGAAA-TTTATGATAGGCTCTTTAGTTAGTAGGCCTCATGC 1610
||||||||||||| |||| || |||||||| ||||||||||||||||||||||||
Sbjct 1536 --TGTTAATGGGGTTAATAA-AAGGTTTATGATGGGCTCTTTAGTTAGTAGGCCTCATAT 1592
Query 1611 TTCTGGCCCATGTTCACTTCCTCCTCCTTTTGATTCCAATGGTCTTGAGAAGTTCCATAG 1670
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 TTCCAGCCCATGTTCACTTCCTCCTCCTTTTGATTCCAATGGTCTTGAGAAGTTCCATAG 1652
Query 1671 GAAGAAATTGAATCTCATCCGGCAAGTGGAGAAATGGGAAGACTCTTACTGGCAAAAGGT 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 GAAGAAATTGAATCTCATCCGGCAAGTGGAGAAATGGGAAGACTCTTACTGGCAAAAGGT 1712
Query 1731 TCTG-TAAAGTGATAT 1745
| | |||| ||||||
Sbjct 1713 T-TAATAAAATGATAT 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70238411780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5