BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63450.1
Length=3161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924611 jgi|Araly1|924611|scaffold_200172.1 1676 0.0
> Ahg924611 jgi|Araly1|924611|scaffold_200172.1
Length=1403
Score = 1676 bits (907), Expect = 0.0
Identities = 1235/1392 (89%), Gaps = 28/1392 (2%)
Strand=Plus/Plus
Query 1163 aaaaaacaaccaaacaagaaaaTGCCTGTCTCCGTCTCAAAGTTGAGACGACCAAGAACG 1222
||||| ||||||||||| ||||||||||||||| ||||||| ||| |||||||||||
Sbjct 1 AAAAAGCAACCAAACAAAAAAATGCCTGTCTCCATCTCAAA---GAGGCGACCAAGAACA 57
Query 1223 TCCAAAAAGACCGAAACCG-GAAATCCCGAAAAAACACTTAAAGATCCTCGTACTTGCTG 1281
|||||||| |||||||||| ||||| |||| ||||||||| ||||| |||||||||| ||
Sbjct 58 TCCAAAAAAACCGAAACCGAGAAAT-CCGAGAAAACACTTCAAGATTCTCGTACTTGTTG 116
Query 1282 TAATAACCTTTTTTCGATCTTTTCCGCCAGATCATTTCTTTATCGTGTACCTCTCACGAT 1341
||||||| ||| |||||| || | |||||||| |||| ||||||||||||||||||||
Sbjct 117 TAATAACATTTGCTCGATC--TT-CTCCAGATCAATTCTCTATCGTGTACCTCTCACGAT 173
Query 1342 TCTCTTTCTTTTCTTGATTTATCTTTGGTCCACTTCCACGACCGTTATCTCTGGTAACGT 1401
| ||||||| ||||| |||||||||||||||||||||||||||| |||||| ||| | ||
Sbjct 174 TATCTTTCTCTTCTTAATTTATCTTTGGTCCACTTCCACGACCGCTATCTCCGGTCATGT 233
Query 1402 CGTTCATATATGCATCTCTTCGCGGAAGCTCACTGACCTTTATTGCCTCACTGCCGGTTC 1461
|||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| |
Sbjct 234 CGTTCATATATGCATCTCTTCGCGGAAGCTCAATGACCGTTATTGTCTCACTGCCGGTAC 293
Query 1462 TCAGCCCGCTTTACGTGCACCAGTCAACAATTTCACTGCGCCGGCTAGTGAAGATGTGGT 1521
||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||
Sbjct 294 TCAGCCCGCTTTACGTGTACCAGTCAACAATTTCACTAAACCGGTTAGTGAAGATGTTGT 353
Query 1522 AACAAGTAAAGAAGAGAAGAATGTTTTTGTTCTTGGTAAAGACGGAGACAAGGGTTTCGC 1581
|| ||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 354 AAGAAGGAAAGAAGAGAAGAATGTTGTAGTTCTTGGTAAAGATGGAGACAAGGGTTTCGC 413
Query 1582 AGAAAATGAAACCTTCGAGGGAGGAAA-AGATTCAGACAAATCTACGGTCGGAGA-AAAC 1639
| |||||||||| |||| ||| |||| ||||||||||||||||||||||||| | || |
Sbjct 414 AAAAAATGAAACATTCGTCGGA-GAAAGAGATTCAGACAAATCTACGGTCGGA-ACAAGC 471
Query 1640 CTCACCATCAAT-AAGAACGAAACTTTCACAGGAGAAACCTCCGGAGAAAGAGTTTCCAT 1698
|||| | || || ||||| || |||| ||| ||||||| || | |||||||||||| | |
Sbjct 472 CTCAACGTC-ATAAAGAATGACACTTCCACCGGAGAAATCTTCAGAGAAAGAGTTTTCGT 530
Query 1699 TCTTAATCAAGATGCTAAACCCATCCATGAAAAGAATCTTGATTCCGTTCTTGATCAAGA 1758
|||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 531 TCTTGATCAAGATTCTAAACCCATCCATGAGGAGAATCTTGATTCCGTTCTTGATCAAGA 590
Query 1759 TTCTTTA-CCCAAAAACGAGATTGATCAAGATTTCATCATTGATTGGGATCCAGAAACTG 1817
||| | | ||||||||||||||||||| ||| || | ||||||||||||||||||| |
Sbjct 591 TTC-TAACCCCAAAAACGAGATTGATCGCGATGTCTTTGTTGATTGGGATCCAGAAACCG 649
Query 1818 GCGAAGAACGATACCGATATTTCAAAGCGAA-GACCG-AAGACGAGGAGACCGGTCTAAA 1875
|||||||||||||||||||||||||| |||| || || ||| ||||||||| | ||||||
Sbjct 650 GCGAAGAACGATACCGATATTTCAAATCGAAGGA-CGAAAG-CGAGGAGACTGCTCTAAA 707
Query 1876 ATCTACGGA-AGAGTATATTCAAATACAGAGAACTTGGTTATCGATGGGAAACAACCGCA 1934
| | ||| | ||||| |||||||||| ||| |||||||||| ||||||| |||||||
Sbjct 708 AGCCGTGGACA-AGTATCTTCAAATACAAAGATCTTGGTTATCAATGGGAAGCAACCGCG 766
Query 1935 AAAAGCCGGGATCTTGCGAAGGAAAAG-GTGTATACGTTTACGATTTACCATCTAAATTC 1993
|||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 767 GAAAGCCTGGATCTTGCGAAGGAAAAGAG-GTTTACGTTTACGATTTACCATCTAAATTC 825
Query 1994 AACAAAGATTTGTTGAGGGAA-TGCTCCGATATGGTTCCATGGGCTGATTTTTGCAACTA 2052
||||||||||||||| ||| | |||||||||||||| |||||||| ||||||||| |||
Sbjct 826 AACAAAGATTTGTTG-GGGCAGTGCTCCGATATGGTCCCATGGGCCAATTTTTGCAGCTA 884
Query 2053 CTTCAAGAACGATGCGTTTGGTGAACTGATGGAGAGTATGGGTAAAGGCTGGTTCAGAAC 2112
||||||||||||||| |||||||| |||| |||| | | |||| |||||||||||||||
Sbjct 885 CTTCAAGAACGATGCATTTGGTGATTTGATTGAGAATCTCGGTATAGGCTGGTTCAGAAC 944
Query 2113 GCATCAGTATTCACTTGAGCCGATATTTCACTCTAGAATTTTGAAGCATCCATGTAGGGT 2172
|||||| || | |||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 945 GCATCAATACGCTCTTGAGCCAATCTTTCACTCTAGAGTTTTGAAGCATCCATGTAGGGT 1004
Query 2173 TCATAACGAGACTCAAGCGAAGCTCTTCTATGTGCCTTTCTATGGCGGTATGGATGTTTT 2232
|||| | ||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1005 TCATGATGAGACCCAAGCAAAGCTCTTCTATGTGCCTTTCTATGGTGGTATAGATGTTTT 1064
Query 2233 GAGATGGCATTTCAAGAACGTTTCA-AGCGATGTGAAAGATGTTTTGCCGATTGAGATTG 2291
|||||||||||||||||||||||| || |||||||| ||||||||| |||| ||| |||
Sbjct 1065 GAGATGGCATTTCAAGAACGTTTCTGAG-GATGTGAAGGATGTTTTGGCGATCGAGGTTG 1123
Query 2292 TTAAATGGCTCGGATCGAAGAAATCATGGAGGAAAAACTCCGGAAAAGATCATGTTTTTG 2351
||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1124 TTAAATGGCTCGGTTCGAAGAAATCATGGAGGAAAAACGCCGGGAAAGATCATGTTTTTG 1183
Query 2352 TTCTCGGAAAGATCTCTTGGGATTTTAGGAGGGTTGATAAGTATTCTTGGGGCTCAAGCT 2411
|||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
Sbjct 1184 TTCTTGGAAAGATCTCTTGGGATTTTAGGAGGAATGATAAGTTTTCGTGGGGCTCAAGTT 1243
Query 2412 TACTTGAGATGCAAGAAATGAAAAACCCTACAAAGCTTCTCATCGAACGTAATCCATGGG 2471
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1244 TACTTGAGATGCAAGAAATGAAAAACCCTACAAAACTCCTCATCGAACGTAATCCATGGG 1303
Query 2472 AAGTCAACGACATCGCGATACCTCATCCCACATACTTCCACCCGAAAACTGACACCGATA 2531
| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 1304 ATGTCAACGACATCGCGATACCTCATCCGACATACTTCCACCCGAAAACAGACAACGATA 1363
Query 2532 TCGCCATATGGC 2543
||||||| ||||
Sbjct 1364 TCGCCATCTGGC 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119412918075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5