BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63460.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475007 jgi|Araly1|475007|fgenesh2_kg.2__137__AT1G63460.1 983 0.0
> Ahg475007 jgi|Araly1|475007|fgenesh2_kg.2__137__AT1G63460.1
Length=669
Score = 983 bits (532), Expect = 0.0
Identities = 611/648 (94%), Gaps = 9/648 (1%)
Strand=Plus/Plus
Query 61 TCCTTCCTCGTTGACTGCTTCTTCTGCATTTCCCAGTGAGAAATGGCGACGAAGGAACCA 120
||||| ||||||||||||||||||| ||||| | ||| ||||||||||||||||| |||
Sbjct 27 TCCTTGCTCGTTGACTGCTTCTTCTTCATTT-CTAGT--GAAATGGCGACGAAGGACCCA 83
Query 121 GAATCTGTTTACGAG-TTAAGCATCGAGGATGCAAAAGGG-AACAACTTAGCACTCAGTC 178
|| |||||||||||| || |||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 84 GACTCTGTTTACGAGATT-AGCATCGAGGATGC-AAAGGGAAACATCTTAGAACTCAGTC 141
Query 179 AATACAAAGACAAAGTTCTTTTAATTGTCAATGTTGCTTCCAAATGTGGGATGACAAACT 238
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 142 AATACAAAGAAAAAGTTCTTTTGATTGTCAATGTTGCTTCCAAATGTGGGATGACAAACT 201
Query 239 CAAACTACACTGAATTGAATGAGCTTTACAACAGGTATAAAGATAAAGGTCTGGAGATTC 298
|||||||||||||||||||||||||||| | || ||| ||||| ||||||||||||||||
Sbjct 202 CAAACTACACTGAATTGAATGAGCTTTATAGCAAGTACAAAGACAAAGGTCTGGAGATTC 261
Query 299 TAGCATTTCCTTGTAACCAGTTTGGTGACGAGGAACCGGGAACTAATGACCAAATTACTG 358
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 262 TAGCATTTCCTTGTAACCAGTTTGGTGATGAGGAACCGGGAACTAGTGACCAAATCACTG 321
Query 359 ACTTTGTTTGTACTCGCTTCAAATCTGAATTCCCCATTTTCAACAAGATTGAAGTAAACG 418
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 322 ACTTTGTTTGTACTCGCTTCAAATCTGAATTCGCCATTTTCAACAAGATTGAAGTAAACG 381
Query 419 GAGAGAATGCTTCTCCTCTGTATAAGTTCCTGAAGAAAGGCAAATGGGGAATCTTCGGCG 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 382 GAGAGAATGCTTCTCCTCTGTATAAGTTCTTGAAGAAAGGCAAATGGGGAATCTTCGGCG 441
Query 479 ATGACATTCAATGGAACTTTGCTAAGTTTCTTGTTGACAAAAACGGTCAAGCTGTACAAC 538
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 442 ATGACATTCAATGGAACTTTGCTAAGTTTCTTGTTGACAAGAACGGTCAAGCTGTAGAAC 501
Query 539 GTTATTATCCAACTACTTCCCCTCTTACACTTGAGCATGACATAAAGAATCTTCTGAATA 598
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 502 GTTATTATCCAACTACTTCCCCTCTTACTCTTGAGCATGACATAAAGAAGCTTCTGAATA 561
Query 599 TCTCCTGAATGATGAAGCTTTGTTGCTGAATCGTATTGTATTTGATTATGAACCTCTCTC 658
|||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 562 TCTCCTGAATGATGCAGCTTTGTTGCTGAATCGAATTGTATCTGATTATGAACCTCTCTA 621
Query 659 ATTCAATAAAGAGCCATGACATTGACTTGGATTGAT-TAGTTCTGTTT 705
|||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 622 ATTCAATAAAGAGCCATGACATTGACTTGGATTGATCTT-TTCTGTTT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5