BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63470.1
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315069 jgi|Araly1|315069|fgenesh1_pm.C_scaffold_2000102 1762 0.0
> Ahg315069 jgi|Araly1|315069|fgenesh1_pm.C_scaffold_2000102
Length=2343
Score = 1762 bits (954), Expect = 0.0
Identities = 1100/1167 (94%), Gaps = 23/1167 (2%)
Strand=Plus/Plus
Query 346 GGTTTTAAATGCATGGATGGGAGAGAAGCTATGGCATTTCCAGGCTCGCATTCTCAGTTC 405
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1060 GGTTTTAAATGCATGGATGGGAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTTC 1119
Query 406 TATCTTCAGAGAGGAGTTTTTACCAATCTTACACCTTCCCAGGTCGCGAGTGGTCTTCAC 465
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1120 TATCTTCAGAGAGGAGTTTTTACCAATCTTACACCTTCCCAGGTCGCGAGTGGGCTTCAC 1179
Query 466 GCGCCGCCGCCACCTCCGGGAATGAGGCCAATGTCAAACCCTAACATTCACCACCCTCAG 525
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1180 GCGCCGCCGCCACCTCCGGGAATGAGGCCAATGTCAAACCCTAACATTCATCATCCTCAG 1239
Query 526 GCTAGCAATCCAGGACCTCCTTTCTCCATGGCTGAGCACAGGCATTCTGATTTCGGACAC 585
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 1240 GCTAGCAATCCAGGACCTCCTTTCTCCATAGCTGAGCACAGGCATTCGGATTTTGGACAC 1299
Query 586 AGCATTCACATGGGGAT-G--------GCTTCTCCTGCTGCGGTGCAGCCTACTCTGCAG 636
||||||||||||||||| | ||||||||||||||||||||||| ||||| |||
Sbjct 1300 AGCATTCACATGGGGATGGCTTCCTCTGCTTCTCCTGCTGCGGTGCAGCCGACTCTACAG 1359
Query 637 CTGCCGCCTCCACCGTCGGAGCAACCGATGGTTAAGAAGAAACGTGGAAGGCCAAGAAAG 696
|||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1360 CTGCCGCCGCCACTGTCGGAGCAACCGATGGTTAAGAAGAAACGTGGACGGCCAAGAAAG 1419
Query 697 TATGTTCCTGATGGACAAGTTTCATTGGGGCTTTCTCCAATGCCTTGTGTTAGTAAAAAG 756
|||| ||||||||||||||| || || ||||||||||||||| ||||||||||||| |||
Sbjct 1420 TATGCTCCTGATGGACAAGTCTCTTTAGGGCTTTCTCCAATGTCTTGTGTTAGTAAGAAG 1479
Query 757 TCTAAGGACTCTTCTTCAATGTCTGATCCTAATGCACCTAAAAGAGCCAGAGGTCGACCT 816
|| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 1480 TCGAAGGACTCTTCTTCAATGTCTGATCCTAATGTACCTAAACGAGCCAGAGGTAGACCT 1539
Query 817 CCCGGAACTGGAAGGAAGCAACGCTTGGCTAATC-T--T--G-------GTGAGTGGATG 864
|| ||||| ||||||||||||||||||||||||| | | | |||||||||||
Sbjct 1540 CCAGGAACCGGAAGGAAGCAACGCTTGGCTAATCTTGGTGAGATCTCAAGTGAGTGGATG 1599
Query 865 AATACATCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGTGTTGGATCAGGAGAAGAT 924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 AATACATCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGTGTTGGATCAGGAGAAGAC 1659
Query 925 ATTGTTTCGAAAGTTTTGTCTTTTTCACAAAAAAGACCTCGGGCTCTTTGTATAATGTCA 984
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1660 ATTGTTTCGAAAGTGTTGTCATTTTCACAAAAAAGACCTCGGGCTCTTTGTATAATGTCG 1719
Query 985 GGCACTGGAACGGTTTCTTCAGTCACTCTGCGTGAACCCGCTTCAACAACGCCTTCCTTA 1044
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1720 GGCACTGGAACGGTTTCTTCGGTCACTCTGCGTGAACCCGCTTCCACAACCCCTTCCTTA 1779
Query 1045 ACATTTGAGGGACGTTTTGAGATTCTAAGTTTAGGTGGATCTTATCTGGTGAATGAAGAA 1104
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 ACATTCGAGGGACGTTTTGAGATTCTAAGTTTAGGTGGATCTTATCTGGTGAATGAAGAA 1839
Query 1105 GGTGGATCCAAAAGTCGAACAGGCGGTTTGAGTGTCTCTCTTTCTGGTCCTGAAGGTCAT 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 GGTGGATCCAAAAGTCGAACAGGCGGTTTGAGTGTCTCTCTTTCTGGTCCTGAAGGTCAT 1899
Query 1165 GTTATCGGCGGTGGAATTGGAATGCTTATCGCAGCCAGCCTCGTTCAGGTGGTGGCTTGT 1224
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1900 GTTATCGGCGGTGGAATTGGAATGCTCATCGCAGCCAGCCTCGTTCAGGTGGTGGCTTGT 1959
Query 1225 AGTTTCGTGTACGGAGCAAGTGCAAAGTCTAATAATAACAATAACAAGACCATCAAACAA 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 AGTTTCGTGTACGGAGCAAGTGCAAAGTCTAATAATAACAATAACAAGACCATCAAACAA 2019
Query 1285 GAAATAAAACCTAA-GCAAGAGCCGACCAATAGCGAAATGGAGACCACACCTGGTAGTGC 1343
|||||||||||||| | |||||| || |||||||||||||||||||||||| || | |||
Sbjct 2020 GAAATAAAACCTAAAG-AAGAGCAGAACAATAGCGAAATGGAGACCACACCGGGCACTGC 2078
Query 1344 ACCAGAAGCTGCAGCATCGACGGGTCAGCATACGCCACAGAACTTCCCAGCTCAGGGAAT 1403
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2079 CCCAGAAGCTGCAGCATCGACGGGTCAGCAGACGCCACAGAACTTCCCAGCTCAGGGAAT 2138
Query 1404 GAGCGGATGGCCCGTTTCAGGCTCAGGCTCAGGCAGATCACTTGACTCTAGCAGAAACCC 1463
| |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2139 GCGCGGATGGCCCGGTTCAGGCTCAGGCTCAGGGAGATCACTTGACTCTAGCAGGAACCC 2198
Query 1464 ACTCACTGATATTGACTTGACTCGCGG 1490
|||||||||||||||||||||||||||
Sbjct 2199 ACTCACTGATATTGACTTGACTCGCGG 2225
Score = 1201 bits (650), Expect = 0.0
Identities = 906/1026 (88%), Gaps = 32/1026 (3%)
Strand=Plus/Plus
Query 358 ATGGATGGGAGAGAAGCTATGGCATTTCCAGGCTCGCATTCTCAGTTCTATCTTCAGAGA 417
||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGACGGAAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTTCTATCTTCAAAGA 60
Query 418 GGAGTTTTTACCAATCTTACACCTTCCCAGGTCGCGAGTGGTCTTCACGCGCCGCCGCCA 477
||| |||||||||||| |||||||||| |||||||||| |||||||||||||||| |
Sbjct 61 GGACCCTTTACCAATCTTGCACCTTCCCAACTCGCGAGTGGGCTTCACGCGCCGCCGCAA 120
Query 478 CCTCCGGGAATGAGGCCAATGTCAAACCCTAACATTCACCACCCTCAGGCTAGCAATCCA 537
||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 121 ACTCCGGGAACGAGGCCAATGTCAAACCCTAACATTCATCACCCTCAGGCTAACAATCCA 180
Query 538 GGACCTCCTTTCTC-CATGGCT-GAGCACAGGCATTCTGATTTCGGACACAGCATTCACA 595
|||| ||||||||| || | || |||| |||||| | | || | || | | |
Sbjct 181 GGACTTCCTTTCTCGGAT-TTTGGA-CACA-GCATTC--ACAT-GGGGATGGC-TGC-C- 231
Query 596 TGGGGATGGCTTCTCCTGCTGCGGTGCAGCCTACTCTGCAGCTG------CCGCCTCCAC 649
| | | ||||||||||||||||||||||| |||||||||| | ||||| ||||
Sbjct 232 T---G-T-GCTTCTCCTGCTGCGGTGCAGCCGACTCTGCAGCCGCCACCACCGCCCCCAC 286
Query 650 CGTCGGAGCAACCGATGGTTAAGAAGAAACGTGGAAGGCCAAGAAAGTATGTTCCTGATG 709
| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 287 CACCGGAGCAACCGATGGTTAAGAAGAAACGTGGACGGCCAAGAAAGTATGTTGCTGATG 346
Query 710 GACAAGTTTCAT-TGGGGCTTTCTCCAATGCCTTGTGTTAGTAAAAAGTCTAAGGACTCT 768
||||||| || | | |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 347 GACAAGTCTC-TCTAGGGCTTTCTCCAGTGCCTTGTGTTAGTAATAAGTCTAAGGACTCT 405
Query 769 TCTTCAATGTCTGATCCTAATGCACCTAAAAGAGCCAGAGGTCGACCTCCCGGAACTGGA 828
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 406 TCTTCAATGTCTGATCCTAATGCACCTAAACGAGCCAGAGGTCGACCTCCTGGAACTGGA 465
Query 829 AGGAAGCAACGCTTGGCTAATCTTGGTGAGTGGATGAATACATCAGCTGGACTTGCTTTT 888
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 466 AGGAAGCAACGCTTGGCTAATCTTGGTGAGTGGATGAATACTTCAGCTGGACTTGCTTTT 525
Query 889 GCACCTCATGTGATCAGTGTTGGATCAGGAGAAGATATTGTTTCGAAAGTTTTGTCTTTT 948
||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||
Sbjct 526 GCACCTCATGTGATCAGCGTTGGAGCAGGAGAAGACATTGTTTCGAAAGTTTTGTCATTT 585
Query 949 TCACAAAAAAGACCTCGGGCTCTTTGTATAATGTCAGGCACTGGAACGGTTTCTTCAGTC 1008
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 586 TCGCAACAAAGACCTCGGGCTCTTTGTATAATGTCAGGCACTGGAACAATTTCTTCAGCC 645
Query 1009 ACTCTGCGTGAACCCGCTTCAACAACGCCTTCCTTAACATTTGAGGGACGTTTTGAGATT 1068
|||||| | ||||| ||||||||| | ||| | ||||||| |||||||||| |||||||
Sbjct 646 ACTCTGTGCGAACCTGCTTCAACAGCACCTAGCATAACATTCGAGGGACGTTATGAGATT 705
Query 1069 CTAAGTTTAGGTGGATCTTATCTGGTGAATGAAGAAGGTGGATCCAAAAGTCGAACAGGC 1128
|||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 706 CTAAGTTTTGGTGGATCTTATTTGGTGAATGAAGAAGGTGGATCCAGAAGTCGAACAGGC 765
Query 1129 GGTTTGAGTGTCTCTCTTTCTGGT-CCTGAAGGTCATGTTATCGGCGGTGGAATTGGAAT 1187
|| ||||||||||||||||||||| || || |||| | |||| | ||||||| |||| ||
Sbjct 766 GGATTGAGTGTCTCTCTTTCTGGTTCC-GATGGTCGTATTATTGCCGGTGGAGTTGGCAT 824
Query 1188 GCTTATCGCAGCCAGCCTCGTTCAGGTGGTGGCTTGTAGTTTCGTGTACGGAGCAAGTGC 1247
|||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct 825 GCTTATCGCAGCCAGCCTTGTTCAGGTGGTGGCATGTAGTTTTGTATACGGAGCAAGTGC 884
Query 1248 AAAGTCTAATAATAACAATAACAAGACCATCAAACAAGAAATAA-AACCTAA-GCAAGAG 1305
||||||| ||||||||||| |||| ||||||| |||||||| | |||| || | |||||
Sbjct 885 AAAGTCTCATAATAACAATTACAAAACCATCAGACAAGAAA-AGGAACCAAAAG-AAGAG 942
Query 1306 C-CGACCAATAGCGAAATGGAGACCACACCTGGTAGTGCACCAGAAGCTGCAGCATCGAC 1364
| || ||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct 943 GACAAC-AATAGCGAAATGGAGACCACACCCGGTAGTGCACCAGAACCAGCAGCATCGGC 1001
Query 1365 GGGTCA 1370
|| |||
Sbjct 1002 GGCTCA 1007
Score = 113 bits (61), Expect = 4e-24
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1567 GCAGCAGCATACATTATGTGAGTGCTGTACATATCTTTGTTGTTGTAGATTTCTCTCTGG 1626
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2225 GCAGCAGCATACATTATGTGAGTGCTGTACATATCTTTGTTGTTGTAGATTTATTTCTGG 2284
Query 1627 GAATGTT 1633
|||||||
Sbjct 2285 GAATGTT 2291
Score = 91.6 bits (49), Expect = 2e-17
Identities = 56/59 (95%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 169 GCTCACAGCTGAAAATAACCCGACTTTGATTACTGGGTATATAAAAGCCGCCATTGTTG 227
|||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1003 GCTCACAGCTCAAAA-AACCCGACTTTGATTACTGGGTATATAAAAACCGCCATTGTTG 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67800636100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5