BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63500.1
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924606 jgi|Araly1|924606|scaffold_200167.1 2536 0.0
Ahg493852 jgi|Araly1|493852|fgenesh2_kg.7__3285__AT5G41260.1 1718 0.0
> Ahg924606 jgi|Araly1|924606|scaffold_200167.1
Length=1504
Score = 2536 bits (1373), Expect = 0.0
Identities = 1456/1497 (97%), Gaps = 1/1497 (0%)
Strand=Plus/Plus
Query 318 AAC-AATACTGAAATGGGTTGTGAGGTTTCAAAGTTATGTGCATTTTGTTGTGTTTCTGA 376
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AACAAATACTGAAATGGGTTGTGAGGTTTCAAAGTTATGTGCATTTTGTTGTGTTTCTGA 67
Query 377 TCCTGAAGGATCTAATCATGGTGTCACAGGGTTAGATGAAGATAGGAGAGGTGAAGGGAA 436
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 68 ACCTGAAGGATCCAATCATGGAGTCACAGGATTAGATGAAGATAGGAGAGGTGAAGGGAA 127
Query 437 TGATTTGCCTCAGTTTCGTGAATTCTCAATTGAGACGTTGAGGAACGCAACATCAGGATT 496
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 128 TGATTTGCCTCAATTTCGTGAATTCTCAATTGAGACGTTAAGGAACGCAACATCAGGATT 187
Query 497 TGCTACAGAGAATATAGTATCAGAGCATGGTGAAAAAGCTCCAAATGTTGTGTATAAAGG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TGCTACAGAGAATATAGTATCAGAGCATGGTGAAAAAGCTCCAAATGTTGTGTATAAAGG 247
Query 557 GAAATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GAAATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGA 307
Query 617 TTCTCGTCAGTTTCTGGAGGAAGCTAAAGCTGTTGGTCAATTAAGGAATTATAGAATGGC 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTCTCGTCAGTTTCTGGAGGAAGCTAAAGCTGTTGGTCAATTAAGGAATTATAGAATGGC 367
Query 677 AAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCC 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCC 427
Query 737 TAATGAAACTTTGGCTAAGCATCTTTTCCATTGGGAGTCACAACCGATGAAGTGGGCGAT 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 428 TAATGAAACTTTGGCTAAGCATCTTTTCCATTGGGAGTCACAACCGATGAAGTGGGCAAT 487
Query 797 GCGACTAAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACG 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GCGACTAAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACG 547
Query 857 TGCACTCTACCATGACTTAAATGCTTATAGAGTTCTCTTTGATGATGACTCAAATCCAAG 916
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TGCGCTCTACCATGATTTAAATGCTTATAGAGTTCTCTTTGATGATGACTCAAATCCAAG 607
Query 917 ACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGACGGAAAGAGTTATAGCACCAACCT 976
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 608 GCTTTCGTGCTTTGGTCTGATGAAAAATAGTAGAGATGGAAAGAGTTATAGTACCAACCT 667
Query 977 GGCGTTCACTCCTCCAGAGTATCTCAGAACAGGTCGTGTGACACCAGAAAGTGTGATGTA 1036
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 668 GGCGTTCACTCCTCCCGAGTATCTCAGAACAGGTCGCGTGACACCAGAAAGCGTGATGTA 727
Query 1037 CAGTTATGGAACTCTGTTGCTTGATCTTCTTAGTGGAAAACACATTCCTCCAAGTCATGC 1096
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 728 CAGTTATGGAACTCTGTTGCTTGATCTTCTTAGTGGAAAACATATTCCTCCAAGCCATGC 787
Query 1097 TCTGGACCTCATACGGGACAGGAACATTCAAATGTTGATCGACTCATGCTTGGAGGGTCA 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TCTGGACCTCATACGGGACAGGAACATTCAAATGTTGATCGACTCATGCTTGGAGGGTCA 847
Query 1157 ATTTTCAAGCGACGACGGGACTGAACTAATACGGTTAGCTTCTAGATGCTTGCAGTATGA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 ATTTTCAAGCGACGACGGGACTGAACTAATACGGTTAGCTTCTAGATGCTTGCAGTATGA 907
Query 1217 GCCCCGGGAGCGGCCTAACCCGAAGTCTTTAGTTACTGCAATGATCCCTCTACAGAAGGA 1276
|||||| |||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 908 GCCCCGAGAGCGGCCTAACCCAAAGTCTCTAGTTACTGCAATGATTCCTCTACAGAAGGA 967
Query 1277 TCTTGAGACTCCTTCTCATCAACTGATGGGCATACCAAGCAGCGCCTCAACGACACCCCT 1336
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 968 TCTTGAGACTCCTTCTCATCAACTGATGGGCATACCAAGCAGCGCTTCAACGACACCCCT 1027
Query 1337 TTCACCACTTGGAGAAGCATGCCTAAGAACAGATCTAACTGCCATACATGAGATTCTTGA 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TTCACCACTTGGAGAAGCATGCCTAAGAACAGATCTAACTGCCATACATGAGATTCTTGA 1087
Query 1397 AAAGCTTAGCTATAAAGATGACGAGGGTGCAGCAACAGAGCTTTCGTTCCAGATGTGGAC 1456
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1088 AAAGCTTAGCTATAAAGATGATGAGGGTGCAGCCACAGAGCTTTCGTTCCAGATGTGGAC 1147
Query 1457 CAATCAGATGCAGGACTCGCTGAACTTCAAGAAGAAGGGTGATGTTGCTTTCCGACATAA 1516
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1148 CAATCAGATGCAGGACTCGCTGAACTTCAAGAAAAAGGGTGATGTTGCTTTCCGACATAA 1207
Query 1517 AGAATTTGCAAATGCCATCGACTGCTATTCTCAGTTCATTGAGGGTGGGACAATGGTTTC 1576
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1208 AGAATTTGCAAATGCCATTGACTGCTATTCTCAGTTCATTGAGGGCGGGACAATGGTTTC 1267
Query 1577 CCCGACTGTTTATGCAAGAAGAAGTCTGTGTTACCTAATGAATGAGATGCCCCAAGAGGC 1636
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1268 CCCTACTGTTTATGCAAGAAGAAGTCTGTGTTACCTGATGAATGAGATGCCCCAAGAGGC 1327
Query 1637 GCTGAATGATGCAATGCAAGCCCAAGTGATATCTCCGGCTTGGCATATCGCATCGTATCT 1696
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 1328 GCTGAATGATGCAATGCAAGCCCAAGTTATATCTCCTGCTTGGCATATCGCATCCTATCT 1387
Query 1697 TCAAGCTGTAGCTCTATCAGCTCTAGGACAAGAGAACGAAGCACACGCTGCTCTTAAAGA 1756
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1388 TCAAGCTGTAGCTCTATCAGCCCTAGGCCAAGAGAACGAAGCACACGCTGCTCTTAAAGA 1447
Query 1757 CGGATCAATGCTTGAAAGCAAAAGAAACAGGCTATGATGATGATACCAGAAAACACG 1813
|||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 1448 CGGATCAATGCTCGAAAGCAAAAGAAATAGGCTATGATGATGATAGCAGAAAGCACG 1504
> Ahg493852 jgi|Araly1|493852|fgenesh2_kg.7__3285__AT5G41260.1
Length=2133
Score = 1718 bits (930), Expect = 0.0
Identities = 1354/1555 (87%), Gaps = 44/1555 (3%)
Strand=Plus/Plus
Query 290 GTTTAGGGTTTATGGTTTG-ACTAGAA-ACAACAATA-CTGAAATGGGTTGTGAGGTTTC 346
||||||||||||||||||| | | ||| || ||| ||||||||||||||||||
Sbjct 185 GTTTAGGGTTTATGGTTTGTAATTGAATTTTTTTTTATCTGGAATGGGTTGTGAGGTTTC 244
Query 347 AAAGTTATGTGCATTTTGTTGTGTTTCTG-ATCCT-GAAGGATCTAATCATGGTGTCACA 404
|||| ||| |||| ||||||||||||| | || || ||| |||| |||| || ||| |||
Sbjct 245 AAAGCTATCTGCACTTTGTTGTGTTTCAGAAT-CTGGAA-GATCGAATCCTGATGTTACA 302
Query 405 GGGTTAGATGAAGATA-GGAGAGGTGAAGGGAATGATTTGCCTCAGTTTCGTGAATTCTC 463
|| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 303 GGCTTAGATGAAGA-AGGGAGAGGTGAATCGAATGATTTGCCTCAGTTTCGTGAATTCTC 361
Query 464 AATTGAGACGT-TGAGGAACGCAACATCAGGATTTGCTA-CAGAGAATATAGTATCAGAG 521
|| ||||| | | |||||||| || ||||||||||| | ||||||||||||| ||||||
Sbjct 362 TATAGAGAC-TATAAGGAACGCTACTTCAGGATTTGC-AGCAGAGAATATAGTTTCAGAG 419
Query 522 CATGGTGAAAAAGCTCCAAATGTTGTGTATAAAGGGAA-ATTGGATAATCAAAGACGTAT 580
|||||||| | ||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct 420 CATGGTGAGAGAGCTCCAAATGTTGTTTATAAAGGGAAGCTT-GAGAATCAAAGACGTAT 478
Query 581 TGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGATTCTCGTCAGTTTC-TGGAGGAAG 639
|||||| ||||||||||| |||||| |||||||||| |||||||| ||| |||| ||||
Sbjct 479 TGCTGTCAAAAGGTTTAACAGGAAATCTTGGCCTGAGTCTCGTCA-ATTCTTGGAAGAAG 537
Query 640 CTAAAGCTGTTGGTCAATTAAGGAATTATAGAATGGCAAATCTTCTTGGATGTTGTTATG 699
| |||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| ||||
Sbjct 538 CCAAAGCTGTTGGTCAATTACGGAATCATAGGATGGCAAATCTACTTGGATGTTGCTATG 597
Query 700 AAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCCTAATGAAACTTTGGCTAAGCATC 759
|||||||||||||||| ||| |||| |||||||||||||||||||||||||| || ||||
Sbjct 598 AAGGTGAAGAGAGACTACTTATTGCAGAGTTTATGCCTAATGAAACTTTGGCAAAACATC 657
Query 760 TTTTCCATTGGGAGTCACAACCGATGAAGTGGGCGATGCGACTAAGAGTAGCTTTACATA 819
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 658 TTTTCCACTGGGAGTCACAACCAATGAAGTGGGCGATGCGTCTAAGAGTAGCTTTGCATA 717
Query 820 TTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACGTGCACTCTACCATGACTTAAATG 879
||||||| || |||| |||||||| |||||||||||||||| ||||||||| ||||||
Sbjct 718 TTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATG 777
Query 880 CTTATAGAGTTCTCTTTGATGATGACT-CAAATCCAAGACTTTCATGCTTCGGTCTGATG 938
||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||||
Sbjct 778 CTTATAGAGTTCTCTTTGATGATGA-TGCAAATCCAAGACTTTCATGCTTTGGTTTGATG 836
Query 939 AAAAATAGTAGAGACGGAAAGAGTTATAGCACCAACCTGGCGTTCACTCCTCCAGAGTAT 998
||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct 837 AAAAACAGTAGAGATGGAAAGAGTTACAGCACTAACCTGGCATTCACTCCTCCCGAGTAT 896
Query 999 CTCAGAACAGGTCGTGTGACACCAGAAAGTGTGATGTACAG-TTATGGAACTCTGTTGCT 1057
|| || || ||||| |||||||| ||||||||||| ||||| || ||||||||| || ||
Sbjct 897 CTGAGGACCGGTCGCGTGACACCCGAAAGTGTGATATACAGCTT-TGGAACTCTATTACT 955
Query 1058 TGATCTTCTTAGTGGAAAACACATTCCTCCAAGTCATGC-TCTGGACCTCATACGGGACA 1116
||| ||||| |||||||| ||||| |||||||| ||||| | ||||||||||||||||||
Sbjct 956 TGACCTTCTGAGTGGAAAGCACATACCTCCAAGCCATGCGT-TGGACCTCATACGGGACA 1014
Query 1117 GGAACATTCAAATGTTGATCGACTCATGCTTGGAGGGTCAATTTTCAAGCGACGACGGGA 1176
|||||||||| ||| |||| || ||| | |||||||||||||||||||| ||||| ||||
Sbjct 1015 GGAACATTCAGATGCTGATGGATTCAGGTTTGGAGGGTCAATTTTCAAGTGACGATGGGA 1074
Query 1177 CTGAACTAATACGGTTAGCTTCTAGATGCTTGCAGTATGAGCCCCGGGAGCGGCCTAACC 1236
||||| ||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1075 CTGAATTAATAAGGTTAGCTTCAAGATGCTTGCAGTATGAACCCCGAGAGCGGCCTAACC 1134
Query 1237 CGAAGTCTTTAGT-TACTGCAATGATCCCTCTACAGAAGGATCTTGAGACTCCTTCTCAT 1295
| || |||||||| | |||||||||| ||||| ||||| |||||||||| | ||||||||
Sbjct 1135 CAAAATCTTTAGTCT-CTGCAATGATTCCTCTTCAGAAAGATCTTGAGATTGCTTCTCAT 1193
Query 1296 CAACTGATGGGCATACC-AAGCAGCGCCTCAACGAC-ACCCCTTTCACCACTTGGAGAAG 1353
||| || |||||||||| || ||| ||| |||| || || | ||||||||||||| ||||
Sbjct 1194 CAATTGTTGGGCATACCTAA-CAGTGCCACAACCACCACTC-TTTCACCACTTGGCGAAG 1251
Query 1354 CATGCCTAAGAACAGATCTAACTGCCATACATGAGATTC-TTGAAAAGCTTAGCTATAAA 1412
||||||||||| ||||||||||||| ||||||||||| | ||||||||||| | |||||
Sbjct 1252 CATGCCTAAGACCAGATCTAACTGCTATACATGAGAT-CATTGAAAAGCTTGGATATAAG 1310
Query 1413 GATGACGAGGGTGCAGCAACAGAGCTTTCGTTCCAGATGTGGACCAATCAGATGCAGGAC 1472
||||||||||||||| | ||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 1311 GATGACGAGGGTGCAACCACAGAGCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGAC 1370
Query 1473 TCGCTGAACTTCAAGAAGAAGGGTGATGT-TGCTTTCCGACATAAAGAATTTGCAAATGC 1531
| || ||||||||| ||||| ||| | ||| |||||||||||||| |||||||| ||
Sbjct 1371 ACATTGGTCTTCAAGAAAAAGGGGGAT-TCTGCATTCCGACATAAAGACTTTGCAAAGGC 1429
Query 1532 CATCGACTGCTATTCTCAGTTCATTGAGGGTGGG-ACAATGGTTTCCCCGACTGTTTATG 1590
|||||| || | |||||||||||| |||| | || |||||||||||||| ||||||||||
Sbjct 1430 CATCGAATGTTTTTCTCAGTTCATCGAGG-TAGGTACAATGGTTTCCCCAACTGTTTATG 1488
Query 1591 CAAGAAGAAGTCTGTGTTACCTAATGAATGAGATGCCCCAAGAGGCGCTGAATGATGCAA 1650
||||| | ||||| ||||||||||||||||||||||| |||| || || ||||||||||
Sbjct 1489 CAAGACGTAGTCTATGTTACCTAATGAATGAGATGCCTAAAGAAGCACTAAATGATGCAA 1548
Query 1651 TGCAAGCCCAAGTGATATCTCCGGCTTGGCATATCGCATCGTATCTTCAAGCTGTAGCTC 1710
||||||||||||| |||||||| || ||||| |||||||| ||||| ||||||||||||
Sbjct 1549 TGCAAGCCCAAGTCATATCTCCTGCGTGGCACATCGCATCCTATCTCCAAGCTGTAGCTT 1608
Query 1711 TATCAGCTCTAGGACAAGAGAACGAAGCACACGCTGCTCTTAAAGACGGAT-CAATGCTT 1769
| |||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||
Sbjct 1609 TGTCAGCTCTAGGACAAGAGAATGAAGCACACGCTGCTCTAAAAGACGG-TGCAATGCTT 1667
Query 1770 GAAAGCAAAAGAAACAGGCTATGATGATGATACCAGAAAACACGAAGAGGA-AAA 1823
|||||||||||||||| || || |||| ||| || ||| | |||||||| |||
Sbjct 1668 GAAAGCAAAAGAAACA--CTTTG-TGATAATA--AGTAAA-AGGAAGAGGAGAAA 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86198224435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5