BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63520.1
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475003 jgi|Araly1|475003|fgenesh2_kg.2__133__AT1G63520.1 2490 0.0
> Ahg475003 jgi|Araly1|475003|fgenesh2_kg.2__133__AT1G63520.1
Length=1963
Score = 2490 bits (1348), Expect = 0.0
Identities = 1583/1696 (93%), Gaps = 17/1696 (1%)
Strand=Plus/Plus
Query 211 CAAAAGATGGCACAGAGTTCTGAAAATGTTCTTCCTACTCTACGAGATTTCTTCGATTCT 270
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 168 CAAAAGATGGCACAGAGTTCTGAAAATGTTCTTCCTACTCTACGAGATTTTTTCGATTCT 227
Query 271 AAAAAGGCTGGGGAAGAGGACGAGTTTTTGTTTTATCGGGCGCTTAACTCCTCGTGCAAG 330
|||||||| ||||||||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 228 AAAAAGGCAGGGGAAGAGGATGAGTTTATGTTTTATCGGGCGATTAACTCCTCGTGCAAG 287
Query 331 AAACCTCCAAAACCGGGAAACAAGGCGAAGGAGAGACATGGTTTCTTCAATCAGGGATCC 390
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 288 AAACCTCCAAAACCGGGAAACAAGGCGAAAGAGAGACATGGTTTTTTCAATCAGGGATCC 347
Query 391 AAGGAGAGAAGAAGAAGGAAAATATCAGATGCTGAAAAGTTTTCAGTGGAACAATATTCT 450
||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||| |||
Sbjct 348 AAGGAAAGAAGAAGAAGGAACATATCTGATGCTGAAAAGTTTTCAGTTGAGCAATACTCT 407
Query 451 TCTGGTGGTTTTTTCGGTGTACGGTTGAACACGAATGGGAGacaacaacaacaacaacaa 510
||||||||||||||||| |||||||||||||||||| || | | ||| || |||||||||
Sbjct 408 TCTGGTGGTTTTTTCGGGGTACGGTTGAACACGAAT-GG-G-CGACATCAGCAACAACAA 464
Query 511 cGATTAGCTAAGCCTTTA-GTTACAGAGAGAAACATGGAACCGAGGTTGCAAAAGTCACT 569
|||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||| |
Sbjct 465 CGATTAGCTAAGCCTTTAGGTT-CAGAGAGAAACATGGAACCAAGATTGCAAAAGTCATT 523
Query 570 CTCTGCTAGAATGCAATTCCCATTTATGCCTTCTTCAAAGGGAAGCAATGAGTCTTCTTC 629
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 524 CTCTGCTAGAATGCAACTCCCGTTTATGCCTTCTTCAAAGGGAAGCAATGAGTCTTCTTC 583
Query 630 TACTAATACTTCAAGCTCAACGAGCTGGTTTAACCGTATCAAGAAAATGTCCAATCCATT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TACTAATACTTCAAGCTCAACGAGCTGGTTTAACCGTATCAAGAAAATGTCCAATCCATT 643
Query 690 TTCAAACAGAAATCCTCTGTTACCAGAATCAGGCCAAGAAATGTTCTCAAGAAACAAGTC 749
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 644 CTCAAACAGAAATCCTCTGTTACCAAAATCAGGTGAAGAAATGTTCTCAAGAAACAAGTC 703
Query 750 TTCACCTGTTCATCTACATGCTCATCTAAGGATGGAATATGAACTTGGGATGCCTGTTTT 809
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 704 TTCACCTGTTCATCTACATGCTCATCTCAGTATGGAATATGAACTTGGGATGCCTGTTTT 763
Query 810 CATATTCTCGCTAGACCTCCCGGATGATGTATATATGGCCAGTACAAGAATGGATGATAA 869
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CATCTTCTCGCTAGACCGCCCGGATGATGTATATATGGCCAGTACAAGAATGGATGATAA 823
Query 870 GGAATCTCGGTTTGTCTATTCGTTTAGCTACATTGGAGGTAGAAGCAATAAGAATGTTTC 929
|| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 824 TGACTCTCGGTTCGTCTATTCGTTTCGCTACATTGGTGGTAGAAGCAATAAGAATGTTTC 883
Query 930 AGGTAAAGAATCTTCACTAATAGGACAGATGCAAGTTTCAACTCAAATCTGCTTAGAGCA 989
|||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 884 AGGTCAAGAATCTTCACTAATAGGACAGATGCAAGTTTCATCTCAGATCTGCTTAGAGCA 943
Query 990 AGAACCATATGAAGAAGATCTTGTGGCATCAACTGTCTCTGAATTCGTTCTTTTCGACAT 1049
|||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 944 AGAACCATATGAAGAAGATCTTGTGGAATCAACTGTGTCTGAATTCGTTCTATTCGACAT 1003
Query 1050 TGCACGCGCAAGGAGAAGTGGCTTCAAGCATGAAAACCTGTCAAGACAAAACAGTTTCAG 1109
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1004 CGCACGTGCAAGGAGAAGTGGCTTCAAGCATGAAAACCTGTCAAGACAGAACAGTTTCAG 1063
Query 1110 ACGAGGATTGATATTTTCAGAAACAGAGAACTCTGTATCTGATCTACTACAAGAAAAGCT 1169
|||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 1064 ACGAGGATCGATATTTTCAGAAACAGAGAACTCTGCATCTGATCAAATACAAGAAAAGCT 1123
Query 1170 GCCAAGGCAGAACAGTTTCAATCGAGGATTGACTCGTAGTCTATCAAAACATTCAGAGAA 1229
|||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 1124 CCCAAGGCAGAACAGTTTCAACCGAGGATTGACTCGTAGTCTATCGAAACGTTCAGAGAA 1183
Query 1230 CACTGCATCTGGTCCTTGGCCTGTCTCAGATTTACATCCAGGACTTGAGATTGCAGCAAT 1289
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1184 CACTGCATCTGATCCTTGGCCTGTCTCAGATTTACATCCAGGACTAGAGATTGCAGCAAT 1243
Query 1290 TGTTATTCAAGACTCTTCTTCAAACAGCAAACT-CTCGAGTCGTGAGATGAAAGTCATAG 1348
||||||||||||||||||| ||||||| ||||| | ||||||| | ||||||||||||||
Sbjct 1244 TGTTATTCAAGACTCTTCTACAAACAGTAAACTAC-CGAGTCGAGCGATGAAAGTCATAG 1302
Query 1349 TTCCAACAGGAAACCACGGTTTGCCTGATACCGAAAACTCGTGTCCTACGCCGATACTGC 1408
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 1303 TTCCAACAGGAAACCACGGTTTTCCTGATACCGAAAACTCATGTCCTACACCGATACTGC 1362
Query 1409 AAAGATGGAGATCAGGTGGAGGTTGTGACTGTAGCGGATGGGACATGGGATGTCACCTTT 1468
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1363 AAAGATGGAGATCAGGTGGAGGCTGTGACTGTAGCGGATGGGACATGGGCTGTCACCTTT 1422
Query 1469 TTGTCCTTGAATCTCCAGAACTCATCAACAATCATCATGGTTTGGAACTTTTCATAGAGA 1528
|||| || |||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1423 TTGTTCTAGAATCTCCAGAACTCACCAACGATCATCTTGGTTTGGAACTTTTCATAGAGG 1482
Query 1529 GTGGGAAAGAGATCACACCAGCAATGACAATGACATGTATCAGAGAAGGACATTATGAGG 1588
||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||||
Sbjct 1483 GTGGGAAAGAGATCACACCAGCAATCACAATGGTGTTTATCAGAGAAGGACATTACGAGG 1542
Query 1589 TAAAATTTCACGCGAAGCTCTCAGCATTACAAGCATTCTCAATCTGTGTAGCCGAGCTGC 1648
|||| || ||||||||||| ||||| ||||||||||||||| ||||||| |||||| | |
Sbjct 1543 TAAACTTCCACGCGAAGCTATCAGCTTTACAAGCATTCTCAGTCTGTGTCGCCGAGTTTC 1602
Query 1649 AAAGAACTGAAGTCTCAAGAGGAGAAAGAAACATATCTTTGTCTAGATGCAGTTCACTCA 1708
| |||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 1603 ACAGAAGTGAAGTCTCAAGAATAGAGAGAAACATCTCTTTGTCTAGATGCAGTTCACTCA 1662
Query 1709 GAGAGCTTATTGAAATGGAAACTCCGATGAATACAAGAGAAGTCC-TTCCTTCTTTCATG 1767
|||||||||| ||||||||||||||| ||||| |||| ||||||| ||| ||||||||||
Sbjct 1663 GAGAGCTTATCGAAATGGAAACTCCGGTGAATTCAAGGGAAGTCCCTTC-TTCTTTCATG 1721
Query 1768 CCTAATGTCACATTCTCTCCAATCTCAAGGGTTTAAAAACACATCACAAAGTAATCAATC 1827
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1722 CCTAATGTCACATTCTCTCCAATCTCAAGGGTTTAAAA-CACATCACAAAGTAA-C---C 1776
Query 1828 TCTAG-TCCCTCTTATGTGCATATATA--GTCACTATACATACCATACAAATAAATATCA 1884
||||| | ||||||||||||||||||| |||| |||||||||||||||||||| |||||
Sbjct 1777 TCTAGCTTCCTCTTATGTGCATATATATAGTCATTATACATACCATACAAATAAGTATCA 1836
Query 1885 GCCAGAATCTAGCTAC 1900
||||||||||||||||
Sbjct 1837 GCCAGAATCTAGCTAC 1852
Score = 106 bits (57), Expect = 7e-22
Identities = 92/107 (86%), Gaps = 10/107 (9%)
Strand=Plus/Plus
Query 19 CTTTAGATCTGTAAGAGCGTAGGCTAAAATTT-TTGACTTCTCTATC-TAGAGTTTGCTA 76
|||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||| |
Sbjct 1 CTTTAGATCTGTAAGAGCGTAGGCTAAATTTTATTGACTTCTCTATCCTAGATTTTGCAA 60
Query 77 TTTTAACTTC--TCTTTGTGTAAAAGTTCATAATCAGTGATAGTTTC 121
|||||||||| ||||||| ||| ||| || |||||| ||||||
Sbjct 61 TTTTAACTTCCCTCTTTGT-TAAG-GTT-AT---CAGTGACAGTTTC 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77970731515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5