BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63520.1 Length=2073 Score E Sequences producing significant alignments: (Bits) Value Ahg475003 jgi|Araly1|475003|fgenesh2_kg.2__133__AT1G63520.1 2490 0.0 > Ahg475003 jgi|Araly1|475003|fgenesh2_kg.2__133__AT1G63520.1 Length=1963 Score = 2490 bits (1348), Expect = 0.0 Identities = 1583/1696 (93%), Gaps = 17/1696 (1%) Strand=Plus/Plus Query 211 CAAAAGATGGCACAGAGTTCTGAAAATGTTCTTCCTACTCTACGAGATTTCTTCGATTCT 270 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 168 CAAAAGATGGCACAGAGTTCTGAAAATGTTCTTCCTACTCTACGAGATTTTTTCGATTCT 227 Query 271 AAAAAGGCTGGGGAAGAGGACGAGTTTTTGTTTTATCGGGCGCTTAACTCCTCGTGCAAG 330 |||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||| Sbjct 228 AAAAAGGCAGGGGAAGAGGATGAGTTTATGTTTTATCGGGCGATTAACTCCTCGTGCAAG 287 Query 331 AAACCTCCAAAACCGGGAAACAAGGCGAAGGAGAGACATGGTTTCTTCAATCAGGGATCC 390 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 288 AAACCTCCAAAACCGGGAAACAAGGCGAAAGAGAGACATGGTTTTTTCAATCAGGGATCC 347 Query 391 AAGGAGAGAAGAAGAAGGAAAATATCAGATGCTGAAAAGTTTTCAGTGGAACAATATTCT 450 ||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||| ||| Sbjct 348 AAGGAAAGAAGAAGAAGGAACATATCTGATGCTGAAAAGTTTTCAGTTGAGCAATACTCT 407 Query 451 TCTGGTGGTTTTTTCGGTGTACGGTTGAACACGAATGGGAGacaacaacaacaacaacaa 510 ||||||||||||||||| |||||||||||||||||| || | | ||| || ||||||||| Sbjct 408 TCTGGTGGTTTTTTCGGGGTACGGTTGAACACGAAT-GG-G-CGACATCAGCAACAACAA 464 Query 511 cGATTAGCTAAGCCTTTA-GTTACAGAGAGAAACATGGAACCGAGGTTGCAAAAGTCACT 569 |||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||| | Sbjct 465 CGATTAGCTAAGCCTTTAGGTT-CAGAGAGAAACATGGAACCAAGATTGCAAAAGTCATT 523 Query 570 CTCTGCTAGAATGCAATTCCCATTTATGCCTTCTTCAAAGGGAAGCAATGAGTCTTCTTC 629 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 524 CTCTGCTAGAATGCAACTCCCGTTTATGCCTTCTTCAAAGGGAAGCAATGAGTCTTCTTC 583 Query 630 TACTAATACTTCAAGCTCAACGAGCTGGTTTAACCGTATCAAGAAAATGTCCAATCCATT 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 TACTAATACTTCAAGCTCAACGAGCTGGTTTAACCGTATCAAGAAAATGTCCAATCCATT 643 Query 690 TTCAAACAGAAATCCTCTGTTACCAGAATCAGGCCAAGAAATGTTCTCAAGAAACAAGTC 749 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 644 CTCAAACAGAAATCCTCTGTTACCAAAATCAGGTGAAGAAATGTTCTCAAGAAACAAGTC 703 Query 750 TTCACCTGTTCATCTACATGCTCATCTAAGGATGGAATATGAACTTGGGATGCCTGTTTT 809 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 704 TTCACCTGTTCATCTACATGCTCATCTCAGTATGGAATATGAACTTGGGATGCCTGTTTT 763 Query 810 CATATTCTCGCTAGACCTCCCGGATGATGTATATATGGCCAGTACAAGAATGGATGATAA 869 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 764 CATCTTCTCGCTAGACCGCCCGGATGATGTATATATGGCCAGTACAAGAATGGATGATAA 823 Query 870 GGAATCTCGGTTTGTCTATTCGTTTAGCTACATTGGAGGTAGAAGCAATAAGAATGTTTC 929 || |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 824 TGACTCTCGGTTCGTCTATTCGTTTCGCTACATTGGTGGTAGAAGCAATAAGAATGTTTC 883 Query 930 AGGTAAAGAATCTTCACTAATAGGACAGATGCAAGTTTCAACTCAAATCTGCTTAGAGCA 989 |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 884 AGGTCAAGAATCTTCACTAATAGGACAGATGCAAGTTTCATCTCAGATCTGCTTAGAGCA 943 Query 990 AGAACCATATGAAGAAGATCTTGTGGCATCAACTGTCTCTGAATTCGTTCTTTTCGACAT 1049 |||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| Sbjct 944 AGAACCATATGAAGAAGATCTTGTGGAATCAACTGTGTCTGAATTCGTTCTATTCGACAT 1003 Query 1050 TGCACGCGCAAGGAGAAGTGGCTTCAAGCATGAAAACCTGTCAAGACAAAACAGTTTCAG 1109 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1004 CGCACGTGCAAGGAGAAGTGGCTTCAAGCATGAAAACCTGTCAAGACAGAACAGTTTCAG 1063 Query 1110 ACGAGGATTGATATTTTCAGAAACAGAGAACTCTGTATCTGATCTACTACAAGAAAAGCT 1169 |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||| Sbjct 1064 ACGAGGATCGATATTTTCAGAAACAGAGAACTCTGCATCTGATCAAATACAAGAAAAGCT 1123 Query 1170 GCCAAGGCAGAACAGTTTCAATCGAGGATTGACTCGTAGTCTATCAAAACATTCAGAGAA 1229 |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| Sbjct 1124 CCCAAGGCAGAACAGTTTCAACCGAGGATTGACTCGTAGTCTATCGAAACGTTCAGAGAA 1183 Query 1230 CACTGCATCTGGTCCTTGGCCTGTCTCAGATTTACATCCAGGACTTGAGATTGCAGCAAT 1289 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1184 CACTGCATCTGATCCTTGGCCTGTCTCAGATTTACATCCAGGACTAGAGATTGCAGCAAT 1243 Query 1290 TGTTATTCAAGACTCTTCTTCAAACAGCAAACT-CTCGAGTCGTGAGATGAAAGTCATAG 1348 ||||||||||||||||||| ||||||| ||||| | ||||||| | |||||||||||||| Sbjct 1244 TGTTATTCAAGACTCTTCTACAAACAGTAAACTAC-CGAGTCGAGCGATGAAAGTCATAG 1302 Query 1349 TTCCAACAGGAAACCACGGTTTGCCTGATACCGAAAACTCGTGTCCTACGCCGATACTGC 1408 |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| Sbjct 1303 TTCCAACAGGAAACCACGGTTTTCCTGATACCGAAAACTCATGTCCTACACCGATACTGC 1362 Query 1409 AAAGATGGAGATCAGGTGGAGGTTGTGACTGTAGCGGATGGGACATGGGATGTCACCTTT 1468 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1363 AAAGATGGAGATCAGGTGGAGGCTGTGACTGTAGCGGATGGGACATGGGCTGTCACCTTT 1422 Query 1469 TTGTCCTTGAATCTCCAGAACTCATCAACAATCATCATGGTTTGGAACTTTTCATAGAGA 1528 |||| || |||||||||||||||| |||| |||||| |||||||||||||||||||||| Sbjct 1423 TTGTTCTAGAATCTCCAGAACTCACCAACGATCATCTTGGTTTGGAACTTTTCATAGAGG 1482 Query 1529 GTGGGAAAGAGATCACACCAGCAATGACAATGACATGTATCAGAGAAGGACATTATGAGG 1588 ||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||| Sbjct 1483 GTGGGAAAGAGATCACACCAGCAATCACAATGGTGTTTATCAGAGAAGGACATTACGAGG 1542 Query 1589 TAAAATTTCACGCGAAGCTCTCAGCATTACAAGCATTCTCAATCTGTGTAGCCGAGCTGC 1648 |||| || ||||||||||| ||||| ||||||||||||||| ||||||| |||||| | | Sbjct 1543 TAAACTTCCACGCGAAGCTATCAGCTTTACAAGCATTCTCAGTCTGTGTCGCCGAGTTTC 1602 Query 1649 AAAGAACTGAAGTCTCAAGAGGAGAAAGAAACATATCTTTGTCTAGATGCAGTTCACTCA 1708 | |||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||| Sbjct 1603 ACAGAAGTGAAGTCTCAAGAATAGAGAGAAACATCTCTTTGTCTAGATGCAGTTCACTCA 1662 Query 1709 GAGAGCTTATTGAAATGGAAACTCCGATGAATACAAGAGAAGTCC-TTCCTTCTTTCATG 1767 |||||||||| ||||||||||||||| ||||| |||| ||||||| ||| |||||||||| Sbjct 1663 GAGAGCTTATCGAAATGGAAACTCCGGTGAATTCAAGGGAAGTCCCTTC-TTCTTTCATG 1721 Query 1768 CCTAATGTCACATTCTCTCCAATCTCAAGGGTTTAAAAACACATCACAAAGTAATCAATC 1827 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 1722 CCTAATGTCACATTCTCTCCAATCTCAAGGGTTTAAAA-CACATCACAAAGTAA-C---C 1776 Query 1828 TCTAG-TCCCTCTTATGTGCATATATA--GTCACTATACATACCATACAAATAAATATCA 1884 ||||| | ||||||||||||||||||| |||| |||||||||||||||||||| ||||| Sbjct 1777 TCTAGCTTCCTCTTATGTGCATATATATAGTCATTATACATACCATACAAATAAGTATCA 1836 Query 1885 GCCAGAATCTAGCTAC 1900 |||||||||||||||| Sbjct 1837 GCCAGAATCTAGCTAC 1852 Score = 106 bits (57), Expect = 7e-22 Identities = 92/107 (86%), Gaps = 10/107 (9%) Strand=Plus/Plus Query 19 CTTTAGATCTGTAAGAGCGTAGGCTAAAATTT-TTGACTTCTCTATC-TAGAGTTTGCTA 76 |||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||| | Sbjct 1 CTTTAGATCTGTAAGAGCGTAGGCTAAATTTTATTGACTTCTCTATCCTAGATTTTGCAA 60 Query 77 TTTTAACTTC--TCTTTGTGTAAAAGTTCATAATCAGTGATAGTTTC 121 |||||||||| ||||||| ||| ||| || |||||| |||||| Sbjct 61 TTTTAACTTCCCTCTTTGT-TAAG-GTT-AT---CAGTGACAGTTTC 101 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77970731515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5