BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63522.1
Length=278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475002 jgi|Araly1|475002|fgenesh2_kg.2__132__AT1G63522.1 274 2e-73
Ahg924602 jgi|Araly1|924602|scaffold_200163.1 235 1e-61
> Ahg475002 jgi|Araly1|475002|fgenesh2_kg.2__132__AT1G63522.1
Length=160
Score = 274 bits (148), Expect = 2e-73
Identities = 156/160 (98%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 19 TATATGTATATAGGTGTGGTGATGAGTGCAAGGATACAAGAAAGCACAAACGATATATTG 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATATGTATATAGGTGTGGTGATGAGTGCAAGGATACAAGAAAGCACAAACGATATATTG 60
Query 79 AAGCCTATAACATGCAATACCAATGCAGATTGTGCCAAGTTTTGCAAAGGTCCAATCCAC 138
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCCTATAACATGCAATAGCAATGCAGATTGTGCCAAGTTTTGCAAAGGTCCAATCCAC 120
Query 139 AACTGTGTCTATCATACTTGTCAATGCGTACCCGGAAATC 178
||||| || | |||||||||||||||||||||||||||||
Sbjct 121 AACTGCGTATTTCATACTTGTCAATGCGTACCCGGAAATC 160
> Ahg924602 jgi|Araly1|924602|scaffold_200163.1
Length=196
Score = 235 bits (127), Expect = 1e-61
Identities = 162/178 (91%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 25 TATATAGGTGTGGTGATGAGTGCAAGGATACAAGAAAGCACAAAC-G-ATA-TATTGAAG 81
||||||||||||||||||||||| ||||| |||||||||| |||| | ||| ||||||||
Sbjct 6 TATATAGGTGTGGTGATGAGTGCTAGGATGCAAGAAAGCAAAAACGGTATATTATTGAAG 65
Query 82 CCTATAACATGCAATACCAATGCAGATTGTGCCAAGTTTTGCAAAGGTCCAATCCACAAC 141
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 66 CCTATGACATGCAATACCAATGCAGATTGTGCTAAGTTTTGCAAAGGTCCAATCCACAAC 125
Query 142 TGTGTCTATCATACTTGT-CAATGCGTACCCGGAAATCCTCATTGTTGCTAGAAACAC 198
|| | |||||||||||| | || ||||| |||||||||||||||||||||||||||
Sbjct 126 TGCCTATATCATACTTGTGCC-TGTGTACCGGGAAATCCTCATTGTTGCTAGAAACAC 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9691519606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5