BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63530.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907056 jgi|Araly1|907056|Al_scaffold_0002_137 1552 0.0
Ahg475001 jgi|Araly1|475001|fgenesh2_kg.2__131__AT1G63540.1 274 2e-72
> Ahg907056 jgi|Araly1|907056|Al_scaffold_0002_137
Length=1527
Score = 1552 bits (840), Expect = 0.0
Identities = 1125/1255 (90%), Gaps = 49/1255 (4%)
Strand=Plus/Plus
Query 381 CCACACCCATTAGCTTCCTCCCATTTGGTTACGTCCCACCACCTCCA-C-CG-AGTTCTT 437
|||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 293 CCACACCCATTAGCTTCCTCCCATTTGGTTACGTGCCACCACCTCCACCGCGTGGTTCTT 352
Query 438 CACTGTCTGGGCCAGCGCAAAATGTGCCTTGGAG-TATTAGTGCTTATTCTACTGCAGGG 496
|||||| ||||||||||||| || |||||||| | | ||| | ||||||||| ||| |
Sbjct 353 CACTGTTTGGGCCAGCGCAAGATATGCCTTGG-GCTCTTAATTCTTATTCTA---CAGAG 408
Query 497 CGCGGTGTTGAATGGGCCTGGGCCAGACCCGATGTTGCTGTCTAT-CCAGCAtcctcctc 555
||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 409 CGCGGTGTTGAATGGGCCTGGGCCAGACCCGATGTTGGTGTCT-TGCCAGCA-------- 459
Query 556 ctcctcctcTACTAGTACAGTAGTTTTTGGTACAACACCAGTGAGTGTTTCTTCACTGTT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 -TCCTCCTCTACTAGTACAGTAGTTTTTGGTACAACACCAGTGAGTGTTTCTTCACTGTA 518
Query 616 TGGGCCGTCCCAAGATTTCCCCAAGACTACTTTTG-CTTGTTG-TTCAAGCACCCCAGCA 673
|||||||||||||||||| ||||||| ||||| || || || | ||||||||||||||||
Sbjct 519 TGGGCCGTCCCAAGATTTTCCCAAGAATACTTCTGTCT-GT-GCTTCAAGCACCCCAGCA 576
Query 674 CCTACAAGGTGTGAATGTTCTTTTGCTAAACCtttttttGGTTCCTCGCCTGCATCTTCC 733
|||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 577 CCTACAAGGTGTGAATGTTCTTTTGCTAGACCTAGTTTTGGTTCCTCGCCAGCATCTTCA 636
Query 734 TCTTCTAACCTTTTTGGACCAAACCCATCGACGACTACTGCATCAGTTTTTGGTACATCT 793
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 637 TCTTCTAACCTTTTCGGACCAAACCCTTCGAC---TACTGCATCAGTTTTTGGTACATCT 693
Query 794 GCAACGAGTGGTTCTTCACTTTTTGGGCCAGCGCAACATCCACTAAGTTACGACTCTATT 853
|||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 694 GCAACGAGTGTTTCTTCACTTTTTGCGCCAGCGCAACATCCACTAAGTTACTACTCTGTT 753
Query 854 GGTGGTTCAGCCTTTGCTGGTGTTAAAACATCATCTCCTCAACCTCTTGGTTTCAATGGA 913
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 754 GGTGGTTCAGCCTTTGCTGGTGTTAAAACATCATCTCCTCAACCTTTTGGTTTCAATGGA 813
Query 914 GCTACTACTCTCTTGCCGAGCTCGCATGAGGGACAAAACATATCTTCTTTCAAGCCTTAT 973
|||||||||||||||| |||||||||||| |||||||| |||||| ||| ||| ||||||
Sbjct 814 GCTACTACTCTCTTGCGGAGCTCGCATGATGGACAAAATATATCTGCTTCCAACCCTTAT 873
Query 974 GTAGATAAAAGCCATGATGAATTAAGGTGGGAATATTACAAGAAAGAAGCTAAAGGTGGG 1033
|||| ||||||| ||| ||||||||||||||| |||||||||||| || || |||||||
Sbjct 874 CTAGACAAAAGCCCTGAAGAATTAAGGTGGGAAGATTACAAGAAAGGAGGTATAGGTGGG 933
Query 1034 TCGTTTCCTGCTGCTCATGCCTCTCCCATAGGCTCAA-AGCCAAACGCTGTGTTTTCACC 1092
||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||
Sbjct 934 TCGTTTCCTGCTGCTCATGCCTCTCCCATAGGCTCAAGACCCAA-CGCTGTTTTTTCACC 992
Query 1093 ATCAACGGTATCGACATCATTATTTGCTTCTCCAAGCGTACCTGATCATCATCAGAGGAC 1152
|||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ATCAACTGTGTCGCCATCAATATTTGCTTCTCCAAGCGTACCTGATCATCATCAGAGGAC 1052
Query 1153 AAATTTTAGTACAACGCTAGGAAACTTTACTGGTCCTGCTTTTGGTTTCTTCCCTGCTGC 1212
||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1053 AAACTTTGGTACAACGCAAGGAAACTTTAATGGTCCTGCTTTTGGTTTCTTCCCTGCTTC 1112
Query 1213 TGCTGGTGGTGCTACAACATTTTCATCTACCGGTTTCGGTCAACCTAATGCGCCTTTCCC 1272
|||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 1113 TGCTGGTGGTACAACAACATTTTCACCTAGTGGTTTCGGTCAACCTAATGCGCCTTTCAC 1172
Query 1273 TGGTTTCGATTCCCAGTTTCCGAGCGCTTTTTCATCTTTCTCGACGACATATCCTGCCGT 1332
| |||||||| ||||||||||||| |||||||||| ||||| || |||| ||||||||
Sbjct 1173 TAGTTTCGATACCCAGTTTCCGAGTTCTTTTTCATCGTTCTCTACTACATTTCCTGCCGA 1232
Query 1333 AAGCTCGAGTGTTCAGAGACCCCATGAAACAGGTGCTGTTTCTTCCCCAGCATTTGGATG 1392
|||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1233 AAGCTCCTGTATTCAGAGACCCCATGAAACAGCTGCTGTTTCTTCCCCAGCATTTGGATG 1292
Query 1393 CACAGCCTGTGGAGCAACAAGTAGCTCCTCTGCTTCTGATCACTTCACCTTTAATGGTGC 1452
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1293 CACAGTGTGTGGAGCAACAAGTAGCTCCTCTGCTTCTGGTCACTTCACTTTTAATGGTGC 1352
Query 1453 CACAACTCCTCC--C-G--G--------------G--TTGTTCTTTCCTACCACTAGTTC 1491
|||||||||||| | | | | ||||||||||||||| ||||||
Sbjct 1353 CACAACTCCTCCATCAGCTGCTACAACTCCTCCCGGGTTGTTCTTTCCTACCGCTAGTTT 1412
Query 1492 TGGTCCTATGATGTTTGGAACAACTCTTGCTGCTCAAGGCACAACTCCAGCACTTCAAAC 1551
|||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1413 TGGTCCTATGATGTTTGGTACACCTCTTGCTGTTCAAGGCACAACTCCAGCACTTCAAAC 1472
Query 1552 CTATCCTGTTCAAGGTTTCATTCTTCTCCCATTCGCCGCCATGAGTCTGCAGTAA 1606
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1473 CTATCCTGTTCAAGGTTTCATTCTTCTCCCGTTCGCCGCCATGAGTTTGCAGTAA 1527
Score = 213 bits (115), Expect = 4e-54
Identities = 137/148 (93%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 211 ATCCATCACTTCAGTTCCGGTTAGTTCCGGACCATTTCAAGCTCTTGGACATGCTTCTGC 270
||||||||| ||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 81 ATCCATCACATCAGTGCCGGTTAGTTCCGGACCAGTTCAAGCTCTTGGACATGATTCTGC 140
Query 271 TGCTATTGGTTCAACCTCAACATCATCTCCAGTTCAAAGTTCTTCATCATTCAGCTTTGG 330
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 141 TGCTGTTGGTTCAACCTCAACATCATCTCCAGTTCAAAGTTCTTCACCATTCAGCTTTGG 200
Query 331 ATCCGCTCCTGCTGCCACCACATCTGTT 358
||| ||||||||| || |||||| |||
Sbjct 201 TTCCCCTCCTGCTGTCATCACATCCGTT 228
> Ahg475001 jgi|Araly1|475001|fgenesh2_kg.2__131__AT1G63540.1
Length=1638
Score = 274 bits (148), Expect = 2e-72
Identities = 244/289 (84%), Gaps = 12/289 (4%)
Strand=Plus/Plus
Query 26 TTGCCTCAGTAAGCTCCTCTTTCACT-ATCTCCGTCGTTGCTCC-GCTTCCTACTGGTTC 83
||| ||| ||||||| ||| |||| | | || |||||| | || |||||||||| | |
Sbjct 7 TTGTCTCCGTAAGCTTCTCCTTCATTCA-CTTGGTCGTT-CCCCTGCTTCCTACTTGAT- 63
Query 84 AAAGTTTGAAAGA-CAAAAGAAGAATGAGGGTTGATTTTTCTGAGCCAGAGTACAGGAAC 142
||||||||||||| |||||||||||| | ||||||||||||||||||||| ||| |||
Sbjct 64 AAAGTTTGAAAGATTGAAAGAAGAATGAAGATTGATTTTTCTGAGCCAGAGTGCAGCAAC 123
Query 143 TGTTACCATTGTCGCGATTCAGGCATACTTAATACTCAAGAATCTGAACCGAACA-AT-G 200
|||||||| ||| || || |||||||||| |||||||||||||| |||||| | | || |
Sbjct 124 TGTTACCAGTGTAGCAATCCAGGCATACTCAATACTCAAGAATCCGAACCG-AGAGATAG 182
Query 201 TGATTGGCTCATCCATCACTTCAGTTCCGGTTAGTTCCGGACCATTTCAAGCTCT-TGGA 259
||||| |||||||||||||||||| |||||||||||||||| | |||||||| | ||||
Sbjct 183 -GATTGACTCATCCATCACTTCAGTGCCGGTTAGTTCCGGACTAGTTCAAGCT-TGTGGA 240
Query 260 CATGCTTCTGCTGCTATTGGTTCAACCTCAACATCATCTCCAGTTCAAA 308
|||| |||| | |||| | |||||||||||||||||||||||||||||
Sbjct 241 CATGATTCTCCCGCTACAGTTTCAACCTCAACATCATCTCCAGTTCAAA 289
Score = 252 bits (136), Expect = 8e-66
Identities = 235/279 (84%), Gaps = 21/279 (8%)
Strand=Plus/Plus
Query 1349 AGACCCCATGAAACAGGTGCTGTTTCTTCCCCAGCATTTGGATGCACAGCCTGTGGAGCA 1408
|||||||||||||| | || ||||| |||||||| ||||||||| || |||||||||
Sbjct 1360 AGACCCCATGAAACCGCAACTATTTCTCCCCCAGCACATGGATGCACTGCATGTGGAGCA 1419
Query 1409 ACAAGTAGCTCCTCTGCTTCTGATCACTTCACCTTTAATGG----------------T-- 1450
|| ||||||||||||||||||| ||| |||||||||||||| |
Sbjct 1420 ACGAGTAGCTCCTCTGCTTCTGGTCATTTCACCTTTAATGGTACCACAACTCCTCCATCA 1479
Query 1451 GC--C-ACAACTCCTCCCGGGTTGTTCTTTCCTACCACTAGTTCTGGTCCTATGATGTTT 1507
|| | ||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct 1480 GCTGCTACAACTCCTCCCGGGTTGTTCTTTCCTACCAGTGGTTTTGGCCCTATGATGTTT 1539
Query 1508 GGAACAACTCTTGCTGCTCAAGGCACAACTCCAGCACTTCAAACCTATCCTGTTCAAGGT 1567
|| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1540 GGTACAACTCTTGCTGTTCAAGGCACAACTCCAGCACTTCAAGCCTATCCTATTCAAGGT 1599
Query 1568 TTCATTCTTCTCCCATTCGCCGCCATGAGTCTGCAGTAA 1606
| |||||||||||| ||||||||||||||||||||||||
Sbjct 1600 TACATTCTTCTCCCGTTCGCCGCCATGAGTCTGCAGTAA 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5