BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G63535.1

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924602 jgi|Araly1|924602|scaffold_200163.1                        274    1e-73


> Ahg924602 jgi|Araly1|924602|scaffold_200163.1
Length=196

 Score =  274 bits (148),  Expect = 1e-73
 Identities = 162/169 (96%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  15   TATAGGTGTGGTGATGAGTGCAAGGATGCAAGAAAGCAAAAAGGGTATATTATTGAAGCC  74
            ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct  8    TATAGGTGTGGTGATGAGTGCTAGGATGCAAGAAAGCAAAAACGGTATATTATTGAAGCC  67

Query  75   AAAGACATGCAATACCAATGCAGATTGTGCTAAGTTTTGCAAAGGTCCAATCCAGAACTG  134
             | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  68   TATGACATGCAATACCAATGCAGATTGTGCTAAGTTTTGCAAAGGTCCAATCCACAACTG  127

Query  135  CCTATATCATACTTGTGCCTGCGTGCCGGGAAATCCTCATTGTTGCTAG  183
            ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  128  CCTATATCATACTTGTGCCTGTGTACCGGGAAATCCTCATTGTTGCTAG  176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6110121760


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5