BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63540.1
Length=1997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475001 jgi|Araly1|475001|fgenesh2_kg.2__131__AT1G63540.1 1223 0.0
Ahg907056 jgi|Araly1|907056|Al_scaffold_0002_137 353 2e-96
> Ahg475001 jgi|Araly1|475001|fgenesh2_kg.2__131__AT1G63540.1
Length=1638
Score = 1223 bits (662), Expect = 0.0
Identities = 983/1125 (87%), Gaps = 73/1125 (6%)
Strand=Plus/Plus
Query 908 TGGTTCACCGTTTGGGAACAATGTTGCTTTTGCCAGACCTGATGTTGGTATCTCGCCAGT 967
||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||
Sbjct 552 TGGTTCACCGTTTGGGAACAA---TGCTTTTGCGATACCTGATGTTGGTAGCTCGCCAGT 608
Query 968 AGCTTCCTCCTCCACTAGTACTGAAATTTTTGGTGCAACTCCAGCGAGTTTGTT--TTCA 1025
|||||||||||| |||| ||| ||| ||||||||||||||||| ||| ||| || ||||
Sbjct 609 AGCTTCCTCCTCAACTACTACAGAAGTTTTTGGTGCAACTCCAACGA-TTT-TTCCTTCA 666
Query 1026 CCTTTTGGGCCAATGCAAGCTCCTGTCCAAGCTAGTGCATCTAGCACTTCCACATTCCCC 1085
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 667 CCTTTTGGGCCAAAGCAAGCTCCTGTCCAAGCTAGTGCATCTAGCACTTTCACA-TCCCC 725
Query 1086 CC-ATTTGGTTGCGTCCCACCATCTCCGTCGAGTGGTTCTTCGCTGTTCAACTCTGCTTT 1144
|| |||||||||| |||| |||||||| ||| |||| |||||||||||||||||| ||
Sbjct 726 CCTATTTGGTTGCACCCCAGCATCTCCGACGACTGGTACTTCGCTGTTCAACTCTG--TT 783
Query 1145 TGGTTCCCTGCCAGCACCCTCTTCTTCCAACTTTTTCGGACAATCCTCTTCCAACCTTCT 1204
| || | | | || | ||| | | | |||||||||| ||||| |
Sbjct 784 T--TT-CGT-TC--CA-------C-GCCAGC---AT----C-ATCCTCTTCCGACCTTTT 821
Query 1205 CGGACAAAACCCATCGACTACTGGTGTTGGTTACC-TGCCTGGATCTCCATTGAACAGTT 1263
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 822 CGGACAAAACCCATCGACTACTGGTGTTGGTT-CCTTGCCTGGATCTCCATTGAACAGTT 880
Query 1264 CTTTTCCCGGATTTGGTGTTGGTTACCTGCCTGGATCTTCCTCCAACCTATTTAGATCAA 1323
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GTATTCCTGGATTTGGTGTTGGTTACCTGCCTGGATCTTCCTCCAACCTATTTAGATCAA 940
Query 1324 ACCCACCAAATTTTGGTGGTGGTTCAATCGGTGCAGGTCCTCAACATTTCGGTTTCAATG 1383
|||||||||||||||||||||||||| |||||||||||||||||| ||| ||| | ||||
Sbjct 941 ACCCACCAAATTTTGGTGGTGGTTCAGTCGGTGCAGGTCCTCAACGTTTTGGTCTGAATG 1000
Query 1384 GAGATGCTTCTGTGTTGCCGAGCA-CGCCTTTTTCA-CTGTCCCCTGCATTTAGCAGCAA 1441
||| | || ||| || || || | ||||||||||| | |||||||||||||||| |||
Sbjct 1001 GAGCTACTA-TGT-TT-CCAAG-ATCGCCTTTTTCATCA-TCCCCTGCATTTAGCAACAA 1055
Query 1442 TACCAATACTGGATCCTATCCTTTTGCATCTCATGAATGGAGTCGCCCCACTGAACAAGG 1501
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TCCCAACACTGGATCCTATCCTTTTGCATCTCATGAATGGAGTCGCCCCACTGAACAAGG 1115
Query 1502 TAGTATGAATCCTGGTTATGCGCCAACACATGAAGGGGATAACTCATCTGGTTGGAGTTT 1561
||||| |||||||||||||||||| |||||||| || || ||| ||||||||||||||||
Sbjct 1116 TAGTAGGAATCCTGGTTATGCGCCTACACATGACGGAGAAAACACATCTGGTTGGAGTTT 1175
Query 1562 CCCCACT-A----GCAAA-GGC-AACATTTATATTTCCATATCTGCTTCCAAACCTTATC 1614
||||||| | | ||| ||| || || |||||||||||||||||||||||||||||||
Sbjct 1176 CCCCACTGAAAAAGGAAAAGGCGAA-ATCTATATTTCCATATCTGCTTCCAAACCTTATC 1234
Query 1615 TACACAAAAGCCATGAAGAACTAAGGTGGGAAGATTACAAGCAAGGAGACAAAGGTGGGC 1674
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1235 TACATAAAAGCCATGAAGAACTAAGGTGGGAAGATTACAAGCAAGGAGTCAAAGGTGGGT 1294
Query 1675 CGTTTCCTGCTGCTCCTGCTTCTACCATAGGCTCAAGGCCAAACGCTGCTTTTTCACCA- 1733
||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct 1295 CGTTTCCTGCTGCTCCTGCATCTCCCATAGGCTCAAGGCCAAACTTTGCTTTTCCACCAT 1354
Query 1734 --------CC--A--A--CTG----T-TT-CTCCCCCAGCACATGGATGCACTGCATGTG 1773
|| | | | | | || ||||||||||||||||||||||||||||||
Sbjct 1355 TAAATAGACCCCATGAAACCGCAACTATTTCTCCCCCAGCACATGGATGCACTGCATGTG 1414
Query 1774 GAGCAACCAGTAGCTCATCTGCTTCCCGTCACTTCACCTTTAATGGTGCCACAAGTCCTC 1833
||||||| |||||||| |||||||| |||| ||||||||||||||| |||||| |||||
Sbjct 1415 GAGCAACGAGTAGCTCCTCTGCTTCTGGTCATTTCACCTTTAATGGTACCACAACTCCTC 1474
Query 1834 CATCAGCTGCTACAACTCCTCCCGGGTTGTTCTTTCCTAGCACTGGTTTTG-CTCCTATG 1892
||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||
Sbjct 1475 CATCAGCTGCTACAACTCCTCCCGGGTTGTTCTTTCCTACCAGTGGTTTTGGC-CCTATG 1533
Query 1893 ATGTTTGGTACAAATCTTGCTGTTCAAGGCACAAGTCCAGCACTTCAAGCCTATCCTGTT 1952
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1534 ATGTTTGGTACAACTCTTGCTGTTCAAGGCACAACTCCAGCACTTCAAGCCTATCCTATT 1593
Query 1953 CAAGGTTACATTCTTCTCCCGTTCGCCGCCATGACTCTGCAGTAA 1997
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1594 CAAGGTTACATTCTTCTCCCGTTCGCCGCCATGAGTCTGCAGTAA 1638
Score = 440 bits (238), Expect = 2e-122
Identities = 351/403 (87%), Gaps = 17/403 (4%)
Strand=Plus/Plus
Query 2 TTGTTGTTGTCTCCGTAAGCTTCTCCTTCAATCACTTGGTCGGTGCCCTGCTTCCTACTT 61
|||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
Sbjct 1 TTGTTGTTGTCTCCGTAAGCTTCTCCTTCATTCACTTGGTCGTTCCCCTGCTTCCTAC-T 59
Query 62 TGATAAAGTTTGAAAGATCAAAAGAAGAATGAAGATTGATTTTTCTGAGCCAGAGTGCAG 121
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGATAAAGTTTGAAAGATTGAAAGAAGAATGAAGATTGATTTTTCTGAGCCAGAGTGCAG 119
Query 122 TAACTGTTACCAGTTTACCAATCCAGACCTACTTAATACTCCAGAATCCGAACAGAGCA- 180
||||||||||||| || |||||||| | |||| ||||||| ||||||||||| ||| |
Sbjct 120 CAACTGTTACCAGTGTAGCAATCCAGGCATACTCAATACTCAAGAATCCGAACCGAG-AG 178
Query 181 AT-GTGATTGGCTCATCCATCACTTCAGTGCCGGTTAATGATGGACCAGTTCCACCTCT- 238
|| | ||||| |||||||||||||||||||||||||| | |||| ||||| | || |
Sbjct 179 ATAG-GATTGACTCATCCATCACTTCAGTGCCGGTTAGTTCCGGACTAGTTCAAGCT-TG 236
Query 239 TGAACTTGATTCTGCTGCTGTTGTTTCAACTTCAACATCATCTCCAGTTCAA------GC 292
|| || ||||||| | ||| |||||||| ||||||||||||||||||||| ||
Sbjct 237 TGGACATGATTCTCCCGCTACAGTTTCAACCTCAACATCATCTCCAGTTCAAATCCAAGC 296
Query 293 TCTTGGACATGATTCTGGTGCTACAGTTTCTACCTCAACATCATCTCCAGTTCAAATTTT 352
||||||||||||||||| |||||| ||||| |||||||||||||||||| |||||| ||
Sbjct 297 TCTTGGACATGATTCTGCTGCTACGGTTTCAACCTCAACATCATCTCCA-TTCAAAGTT- 354
Query 353 TTCTTCACCATTCAGCTTCGGATCCGCTCATGCTGCCATCACA 395
||||||||||||||||||||||| ||| |||||||||||||
Sbjct 355 --CTTCACCATTCAGCTTCGGATCCACTCCTGCTGCCATCACA 395
Score = 130 bits (70), Expect = 4e-29
Identities = 97/110 (88%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 515 TTCTTCACCATTCAGTTTCGGATCCGCTCCTGCTGCCATCACATCCGTTAGTTCTGGTCC 574
|||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 399 TTCTTCGCTATTCAGCTTCGGATCCACTCCTGCTGCCATCACATCCGTTAGTTCTGGACC 458
Query 575 AGCGCAATCTCCTGCCTCATCACCTAGATTATGGATC-GATAGATTTGCT 623
||||||||||||||||||| |||||| ||| || || | || |||||||
Sbjct 459 AGCGCAATCTCCTGCCTCAACACCTAAATTCGGGTTCAG-TACATTTGCT 507
> Ahg907056 jgi|Araly1|907056|Al_scaffold_0002_137
Length=1527
Score = 353 bits (191), Expect = 2e-96
Identities = 237/260 (91%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 1738 CTGTTTCTCCCCCAGCACATGGATGCACTGCATGTGGAGCAACCAGTAGCTCATCTGCTT 1797
|||||||| |||||||| ||||||||| | ||||||||||| |||||||| |||||||
Sbjct 1268 CTGTTTCTTCCCCAGCATTTGGATGCACAGTGTGTGGAGCAACAAGTAGCTCCTCTGCTT 1327
Query 1798 CCCGTCACTTCACCTTTAATGGTGCCACAAGTCCTCCATCAGCTGCTACAACTCCTCCCG 1857
| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1328 CTGGTCACTTCACTTTTAATGGTGCCACAACTCCTCCATCAGCTGCTACAACTCCTCCCG 1387
Query 1858 GGTTGTTCTTTCCTAGCACTGGTTTTGCTCCTATGATGTTTGGTACAAATCTTGCTGTTC 1917
||||||||||||||| | || |||||| ||||||||||||||||||| |||||||||||
Sbjct 1388 GGTTGTTCTTTCCTACCGCTAGTTTTGGTCCTATGATGTTTGGTACACCTCTTGCTGTTC 1447
Query 1918 AAGGCACAAGTCCAGCACTTCAAGCCTATCCTGTTCAAGGTTACATTCTTCTCCCGTTCG 1977
||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1448 AAGGCACAACTCCAGCACTTCAAACCTATCCTGTTCAAGGTTTCATTCTTCTCCCGTTCG 1507
Query 1978 CCGCCATGACTCTGCAGTAA 1997
||||||||| | ||||||||
Sbjct 1508 CCGCCATGAGTTTGCAGTAA 1527
Score = 150 bits (81), Expect = 3e-35
Identities = 117/134 (87%), Gaps = 3/134 (2%)
Strand=Plus/Plus
Query 282 CCAGTTCAAGCTCTTGGACATGATTCTGGTGCTACAGTTTCTACCTCAACATCATCTCCA 341
|||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||
Sbjct 112 CCAGTTCAAGCTCTTGGACATGATTCTGCTGCTGTTGGTTCAACCTCAACATCATCTCCA 171
Query 342 GTTCAAATTTTTTCTTCACCATTCAGCTTCGGATCCGCTCATGCTGCCATCACACCCGTT 401
||||||| || |||||||||||||||| || ||| ||| ||||| ||||||| |||||
Sbjct 172 GTTCAAAGTT---CTTCACCATTCAGCTTTGGTTCCCCTCCTGCTGTCATCACATCCGTT 228
Query 402 AGTTCGGGACCAGC 415
||||| ||||||||
Sbjct 229 AGTTCCGGACCAGC 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75075872895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5