BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63550.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474999 jgi|Araly1|474999|fgenesh2_kg.2__129__AT1G63550.1 1192 0.0
Ahg474997 jgi|Araly1|474997|fgenesh2_kg.2__127__AT1G63570.1 601 5e-171
> Ahg474999 jgi|Araly1|474999|fgenesh2_kg.2__129__AT1G63550.1
Length=1366
Score = 1192 bits (645), Expect = 0.0
Identities = 808/884 (91%), Gaps = 21/884 (2%)
Strand=Plus/Plus
Query 476 CCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCACAGCATCTTGCGT 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCACAGCATCTTGCGC 488
Query 536 AGACTGTGTCCAAACCGCAACAACCGAGATCGCCT-CAAATTGTACTCTTAACAAAAGAG 594
||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 489 AGATTGTGTCCAAACCGCAACAACTGAGATCG-CTACAAATTGTACTCTTAACAAAAGAG 547
Query 595 CCGTCATATACTACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTCCTCTGAAT 654
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 548 CGGTCATATACTACGAGGAGTGTATGGTTCGATACTCAAATGTTTCTTTCTCCTCTGAAT 607
Query 655 TGGAAATCGTACCAAGCATCACTATTTACTCTCTTCGCTCTGCTCCAAACCCGACTCGGT 714
||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 608 TGGAATTCACACCAAGCATCACTATATACTCTCTTCGCTCTGCTCCAAACCCGACTCGGT 667
Query 715 TCAATCAAACACTTACTGAAAAATTCAGCGAATTGATATTCAACGTATCTTCGTCCTCTT 774
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 668 TCAATCAAACACTTACTGAAAAATTCAGCGAACTGATATTCAACATATCTTCGTCCTCTT 727
Query 775 TGGTTCCATATTTCGTGGAGGATCAAGAACGTGTGACACAATCAGAGGGTTCTTATGATT 834
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 728 TGATTCCATATTTCGTGGAGGATCAAGAACGTGTGACACAATCAGAAGGTTCTTATGATT 787
Query 835 TAGACACAATGGTTCAGTGTAGTCCTGATCTTGATATATTCAACTGCACCGTTTGTCTTC 894
|||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 788 TAGAGTCAATGGTTCAATGTAGTCCTGATCTTGATATTTTCAACTGTACCGTTTGTCTTA 847
Query 895 GAGTTGCGTTCTTTAGAATTTCAACTTGTTGCGGTTTGCCAAGTTACGCCAAGATCTTTA 954
| ||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 848 GGGTTGCCTTCTTAAGAATTTCAACTTGTTGCGGTTTGCCAAGTTACGCTAAAATCTTTA 907
Query 955 CTCCTAAATGTCTTTTGAGGTTTCAAACCTCTGTTTTGTTATCTCCACCGCCATCTCCAT 1014
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 908 CTCCTAAATGTCTTTTGAGGTTTCAAACCTCTGTTTTGTCATCTCCACCGTCATCTCCAT 967
Query 1015 CGGCTCCGCCTCCTCGATCTCCACCGCCTAAATCATCGCCACCTTCTTCTTTACCACAGA 1074
|| ||||||||||||| ||||||| |||| |||||||||| ||| ||||||||||| |||
Sbjct 968 CGCCTCCGCCTCCTCGGTCTCCACTGCCTCAATCATCGCCGCCTCCTTCTTTACCAAAGA 1027
Query 1075 CGCCATCGCCGCCGCTGGTTTTCACGCCGCCACAGAACGTTCCAAATCCTAGCGGATCGT 1134
||||| |||| |||||||||||||||||||||| |||| ||||| | ||||||| ||||
Sbjct 1028 CGCCACCGCCCCCGCTGGTTTTCACGCCGCCACGGAACTTTCCACCTGCTAGCGGGTCGT 1087
Query 1135 TTTCCTTTAACGTTCTTAAAGGAAATGTAATATTTGGGAGAATTGTTGTTACAATGACAG 1194
|||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||||||||
Sbjct 1088 TTTCCTTTAACGTTCTAAAAGGAAATGAAATTTTTGGGAGACTTGTTGTCACAATGACAG 1147
Query 1195 CTTTGGTGTTTGCACTTGTGGATCTT-TGATC-A-TAT--T----TCATGGATCATAAAT 1245
||||| ||||||||||||||||| || ||||| | | | | |||||||| ||||||
Sbjct 1148 CTTTGATGTTTGCACTTGTGGAT-TTGTGATCTAATTTCATGAACTCATGGATTATAAAT 1206
Query 1246 ATTGATGATTCGTAATAATTTG-TATTCCTTCAATTTGTGTGATGTGT-ACGTTC-TCAC 1302
|||||||||| ||||||||||| | ||| |||||| |||||||||||| |||||| | |
Sbjct 1207 ATTGATGATTTGTAATAATTTGCTTTTC-TTCAATCTGTGTGATGTGTTACGTTCAT-A- 1263
Query 1303 AGGATCCAAGATCACTAAAA-ATGTTAATATGGTTCCTaaaaaa 1345
|| |||||| ||||| |||| |||||||||||||||||| ||||
Sbjct 1264 AG-ATCCAATATCAC-AAAAGATGTTAATATGGTTCCTACAAAA 1305
Score = 593 bits (321), Expect = 9e-169
Identities = 400/436 (92%), Gaps = 14/436 (3%)
Strand=Plus/Plus
Query 1 AGGACTAAGTCTCTGTTTTGATTAAGAAACACAAAAACCAAATTGTGTCAACTTTATGAT 60
|||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 1 AGGACTAAGTCTATGTTTTGCTTAAGAAACACAAAAA-C-AATTGTGTCAACTTTATGAT 58
Query 61 TTTGTCTTGGTAAAG--ATATAGCTATCATGGATGAAAACAATATAAGTCTTACATATTC 118
||||||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 59 TTTGTCTAAGTAAAGATATATAGCTATCATGGATGAAAACTATATTAGTTTTACATATTC 118
Query 119 TTTCTTCGAATTGGTAATACCATCGTTA-TTCCGACATCATTTTGAATAAATCAACaaaa 177
|| |||||||||||| |||||||| ||| || |||||||| ||||||||||||||||||
Sbjct 119 TTCCTTCGAATTGGT-ATACCATCATTAGTT-GGACATCATATTGAATAAATCAACAAAA 176
Query 178 agaaaaaaaG-T-T-TTCTTTCTACTATAAATTCCTATCTCCTCTGTTTTGTCaaaaaaa 234
|||||| ||| | | |||||||||||| |||||||||||||||||||||||| |||
Sbjct 177 AGAAAAGAAGTTATCTTCTTTCTACTAAAAATTCCTATCTCCTCTGTTTTGT----TAAA 232
Query 235 aaaCAAAGAACAAAATGGCAAGAATCATAATTACCCTCACTATCCCTCTGTTTTACTTCT 294
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 233 CAACAAAGAACAAAATGGCAAGAATCATAATTACCCTCACTATTCCACTGTTTTACTTCT 292
Query 295 TTTTCTTCTCTTTGTTATCTCACCAAACCATGTCTCAACCTGACCACATATTTACTGTCT 354
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 293 TCTTCTTCTCTTTGTTATCTCACCAAACCATGTCTCAACCTGACCACATGTTTACTTTCT 352
Query 355 GCAATCCTACCAACAACTTTACACAAACCAGTTCATACGAAACCAACCGCGACACCCTAC 414
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 353 GCAATCCTAACAACAACTTTACACAAACCAGTTCATACGAAACAAACCGCGACACCCTAC 412
Query 415 TCGCCTCTCTCCGCGA 430
||||||||||||||||
Sbjct 413 TCGCCTCTCTCCGCGA 428
> Ahg474997 jgi|Araly1|474997|fgenesh2_kg.2__127__AT1G63570.1
Length=790
Score = 601 bits (325), Expect = 5e-171
Identities = 603/732 (82%), Gaps = 40/732 (5%)
Strand=Plus/Plus
Query 325 TGTCTCAACCTGACCACATATTTACTGTCTGCAATCCTACCAACAACTTTACACAAACCA 384
|||| |||||| | ||||| ||| ||||||||||| || ||||||| ||||||||||
Sbjct 2 TGTCCCAACCTCAACACATGCACACTTTCTGCAATCCTTCCGACAACTTCACACAAACCA 61
Query 385 GTTCATACGAAACCAACCGCGACACCCTACTCGCCTCTCTCCGCGAGTCTTCCTCTCTCG 444
||||||||||||| |||||| ||| ||||||| || ||||| || ||||||| ||||||
Sbjct 62 GTTCATACGAAACAAACCGCAACATCCTACTCACCGCTCTCAGCTTGTCTTCCCCTCTCG 121
Query 445 GACACTATTCAAACGCCACAGA-AGGTCTTAGCCCTGACACAGTCCATGGAATGTTCCTC 503
|||||||| ||| |||||| | ||||||||||| ||||||||| |||| |||||||||
Sbjct 122 TACACTATTTAAATGCCACA-ATCGGTCTTAGCCCCGACACAGTCTATGGCATGTTCCTC 180
Query 504 TGTAGAGGAGACATCACCACAGCATCTTGCGT-AGACTGTGTCCAAACCGCAACAACCGA 562
|||||||||||||||| |||| || ||||| | |||||||||||||||||||||| |||
Sbjct 181 TGTAGAGGAGACATCAACACAACAACTTGC-TCCGACTGTGTCCAAACCGCAACAATCGA 239
Query 563 GATCGCCT-CAAATTGTACTCTTAACAAAAGAGCCG-TCATATACTACGACGAGTGTATG 620
||||| || |||| ||||||||||||||||||| || ||||||||||| | |||||||||
Sbjct 240 GATCG-CTACAAACTGTACTCTTAACAAAAGAG-CGTTCATATACTACCAAGAGTGTATG 297
Query 621 GTTCGATACTCAAATGTTTCCTTCTCCTCTGAATTGGAAATCGT--ACCAAG-CATCACT 677
||||||||||||||||||| ||||| ||| ||||| |||| || ||| || |||| |
Sbjct 298 GTTCGATACTCAAATGTTTACTTCTTCTCCGAATTTGAAA--GTAAACC-AGTCATCGTT 354
Query 678 ATTTACTCTCTTCGCTCTGCTCCAAAC-CCGACTCGGTTCAATCAAACACTTACT-GAA- 734
||||||||||||| |||||||||||| | || ||||| || ||||| | || | ||
Sbjct 355 CTTTACTCTCTTCGTTCTGCTCCAAACTCAAAC-CGGTTTAACCAAAC-CCTA-TCCAAT 411
Query 735 AAATTCAG-CGAATTGATATTC-AACGTATCTTCGTCCTCTTTGGTTCCATATTTCGTGG 792
||||| | | || |||| | | ||||| |||||||| ||||| |||||||||||||||
Sbjct 412 AAATT-GGACCAACTGAT-TCCTAACGTCTCTTCGTCAACTTTGATTCCATATTTCGTGG 469
Query 793 AGGATCAAGAACGTGTGACACAATCAGAGGGTTCTTATGATTTAGACACAATGGTTCAGT 852
||||||||||||||||||| || | ||||||||| |||||||||| ||||| ||||||
Sbjct 470 AGGATCAAGAACGTGTGACTCAGTTAGAGGGTTCATATGATTTAGTGTCAATGATTCAGT 529
Query 853 GTAGTCCTGATCTTGATATATTCAA-CTGCACCGTTTGTCTTC-GAGTTGCGT-T-CTTT 908
||||||||||||||||| || ||| ||| ||| |||| || | || |||||| | |
Sbjct 530 GTAGTCCTGATCTTGATCCAT-CAAACTGTACCATTTGCCT-CAGATTTGCGTATGCAAC 587
Query 909 AGAATTTCAACTTGTTGCGGTTTGCCAAGTTACG-C-CAAGATCTTT-ACTCCTAAATGT 965
|| ||||||||||||||||| | ||||||| || | | || ||| ||||||||||||
Sbjct 588 AG--TTTCAACTTGTTGCGGTATACCAAGTT-CGGCTCTT-AT-TTTCACTCCTAAATGT 642
Query 966 CTTTTGAGGTTTCA-AACCTCTGTTTTGTTATCTCCACCGCCATCTCCATCGGCTCCGCC 1024
||||||||| | | ||||| ||||||| ||| ||| |||| ||||||||| ||| |||
Sbjct 643 ATTTTGAGGTAT-AGAACCTTTGTTTTGCCATCACCAGCGCCGTCTCCATCGTCTCTGCC 701
Query 1025 TCCTCGATCTCC 1036
||||| ||||||
Sbjct 702 TCCTCTATCTCC 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5