BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63560.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338015 jgi|Araly1|338015|fgenesh1_pg.C_scaffold_2000114 1040 0.0
Ahg474997 jgi|Araly1|474997|fgenesh2_kg.2__127__AT1G63570.1 198 7e-50
> Ahg338015 jgi|Araly1|338015|fgenesh1_pg.C_scaffold_2000114
Length=762
Score = 1040 bits (563), Expect = 0.0
Identities = 657/701 (94%), Gaps = 12/701 (2%)
Strand=Plus/Plus
Query 68 ATGTCCCAACCTCAACACATGGC-CACTTTCTGCGACGA-CAGATTATCCGACAACTTCA 125
|||||||||||||| ||||| || ||||||||||||||| || |||||||||||||||||
Sbjct 1 ATGTCCCAACCTCACCACAT-GCACACTTTCTGCGACGACCA-ATTATCCGACAACTTCA 58
Query 126 CACAAACCAGCTCATACAAAGCAAACCGTGAAACCCTACTTTCTTCTCTCCGTGACCGTT 185
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 59 CACAAACCAGCTCATACAAATCAAACCGTGAAACCCTACTTTCTTCTCTCCGTGACCATT 118
Query 186 CCTCCCTTGGAACCTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATGGCA 245
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCTCCCTCGGAACCTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATGGCA 178
Query 246 TGTTTCTCTGCCGAGGAGACCTCACCAAAACATCATGTTCGGACTGTGTCAAAACCGCAA 305
|||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 179 TGTTCCTCTGCCGAGGAGACCTCCCCAAAACATCTTGTTCGGACTGTGTCAAGACCGCAA 238
Query 306 CCCTAGAAATCACTAAAAATAATAACTGCACTTCCAGAAAAACTGCTCTAATATTCTACG 365
|| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 239 CCGTAGAAATCACTAAAAATAA---CTGCACTTCCAGAAAAACTGCTCTAATATACTACG 295
Query 366 AGGAGTGTATGGTTCGATACTCCAATGTTTCCTTCTTCACGCTCGTAGAACTAGACGGGC 425
|||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 296 AGGAGTGTATGGTTCGTTACTCCAATGTGTCCTTCTTCACGCTCGTAGAA---GACGGGC 352
Query 426 CTTACGTCGCTAAATACTCTCTCGCCACTTTTCCTACTTCTCTTTTTAGTTCTTTCCAAC 485
|||||| ||||| ||||||| |||| | |||||||||||| |||||||||| |||||||
Sbjct 353 CTTACGCCGCTAGATACTCTGTCGCTTCGTTTCCTACTTCTATTTTTAGTTCGTTCCAAC 412
Query 486 AAACGTTATCCAATAAGGTAGAGCAACTAATTATCCTCATAGCATCAAAGTCTTCTTTGT 545
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 413 AAACGTTATCCAATAAGGTAGAGCAACTAATTATCCTCATAGGATCAAAGTCTTCTTTGT 472
Query 546 CTGCTTCTACGCCTTATTACGTGAAGGATATATCACGTGTAAATGAATTAGAGGGCTCGT 605
||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct 473 CTGCTTCTACGCCTTATTACGAGAAGGATATATCACGTGTGAATGCATTAGAGGGCTCGT 532
Query 606 ATACATTAGACACGGTGGTTCAGTGTAGTCCTGATCTTGATCCAGCAAATTGCGGCGTCT 665
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 533 ATACATTAGACACAGTGGTTCAGTGTAGTCCTGATCTTGATTCAGCAAATTGCGGCGTCT 592
Query 666 GTTTGAGACTTGTGGTCAA-AGGTCTCTCAGGCTGTTGTACCAATGCTCGTTTTGCTCAG 724
||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 593 GTTTGAGACTTGTGGTCAATAG-TCTCTCAGGCTGTTGTACCAATGCTCGTTGGGGTCAG 651
Query 725 TTCTATCTTTCTAAATGTTTTTTGAAGTATGACACAACCGG 765
||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 652 TTCAATCTTCCTAAATGTCTTTTGAAGTATGACACAACCGG 692
Score = 100 bits (54), Expect = 2e-20
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1046 GGAAACGAAATATTGAGGAGAATTTTCATCACAGCAATGACAACTTCGGTGTTAGCACTT 1105
||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 691 GGAAACGAAATGTTTAGGAGAATTTTCATTACAGCCTTGACAACTTCGGTGTTAGCACTT 750
Query 1106 GTGGGTCTGTGA 1117
|||||||| |||
Sbjct 751 GTGGGTCTATGA 762
> Ahg474997 jgi|Araly1|474997|fgenesh2_kg.2__127__AT1G63570.1
Length=790
Score = 198 bits (107), Expect = 7e-50
Identities = 271/345 (79%), Gaps = 32/345 (9%)
Strand=Plus/Plus
Query 69 TGTCCCAACCTCAACACATGGC-CACTTTCTGCGACGACAGATTATCCGACAACTTCACA 127
||||||||||||||||||| || |||||||| | | | | | |||||||||||||||
Sbjct 2 TGTCCCAACCTCAACACAT-GCACACTTTCT--G-C-A-ATCCT-TCCGACAACTTCACA 54
Query 128 CAAACCAGCTCATAC-AAAGCAAACCGTGAA-ACCCTACTTTCTTCTCTC--CGTGACCG 183
|||||||| |||||| ||| ||||||| || | |||||| | ||||| | || |
Sbjct 55 CAAACCAGTTCATACGAAA-CAAACCG-CAACATCCTACTCACCGCTCTCAGCTTG-TC- 110
Query 184 TTCCTCCCT-TGGAAC-CTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTAT 241
|| | |||| | | || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 111 TT-C-CCCTCTCGTACACTATTTAAATGCCACAATCGGTCTTAGCCCCGACACAGTCTAT 168
Query 242 GGCATGTTTCTCTGCCGAGGAGACCTCACCAAAACATCATGTTCGGACTGTGTCAAAACC 301
|||||||| ||||| |||||||| ||| || |||| | || || ||||||||| |||||
Sbjct 169 GGCATGTTCCTCTGTAGAGGAGACATCAACACAACAACTTGCTCCGACTGTGTCCAAACC 228
Query 302 GCAACCCTAGAAATCACTAAAAA-TAATAACTGCACTTCCAGAAAA-A-CTGCTCTAATA 358
||||| | || ||| ||| ||| | || || | || | |||| | | | || | ||
Sbjct 229 GCAACAATCGAGATCGCTACAAACTG-TA-CT-C--TTA-ACAAAAGAGC-GTTC-A-TA 279
Query 359 TTCTACGAGGAGTGTATGGTTCGATACTCCAATGTTTCCTTCTTC 403
| |||| | |||||||||||||||||||| ||||||| |||||||
Sbjct 280 TACTACCAAGAGTGTATGGTTCGATACTCAAATGTTTACTTCTTC 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5