BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63570.1 Length=855 Score E Sequences producing significant alignments: (Bits) Value Ahg474997 jgi|Araly1|474997|fgenesh2_kg.2__127__AT1G63570.1 1205 0.0 Ahg474999 jgi|Araly1|474999|fgenesh2_kg.2__129__AT1G63550.1 457 7e-128 Ahg338015 jgi|Araly1|338015|fgenesh1_pg.C_scaffold_2000114 217 1e-55 > Ahg474997 jgi|Araly1|474997|fgenesh2_kg.2__127__AT1G63570.1 Length=790 Score = 1205 bits (652), Expect = 0.0 Identities = 745/790 (94%), Gaps = 5/790 (1%) Strand=Plus/Plus Query 68 TGTCCCAACCTCAACACATGCACACTTTCTGC-A-GCGT-CGACAGCTTCACACAAACCA 124 |||||||||||||||||||||||||||||||| | | | ||||| |||||||||||||| Sbjct 2 TGTCCCAACCTCAACACATGCACACTTTCTGCAATCCTTCCGACAACTTCACACAAACCA 61 Query 125 GCTCCTACGAAACAAACCGCAACATCCTACTCACCACTCTCAGCTTGACTTCCTCGCTCG 184 | || |||||||||||||||||||||||||||||| ||||||||||| ||||| | |||| Sbjct 62 GTTCATACGAAACAAACCGCAACATCCTACTCACCGCTCTCAGCTTGTCTTCCCCTCTCG 121 Query 185 TACACTATTTAAACGCCACAATCGGTCTCAGCCCCGACACAGTCTATGGCATGTTCCTCT 244 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 122 TACACTATTTAAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATGGCATGTTCCTCT 181 Query 245 GTAGAGGAGACATCAACACAACATCTTGCTCAGACTGTGTTCAAACCGCAGCAATCGAGA 304 ||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||| Sbjct 182 GTAGAGGAGACATCAACACAACAACTTGCTCCGACTGTGTCCAAACCGCAACAATCGAGA 241 Query 305 TCGCTACAAACTGTACTCTTAACAAAAGAGCTTTCATATACTACGACGAGTGTATGGTTC 364 ||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 242 TCGCTACAAACTGTACTCTTAACAAAAGAGCGTTCATATACTACCAAGAGTGTATGGTTC 301 Query 365 GATACTCAAATGTTTCCTTCTTCTCTGAATTTGAAAGTAAACCAGTCATCGTTCGTTACT 424 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 302 GATACTCAAATGTTTACTTCTTCTCCGAATTTGAAAGTAAACCAGTCATCGTTCTTTACT 361 Query 425 CTCTTCGTTCTGCTCCAAACTCAAACCGGTTTAACCAAACCCTATCCAATAAATTAGACC 484 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 362 CTCTTCGTTCTGCTCCAAACTCAAACCGGTTTAACCAAACCCTATCCAATAAATTGGACC 421 Query 485 AACTGATTCCTAACGTCTCTCCGTCAACTTTGATACCGTATTTTGTGGAGGATCAAGAAC 544 |||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||| Sbjct 422 AACTGATTCCTAACGTCTCTTCGTCAACTTTGATTCCATATTTCGTGGAGGATCAAGAAC 481 Query 545 GTGTGACTCAGTTAGAGGGTTCATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATC 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 GTGTGACTCAGTTAGAGGGTTCATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATC 541 Query 605 TTGATCCATCAAACTGTACCATTTGCCTCAGATTTGCGTATGCAACAGTTTCAACTTGTT 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TTGATCCATCAAACTGTACCATTTGCCTCAGATTTGCGTATGCAACAGTTTCAACTTGTT 601 Query 665 GCGGTGTACCAAGTTCGGCTCTGATTTTTACTCCTAAATGTATTTTGAGATATAGAACCT 724 ||||| |||||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct 602 GCGGTATACCAAGTTCGGCTCTTATTTTCACTCCTAAATGTATTTTGAGGTATAGAACCT 661 Query 725 TTGTTTTGCCATCACCAGCGCCGTCTCCATCGTCTCTGCCTCCTATATCTCCGACATCTT 784 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 662 TTGTTTTGCCATCACCAGCGCCGTCTCCATCGTCTCTGCCTCCTCTATCTCCGTTGTCTC 721 Query 785 CGCCTCCTCTGTCTCTGCCGCCTCAATTGCCGCCTCCTCTT-TCGCAACCACCGCCCCCG 843 ||||||||||||||||||||||||||| ||||||||||||| | |||||| || || ||| Sbjct 722 CGCCTCCTCTGTCTCTGCCGCCTCAATCGCCGCCTCCTCTTAT-GCAACCGCCTCCGCCG 780 Query 844 CTGAGCACTT 853 |||| ||||| Sbjct 781 CTGAACACTT 790 > Ahg474999 jgi|Araly1|474999|fgenesh2_kg.2__129__AT1G63550.1 Length=1366 Score = 457 bits (247), Expect = 7e-128 Identities = 464/566 (82%), Gaps = 26/566 (5%) Strand=Plus/Plus Query 216 CCCCGACACAGTCTATGGCATGTTCCTCTGTAGAGGAGACATCAACACAACATCTTGCTC 275 ||| ||||||||| |||| ||||||||||||||||||||||||| |||| |||||||| | Sbjct 429 CCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCACAGCATCTTGCGC 488 Query 276 AGACTGTGTTCAAACCGCAGCAATC-GAGATCGCTACAAACTGTACTCTTAACAAAAGAG 334 ||| ||||| ||||||||| ||| | |||||||||||||| ||||||||||||||||||| Sbjct 489 AGATTGTGTCCAAACCGCAACAA-CTGAGATCGCTACAAATTGTACTCTTAACAAAAGAG 547 Query 335 CTTTCATATACTACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTTCTCTGAAT 394 | ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| Sbjct 548 CGGTCATATACTACGAGGAGTGTATGGTTCGATACTCAAATGTTTCTTTCTCCTCTGAAT 607 Query 395 TTGAAAGTAA-ACCA-GTCATCGTTCGT-TACTCTCTTCGTTCTGCTCCAAACTCAAAC- 450 | ||| | | |||| | |||| | | ||||||||||| |||||||||||| | | | Sbjct 608 TGGAAT-TCACACCAAG-CATCACTA-TATACTCTCTTCGCTCTGCTCCAAACCCGA-CT 663 Query 451 CGGTTTAACCAAACCCT-A-TCCAATAAATT-AGACCAACTGAT-TCCTAACGTCTCTCC 506 ||||| || ||||| || | | || ||||| || | ||||||| | | ||| | ||| | Sbjct 664 CGGTTCAATCAAACACTTACTG-AA-AAATTCAG-CGAACTGATATTC-AACATATCTTC 719 Query 507 GTCAACTTTGATACCGTATTTTGTGGAGGATCAAGAACGTGTGACTCAGTTAGAGGGTTC 566 ||| ||||||| || ||||| ||||||||||||||||||||||| || | ||| ||||| Sbjct 720 GTCCTCTTTGATTCCATATTTCGTGGAGGATCAAGAACGTGTGACACAATCAGAAGGTTC 779 Query 567 ATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATCTTGATCCAT-CAAACTGTACCA 625 |||||||||| ||||||| |||| |||||||||||||||||| | ||| ||||||| Sbjct 780 TTATGATTTAGAGTCAATGGTTCAATGTAGTCCTGATCTTGATATTTTCAA-CTGTACCG 838 Query 626 TTTGCCTCAGATTTGCGTA-TGCAACAGTTTCAACTTGTTGCGGTGTACCAAGTT-CGGC 683 |||| || || |||| | | || | ||||||||||||||||| | ||||||| || | Sbjct 839 TTTGTCTTAGGGTTGCCTTCTT-AAGAATTTCAACTTGTTGCGGTTTGCCAAGTTACG-C 896 Query 684 TCTGATTTTTACTCCTAAATGTATTTTGAGATAT-AGAACCTTTGTTTTGCCATCACCAG 742 | || ||||||||||||||| ||||||| | | | ||||| ||||||| |||| ||| Sbjct 897 TAAAATCTTTACTCCTAAATGTCTTTTGAGGTTTCA-AACCTCTGTTTTGTCATCTCCAC 955 Query 743 CGCCGTCTCCATCGTCTCTGCCTCCT 768 || | ||||||||| ||| ||||||| Sbjct 956 CGTCATCTCCATCGCCTCCGCCTCCT 981 > Ahg338015 jgi|Araly1|338015|fgenesh1_pg.C_scaffold_2000114 Length=762 Score = 217 bits (117), Expect = 1e-55 Identities = 271/341 (79%), Gaps = 28/341 (8%) Strand=Plus/Plus Query 67 ATGTCCCAACCTCAACACATGCACACTTTCTGC-A-G--C----GT-CGACAGCTTCACA 117 |||||||||||||| |||||||||||||||||| | | | | ||||| ||||||| Sbjct 1 ATGTCCCAACCTCACCACATGCACACTTTCTGCGACGACCAATTATCCGACAACTTCACA 60 Query 118 CAAACCAGCTCCTACGAAA-CAAACCG-CAACATCCTACTCACCACTCTCAGCTTGA-C- 173 ||||||||||| ||| ||| ||||||| || | |||||| | ||||| | ||| | Sbjct 61 CAAACCAGCTCATAC-AAATCAAACCGTGAA-ACCCTACTTTCTTCTCTC--CGTGACCA 116 Query 174 TTCCTCGCTC-GTACACTATTTAAACGCCACAATCGGTCTCAGCCCCGACACAGTCTATG 232 |||||| ||| | || ||||| || |||||||||||||| ||||||||||||||||||| Sbjct 117 TTCCTCCCTCGGAAC-CTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATG 175 Query 233 GCATGTTCCTCTGTAGAGGAGACATCAACACAACATCTTGCTCAGACTGTGTTCAA-ACC 291 ||||||||||||| |||||||| || || ||||||||| || |||||||| ||| ||| Sbjct 176 GCATGTTCCTCTGCCGAGGAGACCTCCCCAAAACATCTTGTTCGGACTGTGT-CAAGACC 234 Query 292 GCAGCAATCGAGATCGCTACAAA---CTGTACTCTTAACAAAAGA--GCTTTCATATACT 346 ||| | | || ||| ||| ||| ||| ||| | | |||| | ||| | ||||||| Sbjct 235 GCAACCGTAGAAATCACTAAAAATAACTGCACT-TCCAGAAAA-ACTGCTCTAATATACT 292 Query 347 ACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTTC 387 |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct 293 ACGAGGAGTGTATGGTTCGTTACTCCAATGTGTCCTTCTTC 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31642021110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5