BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63570.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474997 jgi|Araly1|474997|fgenesh2_kg.2__127__AT1G63570.1 1205 0.0
Ahg474999 jgi|Araly1|474999|fgenesh2_kg.2__129__AT1G63550.1 457 7e-128
Ahg338015 jgi|Araly1|338015|fgenesh1_pg.C_scaffold_2000114 217 1e-55
> Ahg474997 jgi|Araly1|474997|fgenesh2_kg.2__127__AT1G63570.1
Length=790
Score = 1205 bits (652), Expect = 0.0
Identities = 745/790 (94%), Gaps = 5/790 (1%)
Strand=Plus/Plus
Query 68 TGTCCCAACCTCAACACATGCACACTTTCTGC-A-GCGT-CGACAGCTTCACACAAACCA 124
|||||||||||||||||||||||||||||||| | | | ||||| ||||||||||||||
Sbjct 2 TGTCCCAACCTCAACACATGCACACTTTCTGCAATCCTTCCGACAACTTCACACAAACCA 61
Query 125 GCTCCTACGAAACAAACCGCAACATCCTACTCACCACTCTCAGCTTGACTTCCTCGCTCG 184
| || |||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||
Sbjct 62 GTTCATACGAAACAAACCGCAACATCCTACTCACCGCTCTCAGCTTGTCTTCCCCTCTCG 121
Query 185 TACACTATTTAAACGCCACAATCGGTCTCAGCCCCGACACAGTCTATGGCATGTTCCTCT 244
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 122 TACACTATTTAAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATGGCATGTTCCTCT 181
Query 245 GTAGAGGAGACATCAACACAACATCTTGCTCAGACTGTGTTCAAACCGCAGCAATCGAGA 304
||||||||||||||||||||||| ||||||| |||||||| ||||||||| |||||||||
Sbjct 182 GTAGAGGAGACATCAACACAACAACTTGCTCCGACTGTGTCCAAACCGCAACAATCGAGA 241
Query 305 TCGCTACAAACTGTACTCTTAACAAAAGAGCTTTCATATACTACGACGAGTGTATGGTTC 364
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 242 TCGCTACAAACTGTACTCTTAACAAAAGAGCGTTCATATACTACCAAGAGTGTATGGTTC 301
Query 365 GATACTCAAATGTTTCCTTCTTCTCTGAATTTGAAAGTAAACCAGTCATCGTTCGTTACT 424
||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 302 GATACTCAAATGTTTACTTCTTCTCCGAATTTGAAAGTAAACCAGTCATCGTTCTTTACT 361
Query 425 CTCTTCGTTCTGCTCCAAACTCAAACCGGTTTAACCAAACCCTATCCAATAAATTAGACC 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 CTCTTCGTTCTGCTCCAAACTCAAACCGGTTTAACCAAACCCTATCCAATAAATTGGACC 421
Query 485 AACTGATTCCTAACGTCTCTCCGTCAACTTTGATACCGTATTTTGTGGAGGATCAAGAAC 544
|||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||
Sbjct 422 AACTGATTCCTAACGTCTCTTCGTCAACTTTGATTCCATATTTCGTGGAGGATCAAGAAC 481
Query 545 GTGTGACTCAGTTAGAGGGTTCATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GTGTGACTCAGTTAGAGGGTTCATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATC 541
Query 605 TTGATCCATCAAACTGTACCATTTGCCTCAGATTTGCGTATGCAACAGTTTCAACTTGTT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TTGATCCATCAAACTGTACCATTTGCCTCAGATTTGCGTATGCAACAGTTTCAACTTGTT 601
Query 665 GCGGTGTACCAAGTTCGGCTCTGATTTTTACTCCTAAATGTATTTTGAGATATAGAACCT 724
||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 602 GCGGTATACCAAGTTCGGCTCTTATTTTCACTCCTAAATGTATTTTGAGGTATAGAACCT 661
Query 725 TTGTTTTGCCATCACCAGCGCCGTCTCCATCGTCTCTGCCTCCTATATCTCCGACATCTT 784
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 662 TTGTTTTGCCATCACCAGCGCCGTCTCCATCGTCTCTGCCTCCTCTATCTCCGTTGTCTC 721
Query 785 CGCCTCCTCTGTCTCTGCCGCCTCAATTGCCGCCTCCTCTT-TCGCAACCACCGCCCCCG 843
||||||||||||||||||||||||||| ||||||||||||| | |||||| || || |||
Sbjct 722 CGCCTCCTCTGTCTCTGCCGCCTCAATCGCCGCCTCCTCTTAT-GCAACCGCCTCCGCCG 780
Query 844 CTGAGCACTT 853
|||| |||||
Sbjct 781 CTGAACACTT 790
> Ahg474999 jgi|Araly1|474999|fgenesh2_kg.2__129__AT1G63550.1
Length=1366
Score = 457 bits (247), Expect = 7e-128
Identities = 464/566 (82%), Gaps = 26/566 (5%)
Strand=Plus/Plus
Query 216 CCCCGACACAGTCTATGGCATGTTCCTCTGTAGAGGAGACATCAACACAACATCTTGCTC 275
||| ||||||||| |||| ||||||||||||||||||||||||| |||| |||||||| |
Sbjct 429 CCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCACAGCATCTTGCGC 488
Query 276 AGACTGTGTTCAAACCGCAGCAATC-GAGATCGCTACAAACTGTACTCTTAACAAAAGAG 334
||| ||||| ||||||||| ||| | |||||||||||||| |||||||||||||||||||
Sbjct 489 AGATTGTGTCCAAACCGCAACAA-CTGAGATCGCTACAAATTGTACTCTTAACAAAAGAG 547
Query 335 CTTTCATATACTACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTTCTCTGAAT 394
| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 548 CGGTCATATACTACGAGGAGTGTATGGTTCGATACTCAAATGTTTCTTTCTCCTCTGAAT 607
Query 395 TTGAAAGTAA-ACCA-GTCATCGTTCGT-TACTCTCTTCGTTCTGCTCCAAACTCAAAC- 450
| ||| | | |||| | |||| | | ||||||||||| |||||||||||| | | |
Sbjct 608 TGGAAT-TCACACCAAG-CATCACTA-TATACTCTCTTCGCTCTGCTCCAAACCCGA-CT 663
Query 451 CGGTTTAACCAAACCCT-A-TCCAATAAATT-AGACCAACTGAT-TCCTAACGTCTCTCC 506
||||| || ||||| || | | || ||||| || | ||||||| | | ||| | ||| |
Sbjct 664 CGGTTCAATCAAACACTTACTG-AA-AAATTCAG-CGAACTGATATTC-AACATATCTTC 719
Query 507 GTCAACTTTGATACCGTATTTTGTGGAGGATCAAGAACGTGTGACTCAGTTAGAGGGTTC 566
||| ||||||| || ||||| ||||||||||||||||||||||| || | ||| |||||
Sbjct 720 GTCCTCTTTGATTCCATATTTCGTGGAGGATCAAGAACGTGTGACACAATCAGAAGGTTC 779
Query 567 ATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATCTTGATCCAT-CAAACTGTACCA 625
|||||||||| ||||||| |||| |||||||||||||||||| | ||| |||||||
Sbjct 780 TTATGATTTAGAGTCAATGGTTCAATGTAGTCCTGATCTTGATATTTTCAA-CTGTACCG 838
Query 626 TTTGCCTCAGATTTGCGTA-TGCAACAGTTTCAACTTGTTGCGGTGTACCAAGTT-CGGC 683
|||| || || |||| | | || | ||||||||||||||||| | ||||||| || |
Sbjct 839 TTTGTCTTAGGGTTGCCTTCTT-AAGAATTTCAACTTGTTGCGGTTTGCCAAGTTACG-C 896
Query 684 TCTGATTTTTACTCCTAAATGTATTTTGAGATAT-AGAACCTTTGTTTTGCCATCACCAG 742
| || ||||||||||||||| ||||||| | | | ||||| ||||||| |||| |||
Sbjct 897 TAAAATCTTTACTCCTAAATGTCTTTTGAGGTTTCA-AACCTCTGTTTTGTCATCTCCAC 955
Query 743 CGCCGTCTCCATCGTCTCTGCCTCCT 768
|| | ||||||||| ||| |||||||
Sbjct 956 CGTCATCTCCATCGCCTCCGCCTCCT 981
> Ahg338015 jgi|Araly1|338015|fgenesh1_pg.C_scaffold_2000114
Length=762
Score = 217 bits (117), Expect = 1e-55
Identities = 271/341 (79%), Gaps = 28/341 (8%)
Strand=Plus/Plus
Query 67 ATGTCCCAACCTCAACACATGCACACTTTCTGC-A-G--C----GT-CGACAGCTTCACA 117
|||||||||||||| |||||||||||||||||| | | | | ||||| |||||||
Sbjct 1 ATGTCCCAACCTCACCACATGCACACTTTCTGCGACGACCAATTATCCGACAACTTCACA 60
Query 118 CAAACCAGCTCCTACGAAA-CAAACCG-CAACATCCTACTCACCACTCTCAGCTTGA-C- 173
||||||||||| ||| ||| ||||||| || | |||||| | ||||| | ||| |
Sbjct 61 CAAACCAGCTCATAC-AAATCAAACCGTGAA-ACCCTACTTTCTTCTCTC--CGTGACCA 116
Query 174 TTCCTCGCTC-GTACACTATTTAAACGCCACAATCGGTCTCAGCCCCGACACAGTCTATG 232
|||||| ||| | || ||||| || |||||||||||||| |||||||||||||||||||
Sbjct 117 TTCCTCCCTCGGAAC-CTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATG 175
Query 233 GCATGTTCCTCTGTAGAGGAGACATCAACACAACATCTTGCTCAGACTGTGTTCAA-ACC 291
||||||||||||| |||||||| || || ||||||||| || |||||||| ||| |||
Sbjct 176 GCATGTTCCTCTGCCGAGGAGACCTCCCCAAAACATCTTGTTCGGACTGTGT-CAAGACC 234
Query 292 GCAGCAATCGAGATCGCTACAAA---CTGTACTCTTAACAAAAGA--GCTTTCATATACT 346
||| | | || ||| ||| ||| ||| ||| | | |||| | ||| | |||||||
Sbjct 235 GCAACCGTAGAAATCACTAAAAATAACTGCACT-TCCAGAAAA-ACTGCTCTAATATACT 292
Query 347 ACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTTC 387
|||| |||||||||||||| ||||| ||||| |||||||||
Sbjct 293 ACGAGGAGTGTATGGTTCGTTACTCCAATGTGTCCTTCTTC 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5