BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63580.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315060 jgi|Araly1|315060|fgenesh1_pm.C_scaffold_2000093 1170 0.0
> Ahg315060 jgi|Araly1|315060|fgenesh1_pm.C_scaffold_2000093
Length=822
Score = 1170 bits (633), Expect = 0.0
Identities = 760/823 (92%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 1 ATGACAAGAATCATTGATGTTTCCCTGTTTTGCTTCTTCCTATTCTCTCTTGGAGCCATG 60
|||||||||| |||||||||| | ||||||||||||||| | ||||||||||| ||||||
Sbjct 1 ATGACAAGAACCATTGATGTTGCTCTGTTTTGCTTCTTCTTGTTCTCTCTTGGGGCCATG 60
Query 61 TCCCAACCTTCTCAAAATCTAACTGATTGCAACCAATTTCCCGACACTTATCAATCAAAC 120
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 TCCCAACCTTCTCAAAATCTAACCGATTGCAACCAATTACCCGACACTTATCAATCAAAC 120
Query 121 CGCAACACCGTCCTCTCCACTCTTCGTAATCATTCCTCCCTCGGAAGCTATTACTTCAAT 180
||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||
Sbjct 121 CGCAACACCGTCCTCTCAACTCTTCGCAACCGTTCCTCCCTCGGAAGCTATTACTTCAAT 180
Query 181 GCCACGGCCGGTCTAAGCCCAAACACAGTCTATGGCATGTTCCTGTGCATAGGAAACATA 240
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 GCCACGGCCGGTCTTAGCCCAAATACAGTCTATGGCATGTTCCTATGCATAGGAAACATA 240
Query 241 AGCAAAACATCTTGTTCAAACTGTGTCCATTCCGCAACGTTAGAAATGGATAAATCCTGT 300
|||||||||||||||||||||||||||||||| || || |||| |||||||||||| ||
Sbjct 241 AGCAAAACATCTTGTTCAAACTGTGTCCATTCTGCGACTTTAGGAATGGATAAATCATGC 300
Query 301 GAATCTCATGACACATCTTTCATGTTCTCTGACGAGTGTATGGTTCGGTACTCGGATAAT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GATTCTCATGACACATCTTTCATGTTCTCTGACGAGTGTATGGTTCGGTACTCGGACGTT 360
Query 361 TCTTTCTTTTCACTCGTAGAAGATTCACCTGCCA-CCTTTAGTTACTCTCAGAATGATTC 419
|||||||| || |||||||| ||| ||||| || ||| |||||||| || |||||||||
Sbjct 361 TCTTTCTTCTCTCTCGTAGAGGATGCACCT-ACATCCTCTAGTTACTATCGGAATGATTC 419
Query 420 TTTGAGTTATCCGCAATTTTACAATCAAACACTTCCTGGAAAATTAGACGAGCTTATCCT 479
||||| || ||| || |||| ||| ||||||||||||||||| ||||| ||||| || |
Sbjct 420 TTTGAATTCTCCTCATTTTTTTAATAAAACACTTCCTGGAAAAATAGACAAGCTTGTCTT 479
Query 480 CAAAGCCCCCTCATCTTTTTCGTCACCGGTTCCATATTTTGTGGAAGATAAAGAACATGT 539
|| ||| |||| |||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 CAGAGCATCCTCGTCTTCTTCGTCACCGGTTCCATATTTTGTGGAAGATCAAGAACATGT 539
Query 540 GACTCAAGTGGAAGGTTCGTATGATTTAGAGGCAATGGCTCAGTGTAGTCCTGATCTTGA 599
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GACTCAACTGGAAGGTTCGTATGATTTAGAGGCAATGGCCCAGTGTAGTCCTGATCTTGA 599
Query 600 TCCAAGCAGCTGCACCGTGTGCTTGGGACTTGTGGTCGAAAAATTCTCCGAATGTTGCAG 659
|||||| | ||||||||| |||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 600 TCCAAGTAACTGCACCGTTTGCTTGGGGCTTGTAGTCGAAAAATTCTCCGAGTGTTGCAG 659
Query 660 CCAATCTCGTTGGGCTCGGATCCACTTTCCTAAATGTCTTCTGAGGTATGACATCTCTGC 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 CCAATCTCGTTGGGCTCGGATCTACTTTCCTAAATGTCTTCTGAGGTATGACATCTCTGC 719
Query 720 TTTGCAACCAAACCTAACGAGTCTTGGCGTTACAACAAAAGGAGATGATATATTTGGGAG 779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTGCAACCAAACCTAACGAGTTTTGGCGTTACAACAAAAGGAGATGATATATTTGGGAG 779
Query 780 AACGTTTATTGCAATCATGATAGGTTTACTAATGGGTTTATGA 822
||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACCTTTATTGCAATCATGATAGGTTTACTAATGGGTTTATGA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5