BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63610.2
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474995 jgi|Araly1|474995|fgenesh2_kg.2__125__AT1G63610.1 1007 0.0
> Ahg474995 jgi|Araly1|474995|fgenesh2_kg.2__125__AT1G63610.1
Length=1169
Score = 1007 bits (545), Expect = 0.0
Identities = 742/830 (89%), Gaps = 42/830 (5%)
Strand=Plus/Plus
Query 10 AAGGAGCGTGCaaaaaaaaGTCACAGTCGCGAGATAAAATCCGAAGCTAGCGAAAAGCTT 69
|||||||||||||| ||||||||||||||| | | || || ||||||||||||||
Sbjct 1 AAGGAGCGTGCAAATAAAAGTCACAGTCGC--G-----A-CCCAAACTAGCGAAAAGCTT 52
Query 70 CGATTTCCAGCGATCCTAGTGTTGGA-TTCTACGATTTTAGGGTTTA-AATCTTG-AGAT 126
||||||||||||||||||| |||||| || || | ||| | || | || | | ||||
Sbjct 53 CGATTTCCAGCGATCCTAGAGTTGGATTTTTAGGGTTTGAATCTTGAGAA-C--GAAGAT 109
Query 127 GTGTTCGTTATCAATGCAATTCTCGCTCTTGCAATCACCACCATCTCGTCCTTGTCCGTC 186
|||||||||||| |||||||||||||| ||||||| |||||||||| |||| | ||||
Sbjct 110 GTGTTCGTTATCGATGCAATTCTCGCTTTTGCAAT---CACCATCTCGACCTTCTTCGTC 166
Query 187 TTTTTTAGCCAACCATGAACCTAAACTCTCTACTACTTCCTCCTCTGTGACCTTCCCCTT 246
||||||||||||||||||||||||||||| |||| |||||||||||| || |||||||||
Sbjct 167 TTTTTTAGCCAACCATGAACCTAAACTCTTTACTTCTTCCTCCTCTGCGAGCTTCCCCTT 226
Query 247 GAAGACGAACACTTGGAAGTGTAGCGGAACTGGGAATTTGTTGGTTTTGAGAGTTAAAGC 306
| | | | ||||||||| ||| ||||| |||||||||| ||||| |||||||||||||
Sbjct 227 G-A-A-G---ACTTGGAAGAGTACCGGAAGTGGGAATTTGATGGTTCTGAGAGTTAAAGC 280
Query 307 TTATGGTTCTTCTTCTGATTCCTCTGCAGATT-C-CTCCACGCCTCCCAATGGCACTCGG 364
||||||||||||||| | ||| |||| | ||||| | | |||||||||||
Sbjct 281 TTATGGTTCTTCTTC----T--TCT---GATTCCTCTCCA-GAGT-CCAATGGCACT--- 326
Query 365 CAGCAGCCCAAAAGCAGAAGGGATATTCTACTGGAGTATGTTCAGAATGTGAAGCCAGAG 424
| | |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 327 C-G--GCCCAAAAGCAGGAGGGATATTCTACTGGAGTATGTTCAGAATGTGAAGCCTGAG 383
Query 425 TTCATGGAGATGTTCGTTAAACGTGCCCCTAAACATGTGGTTGAAGCAATGAGACAAACT 484
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 384 TTCATGGAGATGTTCGTTAAACGTGCCCCTAAACATGTGGTTGATGCAATGAGACAAACT 443
Query 485 GTGACGAATATGATTGGAACGCTGCCACCGCAGTTTTTCGCCGTTACTGTCACCTCTGTT 544
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 444 GTGACGAATATGATTGGAACTCTGCCACCGCAGTTTTTTGCGGTTACTGTCACCTCTGTT 503
Query 545 GCTGAGAACCTTGCACAGCTGATGATGAGCGTGTTGATGACTGGATATATGTTTAGAAAC 604
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 504 GCTGAGAATCTTGCACAGCTGATGATGAGCGTATTGATGACTGGATATATGTTTAGAAAT 563
Query 605 GCTCAATATCGTCTTGAATTGCAACAAAGTTTGGAGCAGGTTGCTCTTCCTGAACCACGT 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GCTCAGTATCGTCTTGAATTGCAACAAAGTTTGGAGCAGGTTGCTCTTCCTGAACCACGT 623
Query 665 GATCAAAAGGGGGGTGATGAAGACTATGCACCAGGAACTCAAAAGAATGTTTCTGGGGAA 724
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 624 GATCAAAAGGGGGGTGAGGAAGACTATGCACCAGGAACTCAAAAGAATGTTTCAGGGGAA 683
Query 725 GTGATCAGGTGGAATAACGTATCTGGCCCTGAGAAAATTGATGCAAAAAAGTATATCGAG 784
|| || |||||||||||| | ||||| ||||||||||||||||| |||||||||||||||
Sbjct 684 GTAATTAGGTGGAATAACATTTCTGGTCCTGAGAAAATTGATGCGAAAAAGTATATCGAG 743
Query 785 CTTCTGGAAGCAGAGATCGAAGAACTCAACCGTCAAGTGGGGAGAAAATC 834
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CTTCTGGAAGCAGAGATCGAAGAACTCAACCGTCAAGTGGGGAGAAAATC 793
Score = 599 bits (324), Expect = 2e-170
Identities = 351/364 (96%), Gaps = 1/364 (0%)
Strand=Plus/Plus
Query 896 GAGCTTACAAGCACTGCAGGCGAAGATGTTGCCGTAGCCATGAATACATTTGTCAAGAGG 955
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 795 GAGCTTACAAGCACCGCAGGCGAAGATGTTGCTGTAGCCATGAATACATTTGTCAAGAGG 854
Query 956 CTTCTAGCTGTGTCAGACCCTAACCAAATGAAGACGAATGTGACAGAGACAAGCGCAGCG 1015
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 855 CTTCTAGCTGTGTCAGACCCAAATCAAATGAAGACGAATGTGACAGAGACAAGCGCAGCG 914
Query 1016 GACCTTGCAAAATTGTTGTATTGGTTAATGGTAGTTGGATATAGCATTCGCAATATCGAG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GACCTTGCAAAATTGTTGTATTGGTTAATGGTAGTTGGATATAGCATTCGCAATATCGAG 974
Query 1076 GTTCGGTTTGATATGGAACGCGTGCTTGGTACTCAACCGAAGCTTGCAGAGCTGCCTCCT 1135
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 975 GTTCGGTTTGATATGGAACGTGTGCTTGGCACTCAACCGAAGCTTGCAGAGCTGCCTCCT 1034
Query 1136 GGTGAAATTATTTGAGCACTGTAATGAATAAAAGCGGGGGCttttttttACCCGAAGAAC 1195
||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1035 GGTGAAATTATTTGAACACTGTAATGAATAAAACCAGGG-CTTTTTTTTACCCGAAGAAC 1093
Query 1196 TCAGATTTCATTTGTCAAGTAATTTTTATTGTAAAATTGATGGAACTCACTTTGAAGAGA 1255
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1094 TCAGATTTCACTTGTCAAGTAATTTTTATTGTAAAATTGATTGAACTTACTTTGAAGAGA 1153
Query 1256 AGAC 1259
||||
Sbjct 1154 AGAC 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5