BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63660.1 Length=1936 Score E Sequences producing significant alignments: (Bits) Value Ahg924591 jgi|Araly1|924591|scaffold_200152.1 2732 0.0 > Ahg924591 jgi|Araly1|924591|scaffold_200152.1 Length=1700 Score = 2732 bits (1479), Expect = 0.0 Identities = 1628/1701 (96%), Gaps = 5/1701 (0%) Strand=Plus/Plus Query 119 CCAAGCTCTAAGACCCTATCCATGGAGACGCCGACGATGAAGCCTGATACGGTTTTGATT 178 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCAAGCTCTAAAACCCTATCCATGGAGACGCCGACGATGAAGCCTGATACGGTTTTGATT 60 Query 179 CTTGATTACGGCTCCCAATACACACATCTCATCACTCGCCGTATTCGTTCTCTCAACGTC 238 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 CTTGATTACGGCTCCCAGTACACACATCTCATTACTCGCCGTATTCGTTCTCTCAACGTC 120 Query 239 TTCTCTCTCGTTATCAGTGGAACTTCATCGCTCAAATCAATCACTAGCTATAACCCACGA 298 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTCTCTCTCGTAATCAGTGGAACTTCATCGCTCAAATCAATCACTAGCTATAACCCACGA 180 Query 299 GTTGTTATCCTCTCCGGTGGTCCTCACTCTGTTCACGCGCTCGACGCGCCGAGTTTCCCC 358 || |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct 181 GTCGTTATCCTCTCCGGCGGACCTCACTCTGTTCACGCGCTCGACGCGCCGAGTTTTCCC 240 Query 359 GAGGGGTTTATCGAATGGGCAGAGTCGAACGGTGTTTC-TGTTTTGGGGATTTGCTATGG 417 || |||||||| || ||||||||||||||||||| ||| ||||||||||||||| ||||| Sbjct 241 GACGGGTTTATGGAGTGGGCAGAGTCGAACGGTG-TTCATGTTTTGGGGATTTGTTATGG 299 Query 418 TTTGCAATTGATTGTGCAGAAGCTTGGTGGTGTTGTTGTGGAAGGAGAGAGCAAAGAGTA 477 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 300 TTTGCAATTGATTGTGCAGAAGCTTGGAGGTGTTGTTGTGGAAGGAGAGAGTAAAGAGTA 359 Query 478 TGGGAAAATGGAGATTGAAGTGAAAGGTAAATCTGAGATTTTTGGGTCAGAGAGTGGTGG 537 |||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||| Sbjct 360 TGGGAAGATGGAGATTGAAGTGAAGGGCAAATCGGAGATTTTTGGGTCGGAGAGTGGTGG 419 Query 538 TGAGAAGCAAATGGTTTGGATGAGTCATGGTGATGAAGCGGTTAAGCTTCCTGAAGGATT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 420 AGAGAAGCAAATGGTTTGGATGAGTCATGGTGATGAAGCGGTTAAGCTTCCTGAAGGGTT 479 Query 598 TGAAGTTGTGGCTCAGAGTGCTCAAGGAGCTGTTGCTGCTTTGGAGAGTCGGAAGAAGAA 657 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 480 TGAAGTTGTGGCTCAGAGTGCTCAAGGAGCTGTTGCTGCTTTGGAGAATCGGAAGAAGAA 539 Query 658 GATTTATGGATTGCAGTATCATCCTGAGGTGACACATTCACCAAAAGGAATGGAGACACT 717 |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| Sbjct 540 GATTTATGGATTGCAGTATCATCCTGAGGTAACTCATTCACCAAAAGGGATGGAGACACT 599 Query 718 TCGGCATTTCCTCTTTGATGTGTGTGGAGTATCTGCGGATTGGAAAATGGAAGATCTGAT 777 |||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| Sbjct 600 TCGGCACTTCCTCTTTGATGTATGTGGAGTATCTGCCGATTGGAAAATGGAGGATCTGAT 659 Query 778 GGAAGAAGAGATCAAAGTGATTAACAAAACCGTTGCATCTGACGAACATGTCATTTGCGC 837 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 660 GGAAGAAGAGATCAAAGTGATTAACCAAACCGTTGCATCTGACGAACATGTCATTTGCGC 719 Query 838 CTTGTCAGGAGGTGTAGACTCTACTGTTGCCGCAACTCTTGTTCACAAGGCAATTGGAGA 897 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 720 CTTGTCAGGAGGTGTGGACTCTACTGTTGCTGCAACTCTTGTTCACAAGGCAATTGGAGA 779 Query 898 TAGGCTTCATTGCATCTTTGTTGATAACGGGCTATTAAGGTATAAGGAGCAAGAACGTGT 957 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TAGGCTTCATTGTATATTTGTTGATAACGGGCTATTAAGGTATAAGGAGCAAGAACGTGT 839 Query 958 GATGGATACCTTTGAGAGAGACTTGCATCTACCTGTTACTTGTGTTGATGCATCCGAGCG 1017 ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 840 GATGGATACCTTTGAGAGAGACTTGCATCTACCTGTTACTTGTGTAGACGCATCTGAGCG 899 Query 1018 GTTTTTGAGTGAACTTAAAGGCGTTGTGGATCCCGAGACAAAGAGAAAGATAATCGGGAG 1077 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 900 GTTTTTGAGTGAACTTAAAGGCGTTGTGGATCCCGAGACAAAGAGAAAGATAATCGGCAA 959 Query 1078 GGAGTTCATCAACATTTTTGATCAATTTGCCCAAGAGTTAGAGAAAAAGCATGGGAAGAA 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GGAGTTCATCAACATTTTTGATCAATTTGCCCAAGAGTTAGAGAAAAAGCATGGGAAGAA 1019 Query 1138 ACCCGCTTTTCTAGTTCAAGGGACTCTGTACCCTGATGTGATTGAGTCGTGCCCTCCCCC 1197 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 ACCTGCTTTTCTAGTTCAAGGGACTCTGTACCCTGATGTGATTGAGTCGTGCCCTCCCCC 1079 Query 1198 GGGTACTGATAGGACTCATTCTCACACCATCAAAAGTCACCATAATGTTGGAGGACTCCC 1257 ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1080 TGGTACTGATAGAACTCATTCTCACACCATCAAAAGTCATCATAACGTTGGAGGACTCCC 1139 Query 1258 TAAAGACATGAAATTGAAGCTCATCGAACCCCTCAAGCTTCTCTTCAAAGATGAGGTTCG 1317 ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 1140 TAAAGACATGAAATTGAAGCTGATCGAACCACTCAAGCTTCTCTTCAAAGACGAGGTTCG 1199 Query 1318 TGAGCTCGGAAGAATCTTGAATGTGCCGGTAGGGTTCTTGAAGCGTCACCCATTCCCCGG 1377 |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 1200 TGAGCTCGGAAGAATCTTGAATGTTCCCGTAGGATTCTTGAAGCGTCACCCATTCCCCGG 1259 Query 1378 TCCAGGACTCGCAGTTAGAGTCTTGGGCGATGTCACCCAAGGAAACGCCCTTGAGGTTCT 1437 ||| ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1260 TCCGGGATTGGCAGTTAGAGTCTTGGGCGATGTCACCCAAGGAAACGCCCTCGAGGTTCT 1319 Query 1438 TCGTCAGGTTGATGAGATATTCATTCAATCAATCAGAGATGCGGGTCTCTATGATTCGAT 1497 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1320 TCGTCAGGTTGATGAGATTTTCATCCAATCAATCAGAGATGCGGGTCTCTATGATTCGAT 1379 Query 1498 CTGGCAAGCTTTCGCAGTGTTCTTGCCTGTAAGATCAGTTGGAGTCCAAGGTGACAAGAG 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 CTGGCAAGCTTTCGCAGTGTTCTTGCCTGTAAGATCAGTTGGAGTCCAAGGTGACAAGAG 1439 Query 1558 AACACATTCTCATGTTGTTGCTCTTCGTGCAGTTACAAGCCAAGATGGAATGACCGCAGA 1617 |||||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1440 AACACATTGTCATGTGGTTGCTCTTCGCGCAGTTACAAGCCAAGATGGAATGACTGCAGA 1499 Query 1618 TTGGTTCAATTTTGAGCACAAGTTTCTGGACGATGTTTCCCGGAAAATCTGTAACAGCGT 1677 |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 1500 CTGGTTCAATTTTGAGCACAAGTTTTTGGATGATGTTTCCCGGAAAATCTGTAACAGCGT 1559 Query 1678 TCAAGGAGTAAACCGTGTGGTTCTAGACATTACATCAAAGCCTCCTTCAACCATCGAATG 1737 ||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| Sbjct 1560 TCAAGGAGTAAACCGTGTGGTTCAAGACATTACATCAAAGCCTCCTTCAACGATTGAATG 1619 Query 1738 GGAATAAAG-AAAA-CATATACT-GAGTCTTTTATTTATGGGTGTCTGCAATTCTTCTAC 1794 ||||||||| |||| |||| | | |||||||||||||||||||||||||||||||||||| Sbjct 1620 GGAATAAAGTAAAAACATAAATTTGAGTCTTTTATTTATGGGTGTCTGCAATTCTTCTAC 1679 Query 1795 CATGTAAAATAGATTATCATC 1815 ||||||||||||||||||||| Sbjct 1680 CATGTAAAATAGATTATCATC 1700 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72752367950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5