BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63660.1
Length=1936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924591 jgi|Araly1|924591|scaffold_200152.1 2732 0.0
> Ahg924591 jgi|Araly1|924591|scaffold_200152.1
Length=1700
Score = 2732 bits (1479), Expect = 0.0
Identities = 1628/1701 (96%), Gaps = 5/1701 (0%)
Strand=Plus/Plus
Query 119 CCAAGCTCTAAGACCCTATCCATGGAGACGCCGACGATGAAGCCTGATACGGTTTTGATT 178
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCAAGCTCTAAAACCCTATCCATGGAGACGCCGACGATGAAGCCTGATACGGTTTTGATT 60
Query 179 CTTGATTACGGCTCCCAATACACACATCTCATCACTCGCCGTATTCGTTCTCTCAACGTC 238
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CTTGATTACGGCTCCCAGTACACACATCTCATTACTCGCCGTATTCGTTCTCTCAACGTC 120
Query 239 TTCTCTCTCGTTATCAGTGGAACTTCATCGCTCAAATCAATCACTAGCTATAACCCACGA 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTCTCTCGTAATCAGTGGAACTTCATCGCTCAAATCAATCACTAGCTATAACCCACGA 180
Query 299 GTTGTTATCCTCTCCGGTGGTCCTCACTCTGTTCACGCGCTCGACGCGCCGAGTTTCCCC 358
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTCGTTATCCTCTCCGGCGGACCTCACTCTGTTCACGCGCTCGACGCGCCGAGTTTTCCC 240
Query 359 GAGGGGTTTATCGAATGGGCAGAGTCGAACGGTGTTTC-TGTTTTGGGGATTTGCTATGG 417
|| |||||||| || ||||||||||||||||||| ||| ||||||||||||||| |||||
Sbjct 241 GACGGGTTTATGGAGTGGGCAGAGTCGAACGGTG-TTCATGTTTTGGGGATTTGTTATGG 299
Query 418 TTTGCAATTGATTGTGCAGAAGCTTGGTGGTGTTGTTGTGGAAGGAGAGAGCAAAGAGTA 477
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 300 TTTGCAATTGATTGTGCAGAAGCTTGGAGGTGTTGTTGTGGAAGGAGAGAGTAAAGAGTA 359
Query 478 TGGGAAAATGGAGATTGAAGTGAAAGGTAAATCTGAGATTTTTGGGTCAGAGAGTGGTGG 537
|||||| ||||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 360 TGGGAAGATGGAGATTGAAGTGAAGGGCAAATCGGAGATTTTTGGGTCGGAGAGTGGTGG 419
Query 538 TGAGAAGCAAATGGTTTGGATGAGTCATGGTGATGAAGCGGTTAAGCTTCCTGAAGGATT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 AGAGAAGCAAATGGTTTGGATGAGTCATGGTGATGAAGCGGTTAAGCTTCCTGAAGGGTT 479
Query 598 TGAAGTTGTGGCTCAGAGTGCTCAAGGAGCTGTTGCTGCTTTGGAGAGTCGGAAGAAGAA 657
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 TGAAGTTGTGGCTCAGAGTGCTCAAGGAGCTGTTGCTGCTTTGGAGAATCGGAAGAAGAA 539
Query 658 GATTTATGGATTGCAGTATCATCCTGAGGTGACACATTCACCAAAAGGAATGGAGACACT 717
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 540 GATTTATGGATTGCAGTATCATCCTGAGGTAACTCATTCACCAAAAGGGATGGAGACACT 599
Query 718 TCGGCATTTCCTCTTTGATGTGTGTGGAGTATCTGCGGATTGGAAAATGGAAGATCTGAT 777
|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 600 TCGGCACTTCCTCTTTGATGTATGTGGAGTATCTGCCGATTGGAAAATGGAGGATCTGAT 659
Query 778 GGAAGAAGAGATCAAAGTGATTAACAAAACCGTTGCATCTGACGAACATGTCATTTGCGC 837
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 GGAAGAAGAGATCAAAGTGATTAACCAAACCGTTGCATCTGACGAACATGTCATTTGCGC 719
Query 838 CTTGTCAGGAGGTGTAGACTCTACTGTTGCCGCAACTCTTGTTCACAAGGCAATTGGAGA 897
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 CTTGTCAGGAGGTGTGGACTCTACTGTTGCTGCAACTCTTGTTCACAAGGCAATTGGAGA 779
Query 898 TAGGCTTCATTGCATCTTTGTTGATAACGGGCTATTAAGGTATAAGGAGCAAGAACGTGT 957
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAGGCTTCATTGTATATTTGTTGATAACGGGCTATTAAGGTATAAGGAGCAAGAACGTGT 839
Query 958 GATGGATACCTTTGAGAGAGACTTGCATCTACCTGTTACTTGTGTTGATGCATCCGAGCG 1017
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 840 GATGGATACCTTTGAGAGAGACTTGCATCTACCTGTTACTTGTGTAGACGCATCTGAGCG 899
Query 1018 GTTTTTGAGTGAACTTAAAGGCGTTGTGGATCCCGAGACAAAGAGAAAGATAATCGGGAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 GTTTTTGAGTGAACTTAAAGGCGTTGTGGATCCCGAGACAAAGAGAAAGATAATCGGCAA 959
Query 1078 GGAGTTCATCAACATTTTTGATCAATTTGCCCAAGAGTTAGAGAAAAAGCATGGGAAGAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGAGTTCATCAACATTTTTGATCAATTTGCCCAAGAGTTAGAGAAAAAGCATGGGAAGAA 1019
Query 1138 ACCCGCTTTTCTAGTTCAAGGGACTCTGTACCCTGATGTGATTGAGTCGTGCCCTCCCCC 1197
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACCTGCTTTTCTAGTTCAAGGGACTCTGTACCCTGATGTGATTGAGTCGTGCCCTCCCCC 1079
Query 1198 GGGTACTGATAGGACTCATTCTCACACCATCAAAAGTCACCATAATGTTGGAGGACTCCC 1257
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1080 TGGTACTGATAGAACTCATTCTCACACCATCAAAAGTCATCATAACGTTGGAGGACTCCC 1139
Query 1258 TAAAGACATGAAATTGAAGCTCATCGAACCCCTCAAGCTTCTCTTCAAAGATGAGGTTCG 1317
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1140 TAAAGACATGAAATTGAAGCTGATCGAACCACTCAAGCTTCTCTTCAAAGACGAGGTTCG 1199
Query 1318 TGAGCTCGGAAGAATCTTGAATGTGCCGGTAGGGTTCTTGAAGCGTCACCCATTCCCCGG 1377
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1200 TGAGCTCGGAAGAATCTTGAATGTTCCCGTAGGATTCTTGAAGCGTCACCCATTCCCCGG 1259
Query 1378 TCCAGGACTCGCAGTTAGAGTCTTGGGCGATGTCACCCAAGGAAACGCCCTTGAGGTTCT 1437
||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1260 TCCGGGATTGGCAGTTAGAGTCTTGGGCGATGTCACCCAAGGAAACGCCCTCGAGGTTCT 1319
Query 1438 TCGTCAGGTTGATGAGATATTCATTCAATCAATCAGAGATGCGGGTCTCTATGATTCGAT 1497
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 TCGTCAGGTTGATGAGATTTTCATCCAATCAATCAGAGATGCGGGTCTCTATGATTCGAT 1379
Query 1498 CTGGCAAGCTTTCGCAGTGTTCTTGCCTGTAAGATCAGTTGGAGTCCAAGGTGACAAGAG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CTGGCAAGCTTTCGCAGTGTTCTTGCCTGTAAGATCAGTTGGAGTCCAAGGTGACAAGAG 1439
Query 1558 AACACATTCTCATGTTGTTGCTCTTCGTGCAGTTACAAGCCAAGATGGAATGACCGCAGA 1617
|||||||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1440 AACACATTGTCATGTGGTTGCTCTTCGCGCAGTTACAAGCCAAGATGGAATGACTGCAGA 1499
Query 1618 TTGGTTCAATTTTGAGCACAAGTTTCTGGACGATGTTTCCCGGAAAATCTGTAACAGCGT 1677
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1500 CTGGTTCAATTTTGAGCACAAGTTTTTGGATGATGTTTCCCGGAAAATCTGTAACAGCGT 1559
Query 1678 TCAAGGAGTAAACCGTGTGGTTCTAGACATTACATCAAAGCCTCCTTCAACCATCGAATG 1737
||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1560 TCAAGGAGTAAACCGTGTGGTTCAAGACATTACATCAAAGCCTCCTTCAACGATTGAATG 1619
Query 1738 GGAATAAAG-AAAA-CATATACT-GAGTCTTTTATTTATGGGTGTCTGCAATTCTTCTAC 1794
||||||||| |||| |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1620 GGAATAAAGTAAAAACATAAATTTGAGTCTTTTATTTATGGGTGTCTGCAATTCTTCTAC 1679
Query 1795 CATGTAAAATAGATTATCATC 1815
|||||||||||||||||||||
Sbjct 1680 CATGTAAAATAGATTATCATC 1700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72752367950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5