BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63670.1 Length=2270 Score E Sequences producing significant alignments: (Bits) Value Ahg474984 jgi|Araly1|474984|fgenesh2_kg.2__114__AT1G63670.2 3459 0.0 > Ahg474984 jgi|Araly1|474984|fgenesh2_kg.2__114__AT1G63670.2 Length=2459 Score = 3459 bits (1873), Expect = 0.0 Identities = 2138/2264 (94%), Gaps = 26/2264 (1%) Strand=Plus/Plus Query 25 GGTCTTTGAGAATCGGTTTTACTAGATTGAAGACGAGAGTTTTGAATGATTGGTGAA--T 82 |||||||||||| || |||||||| |||| ||||||||||||||||||||||||||| | Sbjct 204 GGTCTTTGAGAAACGATTTTACTAAATTGGAGACGAGAGTTTTGAATGATTGGTGAATTT 263 Query 83 -TTGTTGATCATCAATGGAGAAGAAGAGATCACCAAGAAGTAGTAAGAGTCCTGGACCTG 141 ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| Sbjct 264 GTTGTTGATCATCAATGGAGAAGAAGCGATCACCGAGAAGTAGCAAGAGTCCTGGACCTG 323 Query 142 CAATTTTCCCTAAAAGCCCTCTTGTCTACGAGAGTTATAAGTCTGGTTGTGGTTGGAAAT 201 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 324 CAATTTTCCCTAAAAGCCCTCTTGTCTACGAGAATTATAAGTCTGGTTGTGGTTGGAAAC 383 Query 202 TGATAAAGTTCTTCGATTTCGGTCATGTCAAATCTGGTAATAAGAGACTTGGTTCAGAGA 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 TGATAAAGTTCTTCGATTTCGGTCATGTCAAATCTGGTAATAAGAGACTTGGTTCAGAGA 443 Query 262 AGAAGAAATTCGTCAGAGATTCTGCTGGTAATGTTTATACTAAAAGTCAGCTTGATTTGC 321 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 444 AGAAGAAATTCATCAGAGATTCTGCTGGTAATGTTTATACTAAAAGCCAGCTTGATTTGC 503 Query 322 TTAAGAAGCTTCATGAGAAGTGTCAGTGTAATGATCGGATTGTGGAAGAAGAGAGATCAT 381 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 504 TTAAGAAGCTTCATGAGAAGTGTCAGTGTAATGATCGGATTGTGGAAGAAGAGAGTTCAT 563 Query 382 GTAAGCCTAAAACAAGGAGAAGATCTTTGAGTTCTGATAGAGAACTTGAGAAGTATGAAT 441 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 564 GTAAACCTAAAACAAGGAGAAGATCTTTGAGTTCTGAAAGAGAACTTGAGAAGTATGAAT 623 Query 442 CTAAACCTGTTCAGGGATTGCTAGAGAGAGAGATAAGAAGGATCAAGAATCTAAAGGATG 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 624 CTAAACCTGTTCAGGGATTGCTAGAGAGAGAGATAAGAAGGATCAAGAATCTAAAGGAGG 683 Query 502 AAACTTGTGATGTCCCGGATAAACAAAAGCAATCTTCGTTGAGTGAAATT--G-AG---A 555 ||||||| |||| ||| ||||| |||||||||||||| |||||||||||| | || | Sbjct 684 AAACTTGCGATGACCCTGATAAGCAAAAGCAATCTTCTTTGAGTGAAATTGAGAAGACAA 743 Query 556 ATGAT-AGTGATAAGCAGATGGATATGAAGAATGGGAGAGATTGTAAGAAGAGTTCAGAG 614 ||||| ||| |||| || || ||| |||||| |||||||||||||||||||||| ||||| Sbjct 744 ATGATAAGT-ATAATCAAATAGATCTGAAGAGTGGGAGAGATTGTAAGAAGAGTGCAGAG 802 Query 615 ATTAACCTTCAAGCTTGTGTGAATGAAGCTGCTGAAACCTTTATCTGTTCAAAGGCAGAA 674 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| || Sbjct 803 ATTAACCTTCAAGCTTGTGTGAATGAAGCTGCTGAAACATTTATTTGTTCCAAGGCGGAG 862 Query 675 GAGAAGGGGAAAGATCGGTCTAAGCAGTTCATGGAGGCGTTAGATATTCTAAGTTCGAAC 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 863 GAGAAGGGGAAAGATCGGTCTAAGCAGTTCATGGAGGCGTTAGATATTCTAAGTTCGAAC 922 Query 735 AAAGAATTGTTCATTACACTCTTACAAGATCCTCATTCATTTTCGGCGaaaaaaaGCT-T 793 ||||||||||||||||||||||||||||||||| ||||| ||| || ||||||| | Sbjct 923 AAAGAATTGTTCATTACACTCTTACAAGATCCTAATTCA--TTC-TCG-AAAAAAGGTCA 978 Query 794 AGACTTGGAGGGATCTAAGGTAAAAGAACCGCGTGATAAATCTCCATCAATGGCTGATGA 853 ||||||||| |||| ||||||||| |||||||| ||||| |||||||||| ||||||||| Sbjct 979 AGACTTGGAAGGATGTAAGGTAAAGGAACCGCGGGATAACTCTCCATCAAGGGCTGATGA 1038 Query 854 TTTGGATAGCATTGTTCTCTTGAAGCCTAGATTATCAAGCTCGGTTGATGATAAAGTGTA 913 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1039 TTTGGATAACATTGTTCTCTTGAAGCCTAGATTATCAAGTTCGGTTGATGATAAAGTGTA 1098 Query 914 CTTGAGATTCAAACATCTAGCCAAGAAGTTGAAACTTGTTGTTGGATCTAACAAAGACAG 973 |||||||||||||||||| |||||||||||||| || |||||||||||||||||||| || Sbjct 1099 CTTGAGATTCAAACATCTGGCCAAGAAGTTGAAGCTCGTTGTTGGATCTAACAAAGATAG 1158 Query 974 CAATCACGCAGAAAACAAACCCGAAGGTAGCAGTAGAGGTAGAGAAATCGAGGCTGCTGC 1033 ||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||| Sbjct 1159 CAATCACGCAGAAAACAAACCTGAAGGTAGCGGTAAAGGTAGAGAAACCGAGGCTGCTGC 1218 Query 1034 TTTTAGAACAAGTGATGTTTCTACCAGTACAGTTGGTCATAGAAGCCCGGAGTCACCGGT 1093 |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| || Sbjct 1219 TTTTAGAACAAGTGATGTTTCTACAAGTACATTTGGACATAGAAGCCCGGAGTCACCAGT 1278 Query 1094 GTTTAGGCGCAAGAAACGGGTTGAATCCGATGTTTTCAAGCTAAGTATCGAGAACGATGT 1153 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1279 GTTTAGGCGCAAAAAACGGGTTGAATCCGATGTTTTCAAGCTAAGTATCGAGAACGATGT 1338 Query 1154 TTTGCCAAGGAGATTCATGGTGGAAAGGCAACAGGAGAGATTAAATTCTTCACCGGTTTA 1213 ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1339 TTTGCCAAGGAGACTCATGGTAGAAAGGCAACATGAGAGATTAAATTCTTCACCGGTTTA 1398 Query 1214 TGAAGTTCCTTATGC-ATTGAGTAGTTTGCAGACAAAGCTCAaagaaagaagacagaagc 1272 ||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1399 TGAAGTTCCTTAT-CAATTGAGTAGCTTGCAGACAAAGCTCAAAGAAAGAAGACAGAAGC 1457 Query 1273 tagagaagaagagagagagCTTCAAGTTGTGGTCTTTGGACAAGAACTTCGAGGTTTTTG 1332 |||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1458 TAGAGAAGAAAAGAGAGAGCTTCAAGTTGTGGTCTTTGGACAAAAACTGCGAGGTTTTTG 1517 Query 1333 ACCCGAATCCATACAATTCTAATCTAAGGTTTCTCGAAAACAATTGTACAGGTTCTTCTG 1392 | |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| Sbjct 1518 ATCCGAATCCATACAATTCTAATCTAAGGTCTCTCGACGGCAATTGTACAGGTTCTGCTG 1577 Query 1393 AGTACAAAAGTCTGAGAACTCATGTAGAAGACGGATTCGTGGAAGATAGATATCTTGAGA 1452 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1578 AGTACAAAAGTCTGAGAACTCATGTAGAAGACGGATTCGTGGAAGATAGATGTCTTGAGA 1637 Query 1453 GCTCATTAGCGGAGACGAATTTGAGCCTAGAAAGACAAGACTGCAACATTCATGACCCGA 1512 |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1638 GCTCATTAGCAGAGTCGAATTCGAGCCTAGAAAGACAAGACTGCAACATTCATGACCCGA 1697 Query 1513 AACAGGAGCAGGAACAACCGAGTCCTGTCTCTGTTCTTGAAAGGATTCATTTGGAAGACG 1572 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1698 AACAGGAGCAGGAACAACCGAGTCCTGTCTCTGTTCTTGAGAGGATTCATTTGGAAGATG 1757 Query 1573 AAACAGTTATCCCCGGAAATGTTAAAATATCTAACCTTGAAGAGAAGATTGGATTATCAT 1632 |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| | Sbjct 1758 AAACAGTTATCCCCGGAAATGTGAAAATTTCTAACCTTGAAGAGAAGATTGGAGTATCTT 1817 Query 1633 TTGATGA-TCCTAACATTGATCTTATAGAAAAAGAATCTGTTCATGAGTTTGTGAAGAAA 1691 ||||||| ||| |||||||| ||| | ||||||||||| ||||||||||||||||| ||| Sbjct 1818 TTGATGATTCC-AACATTGAACTTGTCGAAAAAGAATCCGTTCATGAGTTTGTGAAAAAA 1876 Query 1692 GTTCTTGAAGCTTCAAGATTGAATTGGACTAATCTTATGGCAAGGTGCAACGAAGACACA 1751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1877 GTTCTTGAAGCTTCAAGATTGAATTGGACTAATCTTATGGCAAGGTGCAACGAAGAAACA 1936 Query 1752 TCACTACTCGATGAATTCTCACACGGTAGTCACAACGACCAGCTTCTTCTTGTTCTTGAT 1811 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1937 TCGCTACTCGATGAATTCTCACACGGTAATCACAACGACCAGCTTCTTCTTGTTCTTGAT 1996 Query 1812 TACACCGACGAGATTCTCCGCGAGATTTACCGTCAAGACATCAAGTTTTGGCCTTTCTCG 1871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1997 TACACCGACGAGATTCTCCGCGAGATTTACCGTCAAGACATCAAGTTTTGGCCTTTCTCG 2056 Query 1872 CCATCGAAGAGCTCGAGAGTCCTCAATCTAGAATCATCCCTTAGAGAAGATGATCTGATT 1931 |||||||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||| Sbjct 2057 CCATCGAAGAGCTCTAGAGTCGTCAATCTACAATCATCCCTTAGAGAAGAAGATCTGATT 2116 Query 1932 CACGAGACGATGAGACATTTTGACTGGAGTTTACTCTGCTCTGACTCTCCTACAAGATCA 1991 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2117 CACGAGACGATGAGACATTTTGACTGGAGTTTACTCTGCTCCGACTCTCCTACAAGATCA 2176 Query 1992 TTGGATCAGATCATTGAAACTGATCTAATAAAGCCATGTCTTTGGTTGGATTTTGGTGGT 2051 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2177 TTGGATCAGATCATTGAAACTGATATAATAAAGCCATGTCTTTGGTTGGATTTTGGTGGT 2236 Query 2052 GAATCTGAAGGTGTTGTGTCTGATATTGTGGAAAAGATTCAGCAACAATTGGTGCTTGAG 2111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2237 GAATCTGAAGGTGTTGTGTCTGATATTGTGGAAAAGATTCAGCAACAATTGGTGCTTGAG 2296 Query 2112 ATCTCTCATGAGCTAAGAACAATGCAGAGAAGCATATTATGTCGATTAATCTGAATCTCT 2171 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 2297 ATCTCTCATGAGCTAAGAACAATGCAGAGGAGCATATTATGTCGATTAATCTGAATTTCT 2356 Query 2172 TCGGAGATATTC-AACtttttttttGTCTGTATAAAAAAGTTTATAATTTGAGAATCTAC 2230 ||||| |||||| ||| ||||||||||||||||||||| ||||| ||||||||||||| | Sbjct 2357 TCGGATATATTCCAACATTTTTTTTGTCTGTATAAAAATGTTTAAAATTTGAGAATCTTC 2416 Query 2231 TCTTCATT-TT-T-AGTTATCTAAATT-AAGAAAGATTCGATCT 2270 |||||||| || | ||||||||||||| || ||||||||||||| Sbjct 2417 TCTTCATTATTATTAGTTATCTAAATTTAA-AAAGATTCGATCT 2459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85474509780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5