BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63670.1
Length=2270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474984 jgi|Araly1|474984|fgenesh2_kg.2__114__AT1G63670.2 3459 0.0
> Ahg474984 jgi|Araly1|474984|fgenesh2_kg.2__114__AT1G63670.2
Length=2459
Score = 3459 bits (1873), Expect = 0.0
Identities = 2138/2264 (94%), Gaps = 26/2264 (1%)
Strand=Plus/Plus
Query 25 GGTCTTTGAGAATCGGTTTTACTAGATTGAAGACGAGAGTTTTGAATGATTGGTGAA--T 82
|||||||||||| || |||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 204 GGTCTTTGAGAAACGATTTTACTAAATTGGAGACGAGAGTTTTGAATGATTGGTGAATTT 263
Query 83 -TTGTTGATCATCAATGGAGAAGAAGAGATCACCAAGAAGTAGTAAGAGTCCTGGACCTG 141
||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 264 GTTGTTGATCATCAATGGAGAAGAAGCGATCACCGAGAAGTAGCAAGAGTCCTGGACCTG 323
Query 142 CAATTTTCCCTAAAAGCCCTCTTGTCTACGAGAGTTATAAGTCTGGTTGTGGTTGGAAAT 201
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 324 CAATTTTCCCTAAAAGCCCTCTTGTCTACGAGAATTATAAGTCTGGTTGTGGTTGGAAAC 383
Query 202 TGATAAAGTTCTTCGATTTCGGTCATGTCAAATCTGGTAATAAGAGACTTGGTTCAGAGA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TGATAAAGTTCTTCGATTTCGGTCATGTCAAATCTGGTAATAAGAGACTTGGTTCAGAGA 443
Query 262 AGAAGAAATTCGTCAGAGATTCTGCTGGTAATGTTTATACTAAAAGTCAGCTTGATTTGC 321
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 444 AGAAGAAATTCATCAGAGATTCTGCTGGTAATGTTTATACTAAAAGCCAGCTTGATTTGC 503
Query 322 TTAAGAAGCTTCATGAGAAGTGTCAGTGTAATGATCGGATTGTGGAAGAAGAGAGATCAT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 504 TTAAGAAGCTTCATGAGAAGTGTCAGTGTAATGATCGGATTGTGGAAGAAGAGAGTTCAT 563
Query 382 GTAAGCCTAAAACAAGGAGAAGATCTTTGAGTTCTGATAGAGAACTTGAGAAGTATGAAT 441
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 564 GTAAACCTAAAACAAGGAGAAGATCTTTGAGTTCTGAAAGAGAACTTGAGAAGTATGAAT 623
Query 442 CTAAACCTGTTCAGGGATTGCTAGAGAGAGAGATAAGAAGGATCAAGAATCTAAAGGATG 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 624 CTAAACCTGTTCAGGGATTGCTAGAGAGAGAGATAAGAAGGATCAAGAATCTAAAGGAGG 683
Query 502 AAACTTGTGATGTCCCGGATAAACAAAAGCAATCTTCGTTGAGTGAAATT--G-AG---A 555
||||||| |||| ||| ||||| |||||||||||||| |||||||||||| | || |
Sbjct 684 AAACTTGCGATGACCCTGATAAGCAAAAGCAATCTTCTTTGAGTGAAATTGAGAAGACAA 743
Query 556 ATGAT-AGTGATAAGCAGATGGATATGAAGAATGGGAGAGATTGTAAGAAGAGTTCAGAG 614
||||| ||| |||| || || ||| |||||| |||||||||||||||||||||| |||||
Sbjct 744 ATGATAAGT-ATAATCAAATAGATCTGAAGAGTGGGAGAGATTGTAAGAAGAGTGCAGAG 802
Query 615 ATTAACCTTCAAGCTTGTGTGAATGAAGCTGCTGAAACCTTTATCTGTTCAAAGGCAGAA 674
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 803 ATTAACCTTCAAGCTTGTGTGAATGAAGCTGCTGAAACATTTATTTGTTCCAAGGCGGAG 862
Query 675 GAGAAGGGGAAAGATCGGTCTAAGCAGTTCATGGAGGCGTTAGATATTCTAAGTTCGAAC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GAGAAGGGGAAAGATCGGTCTAAGCAGTTCATGGAGGCGTTAGATATTCTAAGTTCGAAC 922
Query 735 AAAGAATTGTTCATTACACTCTTACAAGATCCTCATTCATTTTCGGCGaaaaaaaGCT-T 793
||||||||||||||||||||||||||||||||| ||||| ||| || ||||||| |
Sbjct 923 AAAGAATTGTTCATTACACTCTTACAAGATCCTAATTCA--TTC-TCG-AAAAAAGGTCA 978
Query 794 AGACTTGGAGGGATCTAAGGTAAAAGAACCGCGTGATAAATCTCCATCAATGGCTGATGA 853
||||||||| |||| ||||||||| |||||||| ||||| |||||||||| |||||||||
Sbjct 979 AGACTTGGAAGGATGTAAGGTAAAGGAACCGCGGGATAACTCTCCATCAAGGGCTGATGA 1038
Query 854 TTTGGATAGCATTGTTCTCTTGAAGCCTAGATTATCAAGCTCGGTTGATGATAAAGTGTA 913
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1039 TTTGGATAACATTGTTCTCTTGAAGCCTAGATTATCAAGTTCGGTTGATGATAAAGTGTA 1098
Query 914 CTTGAGATTCAAACATCTAGCCAAGAAGTTGAAACTTGTTGTTGGATCTAACAAAGACAG 973
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||
Sbjct 1099 CTTGAGATTCAAACATCTGGCCAAGAAGTTGAAGCTCGTTGTTGGATCTAACAAAGATAG 1158
Query 974 CAATCACGCAGAAAACAAACCCGAAGGTAGCAGTAGAGGTAGAGAAATCGAGGCTGCTGC 1033
||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||
Sbjct 1159 CAATCACGCAGAAAACAAACCTGAAGGTAGCGGTAAAGGTAGAGAAACCGAGGCTGCTGC 1218
Query 1034 TTTTAGAACAAGTGATGTTTCTACCAGTACAGTTGGTCATAGAAGCCCGGAGTCACCGGT 1093
|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||
Sbjct 1219 TTTTAGAACAAGTGATGTTTCTACAAGTACATTTGGACATAGAAGCCCGGAGTCACCAGT 1278
Query 1094 GTTTAGGCGCAAGAAACGGGTTGAATCCGATGTTTTCAAGCTAAGTATCGAGAACGATGT 1153
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GTTTAGGCGCAAAAAACGGGTTGAATCCGATGTTTTCAAGCTAAGTATCGAGAACGATGT 1338
Query 1154 TTTGCCAAGGAGATTCATGGTGGAAAGGCAACAGGAGAGATTAAATTCTTCACCGGTTTA 1213
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1339 TTTGCCAAGGAGACTCATGGTAGAAAGGCAACATGAGAGATTAAATTCTTCACCGGTTTA 1398
Query 1214 TGAAGTTCCTTATGC-ATTGAGTAGTTTGCAGACAAAGCTCAaagaaagaagacagaagc 1272
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1399 TGAAGTTCCTTAT-CAATTGAGTAGCTTGCAGACAAAGCTCAAAGAAAGAAGACAGAAGC 1457
Query 1273 tagagaagaagagagagagCTTCAAGTTGTGGTCTTTGGACAAGAACTTCGAGGTTTTTG 1332
|||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1458 TAGAGAAGAAAAGAGAGAGCTTCAAGTTGTGGTCTTTGGACAAAAACTGCGAGGTTTTTG 1517
Query 1333 ACCCGAATCCATACAATTCTAATCTAAGGTTTCTCGAAAACAATTGTACAGGTTCTTCTG 1392
| |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 1518 ATCCGAATCCATACAATTCTAATCTAAGGTCTCTCGACGGCAATTGTACAGGTTCTGCTG 1577
Query 1393 AGTACAAAAGTCTGAGAACTCATGTAGAAGACGGATTCGTGGAAGATAGATATCTTGAGA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1578 AGTACAAAAGTCTGAGAACTCATGTAGAAGACGGATTCGTGGAAGATAGATGTCTTGAGA 1637
Query 1453 GCTCATTAGCGGAGACGAATTTGAGCCTAGAAAGACAAGACTGCAACATTCATGACCCGA 1512
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GCTCATTAGCAGAGTCGAATTCGAGCCTAGAAAGACAAGACTGCAACATTCATGACCCGA 1697
Query 1513 AACAGGAGCAGGAACAACCGAGTCCTGTCTCTGTTCTTGAAAGGATTCATTTGGAAGACG 1572
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1698 AACAGGAGCAGGAACAACCGAGTCCTGTCTCTGTTCTTGAGAGGATTCATTTGGAAGATG 1757
Query 1573 AAACAGTTATCCCCGGAAATGTTAAAATATCTAACCTTGAAGAGAAGATTGGATTATCAT 1632
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |
Sbjct 1758 AAACAGTTATCCCCGGAAATGTGAAAATTTCTAACCTTGAAGAGAAGATTGGAGTATCTT 1817
Query 1633 TTGATGA-TCCTAACATTGATCTTATAGAAAAAGAATCTGTTCATGAGTTTGTGAAGAAA 1691
||||||| ||| |||||||| ||| | ||||||||||| ||||||||||||||||| |||
Sbjct 1818 TTGATGATTCC-AACATTGAACTTGTCGAAAAAGAATCCGTTCATGAGTTTGTGAAAAAA 1876
Query 1692 GTTCTTGAAGCTTCAAGATTGAATTGGACTAATCTTATGGCAAGGTGCAACGAAGACACA 1751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1877 GTTCTTGAAGCTTCAAGATTGAATTGGACTAATCTTATGGCAAGGTGCAACGAAGAAACA 1936
Query 1752 TCACTACTCGATGAATTCTCACACGGTAGTCACAACGACCAGCTTCTTCTTGTTCTTGAT 1811
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1937 TCGCTACTCGATGAATTCTCACACGGTAATCACAACGACCAGCTTCTTCTTGTTCTTGAT 1996
Query 1812 TACACCGACGAGATTCTCCGCGAGATTTACCGTCAAGACATCAAGTTTTGGCCTTTCTCG 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 TACACCGACGAGATTCTCCGCGAGATTTACCGTCAAGACATCAAGTTTTGGCCTTTCTCG 2056
Query 1872 CCATCGAAGAGCTCGAGAGTCCTCAATCTAGAATCATCCCTTAGAGAAGATGATCTGATT 1931
|||||||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 2057 CCATCGAAGAGCTCTAGAGTCGTCAATCTACAATCATCCCTTAGAGAAGAAGATCTGATT 2116
Query 1932 CACGAGACGATGAGACATTTTGACTGGAGTTTACTCTGCTCTGACTCTCCTACAAGATCA 1991
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2117 CACGAGACGATGAGACATTTTGACTGGAGTTTACTCTGCTCCGACTCTCCTACAAGATCA 2176
Query 1992 TTGGATCAGATCATTGAAACTGATCTAATAAAGCCATGTCTTTGGTTGGATTTTGGTGGT 2051
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2177 TTGGATCAGATCATTGAAACTGATATAATAAAGCCATGTCTTTGGTTGGATTTTGGTGGT 2236
Query 2052 GAATCTGAAGGTGTTGTGTCTGATATTGTGGAAAAGATTCAGCAACAATTGGTGCTTGAG 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 GAATCTGAAGGTGTTGTGTCTGATATTGTGGAAAAGATTCAGCAACAATTGGTGCTTGAG 2296
Query 2112 ATCTCTCATGAGCTAAGAACAATGCAGAGAAGCATATTATGTCGATTAATCTGAATCTCT 2171
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2297 ATCTCTCATGAGCTAAGAACAATGCAGAGGAGCATATTATGTCGATTAATCTGAATTTCT 2356
Query 2172 TCGGAGATATTC-AACtttttttttGTCTGTATAAAAAAGTTTATAATTTGAGAATCTAC 2230
||||| |||||| ||| ||||||||||||||||||||| ||||| ||||||||||||| |
Sbjct 2357 TCGGATATATTCCAACATTTTTTTTGTCTGTATAAAAATGTTTAAAATTTGAGAATCTTC 2416
Query 2231 TCTTCATT-TT-T-AGTTATCTAAATT-AAGAAAGATTCGATCT 2270
|||||||| || | ||||||||||||| || |||||||||||||
Sbjct 2417 TCTTCATTATTATTAGTTATCTAAATTTAA-AAAGATTCGATCT 2459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85474509780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5