BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63690.2
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474982 jgi|Araly1|474982|fgenesh2_kg.2__112__AT1G63690.1 3260 0.0
> Ahg474982 jgi|Araly1|474982|fgenesh2_kg.2__112__AT1G63690.1
Length=1998
Score = 3260 bits (1765), Expect = 0.0
Identities = 1943/2024 (96%), Gaps = 32/2024 (2%)
Strand=Plus/Plus
Query 21 TCTCTTCCGTGTTTCA--c-tct-tctctctctctcgcttctctTCATTGTTTGTGTGTG 76
||| |||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 TCTATTCCGTGTTTCACTCTTCTCTCTCTCTCTCTCGCTTCTCTTCATTGTTTCTGTGTG 60
Query 77 ATTACAGCGAAGAAGAGAGAATCCTTGGAGCA-TTCCATGGATTCGCTTCGATTTCTCCG 135
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATTATAGCGAAGAAGAGAGAATCCTTGGAGCATTTCCATGGATTCGCTTCGATTTCTCCG 120
Query 136 GATTCTTCTTCTATCATCTTCGATTTTACTCTTATCTCTCCGTTCTACAGTCACCGCCGG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTCTTCTTCTATCATCTTCGATTTTACTCTTATCTCTCCGTTCTACAGTCACCGCCGG 180
Query 196 TGATATTGTTCATCAAGACAATTTAGCTCCGAAGAAACCAGGTTGCGAGAATGACTTCGT 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGATATTGTTCATCAAGACAATTTAGCTCCGAAGAAACCAGGTTGCGAGAATGACTTCGT 240
Query 256 TTTGGTGAAAGTTCAAACGTGGATTGATGGTGTTGAGAATGAGGAGTTTGTGGGGGTTGG 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGGTGAAAGTTCAAACGTGGATTGATGGTGTTGAGAATGAGGAGTTTGTGGGGGTTGG 300
Query 316 CGCTAGATTTGGGAAGCGGATAGTTTCCAAGGAGAAGAATGCAAACCAGACTCACCTTGT 375
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GGCTAGATTTGGGAGGCGGATAGTTTCCAAGGAGAAGAACGCAAACCAGACTCACCTTGT 360
Query 376 TTTTGCAAATCCTCGTGATTCTTGTACACCGCTCAAGAACAAGCTTTCTGGAGATGTTGT 435
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTTGCTAATCCTCGTGATTCTTGTACACCGCTCAAGAACAAGCTTTCTGGAGATGTTGT 420
Query 436 TATTGTGGAACGGGGCAACTGTCGGTTCACAGCAAAGGCGAATAATGCAGAAGCTGCTGG 495
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATTGTGGAACGTGGCAACTGTCGGTTCACAGCAAAGGCGAATAATGCAGAAGCTGCTGG 480
Query 496 TGCCTCTGCTCTGCTCATCATCAATAATCAGAAAGAACTTTACAAAATGGTTTGTGAACC 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCCTCTGCTCTGCTCATCATCAATAATCAGAAAGAACTTTACAAAATGGTTTGTGAACC 540
Query 556 GGATGAAACTGATTTAGATATACAGATTCCTGCCGTCATGCTCCCGCAAGATGCTGGTGC 615
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 GGATGAAACGGATTTAGATATACAGATTCCTGCCGTCATGCTCCCTCAAGATGCTGGTGC 600
Query 616 ATCCTTGCAAAAGATGCTAGCCAACAGTTCTAAAGTGTCGGCGCAGCTTTACTCCCCAAG 675
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 ATCCTTGCAAAAGATGCTAGCCAACAGTTCAAAAGTGTCGGCGCAGCTTTACTCCCCAAG 660
Query 676 ACGACCAGCTGTTGACGTAGCTGAAGTCTTTTTGTGGTTAATGGCAATTGGTACCATTTT 735
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 ACGACCAGCTGTTGACGTAGCTGAAGTCTTTTTGTGGTTAATGGCTATTGGTACCATTTT 720
Query 736 ATGTGCATCTTATTGGTCTGCATGGAGTGCCCGAGAAGCAGCTATTGAACATGATAAGCT 795
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 GTGTGCATCTTATTGGTCTGCATGGAGTGCCCGAGAGGCAGCTATTGAACATGATAAGCT 780
Query 796 ACTGAAGGATGCTATAGATGAAATCCCTAACACAAATGATGGGGGTAGTGGTGTTGTAGA 855
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 781 ACTGAAGGATGCAATAGATGAAATCCCTTACACAAATGATGGGGGCAGTGGTGTTGTAGA 840
Query 856 GATCAATTCTATTTCAGCTAtttttttCGTAGTTCTTGCTTCGGGATTCCTGGTGATTCT 915
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GATCAATACTATTTCAGCTATTTTTTTCGTAGTTCTTGCTTCGGGATTCCTGGTGATTCT 900
Query 916 TTACAAGCTTATGTCTTATTGGTTTGTGGAGCTTCTTGTGGTCGTTTTCTGCATTGGTGG 975
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 TTACAAGCTTATGTCTTATTGGTTTGTGGAGCTTCTTGTGGTTGTTTTCTGCATTGGTGG 960
Query 976 TGTTGAGGGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAGATGGTTCCAACGTGCTGC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGTTGAGGGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAGATGGTTCCAACGTGCTGC 1020
Query 1036 AGATACTTATGTAAAAGTCCCTTTCCTTGGACCTATCTCTTACCTCACTCTTGCAGTTTC 1095
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 AGATGCTTATGTAAAAGTCCCTTTCCTTGGACCTATCTCTTACCTGACTCTTGCAGTTTC 1080
Query 1096 TCCTTTCTGCATTGTCTTTGCTGTTCTATGGGCTGTATACCGAGTTCACTCCTTTGCTTG 1155
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1081 TCCTTTCTGCATTGTCTTTGCTGTTCTCTGGGCTGTTTACCGAGTTCACTCCTTTGCTTG 1140
Query 1156 GATTGGCCAAGATGTTCTTGGTATCGCATTGATCATAACTGTACTACAGATTGTTCATGT 1215
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1141 GATTGGCCAAGATGTTCTTGGTATCGCATTGATCATCACTGTACTACAGATTGTTCATGT 1200
Query 1216 CCCAAATCTTAAGGTCGGGACAGTTCTTCTCAGCTGTGCCTTCTTGTACGATATCTTCTG 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CCCAAATCTTAAGGTCGGGACAGTTCTTCTCAGCTGTGCCTTCTTGTACGATATCTTCTG 1260
Query 1276 GGTGTTTGTCTCCAAGAAGTTGTTCCACGAAAGCGTAATGATTGTCGTAACTCGAGGTGA 1335
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1261 GGTGTTTGTCTCCAAGAAGTTGTTCCACGAAAGCGTAATGATTGTCGTAGCTCGTGGTGA 1320
Query 1336 TAAGAGTGGAGAAGATGGCATCCCGATGCTACTGAAGATTCCGCGGATGTTCGATCCGTG 1395
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1321 TAAGAGTGGAGAAGATGGCATCCCGATGCTACTGAAGATTCCGCGCATGTTTGATCCGTG 1380
Query 1396 GGGAGGCTACAGCATTATTGGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATT 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GGGAGGCTACAGCATTATTGGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATT 1440
Query 1456 TGCTCTCAGATATGACTGGCTAGCTAACAAGACTCTTAGAACCGGCTATTTTATATGGGC 1515
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TGCTCTCAGATATGACTGGTTAGCTAACAAGACTCTTAGAACCGGCTATTTTATATGGGC 1500
Query 1516 AATGGTTGCCTATGGATTAGGTCTTTTAATTACTTACGTGGCTTTGAACCTAATGGATGG 1575
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1501 AATGGTTGCCTACGGATTAGGTCTTTTACTTACTTACGTGGCTTTAAACCTAATGGATGG 1560
Query 1576 ACACGGCCAACCAGCATTGCTATACATTGTCCCTTTCACACTTGGAACCATGTTAACGCT 1635
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1561 ACACGGCCAACCAGCATTGCTCTACATTGTCCCTTTCACTCTTGGAACAATGTTAACGCT 1620
Query 1636 GGCTCGAAAAAGAGACGATCTTTGGATTCTATGGACCAAAGGAGAACCAGAAAGAGCTTG 1695
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1621 GGCTCGAAAACGAGGCGATCTTTGGATTCTATGGACAAAAGGAGAACCAGAAAGGGCTTG 1680
Query 1696 TCCTCACCATGTCCGGCTTGAACAGTGTTCTGAGAAATGAGACGACCTGACCAAAAAATG 1755
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1681 TCCTCACCATGTCCGGCTTGAACCGTGTTCTGAGAAATGAGACGACCTGACCAAAAAATG 1740
Query 1756 CAACACTGAGATATTTACAGAGaaaaaaaaaaaaGGCTTTGGGGGTTGTAACGTAAGTTG 1815
||||||||||||||||||||||||||||| | | | |||||||| ||
Sbjct 1741 GAACACTGAGATATTTACAGAGAAAAAAAA-------T--G----T---AACGTAAGCTG 1784
Query 1816 TAAGATTAATTTTCTCTTCAAAT-CCtttttttAATCTTAAGTTGTTTATGTTACTTACT 1874
||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||
Sbjct 1785 TAAGATTAATTTTCTCTTCAAATTCCTTTTT--AATCTTATGTTATTTATGTTACTTACT 1842
Query 1875 TACATCATCATTATTGAAGAAGAATCCATGATCGTCGTTCTTTGTCTATATATGGTTTGT 1934
|||| |||||||||||||||||||||||||||||| | || ||||||||||| |||||
Sbjct 1843 TACACCATCATTATTGAAGAAGAATCCATGATCGT--T-CTCTGTCTATATATAATTTGT 1899
Query 1935 TTCTTTTGTAAGAAAGTGTTAAATGTGTATAAAACGTAGACAACTTTCTAAGCTCTCATA 1994
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1900 TTCTTTTGTAAAAAAGTGTTAAATGTGTATAAA-CGTAGACAACTTTCTAAGCTCTCATA 1958
Query 1995 ATTAATTGTGTGGACGATTTTGTAATTTAAATAATAATATATAT 2038
||| |||||||||||||||||||||||||||||||||||||
Sbjct 1959 ATT----GTGTGGACGATTTTGTAATTTAAATAATAATATATAT 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77056565635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5