BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63700.1
Length=3275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474980 jgi|Araly1|474980|fgenesh2_kg.2__110__AT1G63700.1 4920 0.0
Ahg474488 jgi|Araly1|474488|fgenesh2_kg.1__4442__AT1G53570.2 154 4e-36
> Ahg474980 jgi|Araly1|474980|fgenesh2_kg.2__110__AT1G63700.1
Length=2979
Score = 4920 bits (2664), Expect = 0.0
Identities = 2878/2983 (96%), Gaps = 8/2983 (0%)
Strand=Plus/Plus
Query 27 TTTAAAAGAGTGATAGTGTGAGTGAGTGTGCCTCTTGGTTTGT-GGGAAGAAGATCATGC 85
||| ||||||||||| || ||||||||||||||||| |||| ||||||||||||||||
Sbjct 1 TTTGAAAGAGTGATA--GT--GTGAGTGTGCCTCTTGGGTTGTGGGGAAGAAGATCATGC 56
Query 86 CTTGGTGGAGTAAATCAAAAGATGaaaaaaaGAAAACTAATAAGGAGAGTATCATTGATG 145
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CTTGGTGGAGTAAATCCAAAGATGAAAAAAAGAAAACTAATAAGGAGAGTATCATTGATG 116
Query 146 CGTTTAATCGGAAACTGGGATTCGCATCTGAGGATAGGTCTAGTGGAAGATCAAGAAAAT 205
| ||||| |||||| ||||||| ||||||||||||||||||||||| | || |||||||
Sbjct 117 CCTTTAACCGGAAATTGGGATTTGCATCTGAGGATAGGTCTAGTGGTCGGTCGAGAAAAT 176
Query 206 CAAGACGACGACGTGATGAGATTGTGTCTGAAAGAGGAGCTATATCTCGATTACCATCAA 265
||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 177 CAAGAAGACGACGTGATGAAATTGTGTCAGAAAGAGGAGCTATATCTCGATTACCATCAA 236
Query 266 GATCTCCCTCTCCTTCTACTCGGGTTTCACGCTGTCAGAGTTTTGCAGAAAGATCTCCTG 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GATCTCCCTCTCCTTCTACTCGGGTTTCACGCTGTCAGAGTTTTGCAGAAAGATCTCCTG 296
Query 326 CTGTACCTCTTCCTCGTCCTATTGTCCGTCCTCATGTAACCAGTACTGATTCAGGAATGA 385
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 297 CTGTACCTCTTCCTCGTCCTATTGTCCGTCCTCCTGTAACCAGTACTGATTCGGGAATGA 356
Query 386 ATGGATCACAGAGACCAGGTTTAGATGCAAATTTGAAGCCGTCATGGTTGCCACTTCCAA 445
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 357 ATGGATCACAGAGACCAGGTTTAGATGCTAATTTGAAGCCATCATGGTTGCCACTTCCAA 416
Query 446 AGCCCCATGGTGCTACAAGCATACCTGATAATACCGGTGCTGAGCCTGATTTTGCCACTG 505
|||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 417 AGCCCCATGGTGCTCCAAGCATACCTGATAATACTGGTGCTGAGGCTGATTTTGCCACTG 476
Query 506 CTTCTGTGTCTAGTGGAAGTTCTGTGGGTGACATTCCATCTGATTCTCTTCTCAGTCCAT 565
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 477 CTTCTGTGTCTAGTGGAAGTTCTGTCGGTGACAATCCATCTGATTCTCTTCTCAGTCCAT 536
Query 566 TGGCGTCTGATTGTGAAAATGGGAACCGAACACCAGTAAACATATCTTCGAGGGATCAGT 625
|||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct 537 TGGCTTCTGATTGTGAAAATGGGAACCGAACAGCAGTAAACATTTCTTCAAGGGATCAAC 596
Query 626 CAATGCATAGTAACAAAAACTCAGCTGAGATGTTTAAGCCAGTCCCTAATAAAAATAGGA 685
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 597 CAATGCATAGTAATAAAAACTCAGCTGAGATGTTCAAGCCAGTCCCAAATAAAAATAGGA 656
Query 686 TTCTGTCTGCATCTCCTAGGCGGAGACCTCTGGGAACTCATGTGAAGAATCTACAAATCC 745
|||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 657 TTCTATCGGCATCTCCTAGGCGAAGACCTCTGGGAACTCATGTGAAGAATTTACAAATCC 716
Query 746 CCCAACGAGATTTAGTGCTATGCAGTGCTCCAGATAGTTTGTTGTCTAGTCCTTCCAGGA 805
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 CGCAACGAGATTTAGTGCTATGCAGTGCTCCAGAGAGTTTGTTGTCTAGTCCTTCCAGGA 776
Query 806 GTCCAATGAGATCCTTTATTCCAGATCAAGTCTCAAACCATGGGTTGTTGATTAGTAAAC 865
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 777 GTCCAATGAGATCCTTTGTTCCAGATCAAGTCTCGAACCATGGGTTGTTGATTAGTAAAC 836
Query 866 CATATTCAGATGTTTCCTTGCTTGGATCTGGACAGTGCTCAAGCCCCGGTTCAGGTTACA 925
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 837 CATATTCAGATGTTTCCTTACTTGGATCTGGACAGTGCTCAAGCCCAGGTTCAGGTTACA 896
Query 926 ACTCAGGTAACAATTCCATTGGTGGAGATATGGCTACTCAGCTGTTTTGGCCTCAAAGCA 985
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 897 ACTCAGGTAACAATTCCATTGGTGGAGATATGGCTACCCAGCTGTTTTGGCCTCAGAGCA 956
Query 986 GGTGTAGCCCTGAATGTTCCCCTGTGCCTAGTCCAAGAATGACAAGCCCTGGTCCTAGCT 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGTGTAGCCCTGAATGTTCCCCTGTGCCTAGTCCAAGAATGACAAGCCCTGGTCCTAGCT 1016
Query 1046 CTAGAATACAGAGTGGTGCTGTTACACCTCTTCATCCTCGAGCTGGAGGGTCAACTACTG 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTAGAATACAGAGTGGTGCTGTTACACCTCTTCATCCTCGAGCTGGAGGGTCAACTACTG 1076
Query 1106 GGTCTCCTACTAGAAGACTTGATGATAACAGACAGCAAAGCCATCGTCTGCCTCTCCCGC 1165
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1077 GGTCTCCTACTAGAAGACTTGATGATAACAGACAGCAAAGCCACCGTCTGCCTCTCCCCC 1136
Query 1166 CGTTATTAATCTCTAATACTTGTCCGTTTTCACCCACATATTCAGCAGCGACATCTCCGT 1225
| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1137 CATTATTAATCTCTAATACTTGTCCGTTTTCCCCCACATATTCAGCAGCAACATCTCCAT 1196
Query 1226 CTGTCCCCCGAAGTCCGGCAAGGGCAGAGGCTACGGTTAGCCCTGGATCGCGATGGAAAA 1285
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1197 CTGTCCCCCGAAGTCCAGCAAGGGCAGAGGCTACCGTAAGCCCTGGATCGCGATGGAAAA 1256
Query 1286 AAGGGAGATTGCTGGGGATGGGAAGTTTTGGACATGTGTATCTTGGCTTTAACAGTGAAA 1345
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1257 AAGGGAGATTGCTGGGGATGGGCAGTTTTGGACATGTGTATCTTGGCTTTAACAGCGAAA 1316
Query 1346 GTGGGGAGATGTGTGCCATGAAAGAGGTTACTCTATGCTCAGATGATCCTAAGTCAAGGG 1405
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTGGTGAGATGTGTGCCATGAAAGAGGTTACTCTATGCTCAGATGATCCTAAGTCAAGGG 1376
Query 1406 AGAGTGCACAACAATTGGGGCAAGAAATTTCAGTTCTAAGCCGTTTACGACACCAAAATA 1465
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1377 AGAGTGCACAACAATTGGGGCAAGAAATTTCTGTTCTAAGCCGTTTACGACACCAAAATA 1436
Query 1466 TAGTGCAGTATTATGGCTCTGAAACCGTCGATGACAAGCTGTATATATATCTGGAGTATG 1525
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1437 TAGTGCAGTATTATGGCTCTGAAACCGTAGATGACAAGCTGTATATATATCTGGAGTATG 1496
Query 1526 TCTCCGGTGGTTCGATCTATAAACTTCTTCAAGAGTATGGACAATTTGGTGAGAATGCCA 1585
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TCTCCGGTGGTTCGATATATAAACTTCTTCAAGAGTATGGACAATTTGGTGAGAATGCCA 1556
Query 1586 TTCGTAACTACACACAACAAATTTTATCAGGGCTCGCATATTTGCACGCCAAAAATACTG 1645
| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TCCGAAACTACACGCAGCAAATTTTATCAGGGCTCGCATATTTGCACGCCAAAAATACTG 1616
Query 1646 TTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCTCATGGACGAGTAAAAGTTG 1705
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1617 TTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCCCATGGACGAGTAAAAGTGG 1676
Query 1706 CTGATTTTGGGATGGCAAAACATATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGA 1765
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1677 CTGATTTTGGGATGGCAAAACATATTACTGCTCAATCTGGTCCTCTATCATTCAAGGGGA 1736
Query 1766 GCCCATATTGGATGGCACCTGAGGTGATAAAGAATTCAAATGGCAGTAACCTTGCGGTCG 1825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1737 GCCCATATTGGATGGCACCTGAGGTGATAAAGAATTCAAATGGCAGTAACCTTGCGGTTG 1796
Query 1826 ACATATGGAGTCTTGGATGTACTGTTTTAGAAATGGCTACAACGAAACCTCCATGGAGCC 1885
|||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 1797 ACATATGGAGTCTTGGATGTACCGTTCTAGAAATGGCTACAACAAAACCTCCATGGAGCC 1856
Query 1886 AGTATGAAGGGGTTCCTGCTATGTTCAAGATTGGAAACAGCAAGGAGCTTCCAGATATCC 1945
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1857 AGTATGAGGGGGTTCCTGCTATGTTCAAGATTGGAAACAGCAAGGAGCTTCCAGATATTC 1916
Query 1946 CTGATCATTTATCTGAAGAGGGGAAGGATTTTGTAAGAAAATGCCTACAAAGAAACCCCG 2005
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1917 CTGATCATTTATCTGAAGAGGGGAAGGATTTTGTAAGAAAATGCCTACAGAGAAACCCTT 1976
Query 2006 CAAATCGTCCTACAGCTGCTCAGCTTTTGGATCATGCTTTTGTAAGAAATGTGATGCCGA 2065
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1977 CAAATCGTCCTACAGCTGCTCAGCTTTTGGATCACGCTTTTGTAAGAAATGTGATGCCGA 2036
Query 2066 TGGAAAGGCCTATTGTGAGTGGCGAGCCTGCAGAAGCCATGAATGTAGCTTCGAGCACCA 2125
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 TGGAAAGGCCTATTGTGTGTGGCGAGCCTGCAGAAGCCATGAATGTAGCTTCGAGCACCA 2096
Query 2126 TGAGATCACTGGACATTGGACATGCAAGGAGTCTTCCGTGCTTAGACTCGGAAGATGCAA 2185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TGAGATCACTGGACATTGGACATGCAAGGAGTCTTCCGTGCTTAGACTCGGAAGATGCAA 2156
Query 2186 CCAATTACCAGCAGAAAGGATTAAAACATGGCTCGGGATTCAGTATATCCCAATCTCCTA 2245
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2157 CCAGTTACCAGCAGAAAGGATTAAAACCTGGCTCGGGATTCAGTATATCCCAATCTCCTA 2216
Query 2246 GGAACATGTCATGCCCGATTTCACCAGTCGGTAGTCCAATCTTTCACTCGCATTCACCAC 2305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 GGAACATGTCATGCCCGATTTCACCAGTCGGTAGTCCAATCTTTCACTCGCATTCACCAC 2276
Query 2306 ACATTAGCGGAAGAAGATCTCCATCCCCAATATCTAGTCCCCACGCTCTCTCTGGTTCAT 2365
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2277 ATATTAGCGGAAGAAGATCTCCATCCCCAATATCTAGTCCCCATGCTCTCTCCGGTTCAT 2336
Query 2366 CAACACCTTTAACTGGGTGTGGTGGAGCCATCCCGTTCCATCACCAAAGACAAACTACAG 2425
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2337 CAACACCTTTAACCGGGTGTGGTGGAGCCATCCCGTTCCATCACCAAAGACAGACTACAG 2396
Query 2426 TTAACTTCTTGCATGAAGGCATAGGATCAAGCAGAAGCCCGGGAAGTGGCGGAAATTTCT 2485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 TTAACTTCTTGCATGAAGGCATAGGATCAAGCAGAAGCCCGGGAAGTGGCGGAAATTTCT 2456
Query 2486 ACACCAACAGTTTCTTTCAGGAGCCTAGTAGGCAGCAAGATCGGTCGCGGAGTAGTCCAA 2545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 ACACCAACAGTTTCTTTCAGGAGCCTAGTAGGCAGCAAGATCGGTCGCGGAGTAGTCCAA 2516
Query 2546 GGACTCCTCCTCATGTATTTTGGGACAACAACGGATCGATCCAGCCAGGCTATAATTGGA 2605
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GGACGCCTCCTCATGTATTTTGGGACAACAACGGATCGATCCAGCCAGGCTATAATTGGA 2576
Query 2606 ACAAGGACAACCAGCCAGTCCTATCTGATCATGTGTCCCAACAGCTCTTAAGTGAGCATC 2665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 ACAAGGACAACCAGCCAGTCCTATCTGATCATGTGTCCCAACAGCTCTTAAGTGAGCATC 2636
Query 2666 TGAAACTGAAGTCCCTCGACCTGAGACCCGGTTTTTCAACTCCCGGATCAACAAACAGAG 2725
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2637 TGAAACTGAAGTCCCTCGACCTGAGACCCGGTTTTTCAACTCCCGGTTCGACAAACAGAG 2696
Query 2726 GACCCTAACCCGTTCGAGTCAAATGATTCGACACCAATGACAGAACCATAAAACCCAGTG 2785
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697 GACCCTAACCCGGTCGAGTCAAATGATTCGACACCAATGACAGAACCATAAAACCCAGTG 2756
Query 2786 GaaaaaaaCATCAAAACAAGTAGCTGCAGAAACTCCTCCAGGATCTCGGAATTGCAACAC 2845
|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2757 GAAACAAACATCAAAACAAATAGCTGCAGAAACTCCTCCAGGATCTCAGAATTGCAACAC 2816
Query 2846 AGCCTGAAGGGT-CAGGATCTTGAGGTTTAGGATCGGGGTTAGGGTTACTGAGCCGCGTC 2904
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2817 AGCCTGAAGGGTTCAGGATCTCGAGGTTTAGGATCGGGGTTAGGGTTACTGAGCCGCGTC 2876
Query 2905 TCAAAACCCTGAACCATTGGCTAATATCATGAA-TGAGGATTCGttttttt-CGTCTTTG 2962
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 2877 TCAAAACCCTGAACCATTGGCTAATATCAAGAAATGAGGATTCGTTTTTTTTCGTCTTTG 2936
Query 2963 GAAAATCTGAAGAGctctttgtcttgtctctctctctttttct 3005
|||||||||||||||||||| ||| |||||||||| ||| |||
Sbjct 2937 GAAAATCTGAAGAGCTCTTTATCTCGTCTCTCTCTGTTTCTCT 2979
> Ahg474488 jgi|Araly1|474488|fgenesh2_kg.1__4442__AT1G53570.2
Length=2278
Score = 154 bits (83), Expect = 4e-36
Identities = 392/536 (73%), Gaps = 42/536 (8%)
Strand=Plus/Plus
Query 1517 TGGAGTATGTCTCCGGTGGTTCGATCTATAAACTTCTTCAAGAGTATGGACAATTT-GGT 1575
|||||||||| || |||||||| ||| ||||||| ||| |||| ||||| ||| |
Sbjct 985 TGGAGTATGTGTCAGGTGGTTCAATCCATAAACTACTTAAAGAATATGG-TTCTTTCACT 1043
Query 1576 GAGA-ATGCCATTCGTAACTACACACAACAAATTTTATCAGGGCTCGCATATTTGCACGC 1634
|| | || || | |||||||| | || ||| | | ||||| || ||||| || |
Sbjct 1044 GA-ACCTGTTATCCAAAACTACACGCGGCAGATTCTCGCTGGGCTTGCCTATTTACATG- 1101
Query 1635 CAA-AAATACTGTTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCTCATGGAC 1693
|| |||||| || ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1102 GAAGAAATACAGTACATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGT- 1160
Query 1694 GAG-TAAAAGTTG-CTGATTTTGGGATGGCAAAACATATTA-CTGCTCAAT-CTGGTC-- 1747
|| | || |||| | || ||||||||||| | |||| | | | || | | || |
Sbjct 1161 GAAATCAA-GTTGGCAGACTTTGGGATGGCCAGACATGT-AGCAGC-CTTTTCTACTATG 1217
Query 1748 CTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAGGT-GATAAAGAATTCAAA- 1805
|||| | ||||| ||||| || || ||||||||||| ||||| | | | || ||||
Sbjct 1218 CTTTCT--TTCAAAGGGAGTCCTTACTGGATGGCACCCGAGGTTG-TGATGAGC-CAAAA 1273
Query 1806 TGGCAGTA-AC-CTTGCGGTCGACATATGGAGTCTTGGAT-GTACTGTTTTAGAAATGGC 1862
||| || || | ||| ||||| || |||||| |||| | ||||| || | ||||||||
Sbjct 1274 TGGT--TACACTCATGCAGTCGATATCTGGAGT-TTGGGTTGTACTATTCTCGAAATGGC 1330
Query 1863 TACAACGAAA-CCTCCATGGAGCCAGTATGAAGGGGTTCCTGCTATGTTCAAGATTGGAA 1921
||| | ||| || || |||||||||| |||||||||| |||| || ||||| || ||||
Sbjct 1331 AACATC-AAAGCCACCTTGGAGCCAGTTTGAAGGGGTTGCTGCGATTTTCAAAATCGGAA 1389
Query 1922 ACAGCAAGGAGCTTCCAG-ATATCCCTGATCAT-TTATCTGAA-GAGGGGAAGGATTTTG 1978
|||| || || | || | | || |||||||| || || || || | ||| |||||
Sbjct 1390 ACAGTAAAGA-CACCCCGGAAATACCTGATCACCTT-TCA-AACGATGCAAAGAATTTTA 1446
Query 1979 TAAGAAAATGCCTACAAAGAAACCCCG-CAA-ATCGTCCTACAGCT-GCTCAGCTT 2031
|||| || || ||| |||| || | || | |||||||||||| | |||||||
Sbjct 1447 TAAGGCTTTGTCTGCAACGAAATCC-GACAGTA-CGTCCTACAGCTTG-TCAGCTT 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123610997104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5