BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63710.1 Length=1765 Score E Sequences producing significant alignments: (Bits) Value Ahg907042 jgi|Araly1|907042|Al_scaffold_0002_123 2488 0.0 Ahg935562 jgi|Araly1|935562|scaffold_403550.1 542 4e-153 > Ahg907042 jgi|Araly1|907042|Al_scaffold_0002_123 Length=1650 Score = 2488 bits (1347), Expect = 0.0 Identities = 1554/1652 (94%), Gaps = 21/1652 (1%) Strand=Plus/Plus Query 12 ATGGATGGATCAACGGCTGCGATCATCCTTACCCTCATCGTAACCTACATTATATGGTTC 71 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGGATGGATCAACGGCTGTGATCATCCTTACCCTCATCGTAACCTACCTTATATGGTTC 60 Query 72 GTTTCTTTACGTCGTTCATATAAAGGTCCACGTGTCTGGCCCTTAGTGGGCAGTCTTCCA 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTTTCTTTACGTCGTTCATATAAAGGTCCACGTGTCTGGCCCTTAGTGGGCAGTCTTCCA 120 Query 132 GCACTCATAACAAATGCTCACCGCATGCACGACTTCATCGCCGATAACCTCCGCATGTGC 191 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCACTCATCACAAACGCTCACCGCATGCACGACTTCATCGCCGATAACCTCCGCATGTGC 180 Query 192 GGCGGTACGTACCAAACGTGCATATTCCCGATCCCGTTCTTGGCTAAGAAACAAGGTCAC 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGCGGTACGTACCAAACGTGCATATTCCCGATCCCGTTCTTGGCTAAGAAACAAGGTCAC 240 Query 252 GTGACTGTCACGTGTGACCCAAAGAATCTGGAGCATATCTTGAAGACCCGGTTCGATAAT 311 |||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||| Sbjct 241 GTGACTGTTACGTGTGACCCGAAGAATCTGGAGCATATTTTGAAGTCCCGGTTCGATAAT 300 Query 312 TACCCCAAGGGTCCTAGCTGGCAATCAGTCTTCCACGATCTGTTAGGAGATGGGATCTTT 371 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 301 TACCCGAAGGGTCCTAGCTGGCAATCAGTCTTCCACGATCTATTAGGAGATGGGATCTTT 360 Query 372 AATTCAGATGGTGACACATGGCGGTTTCAACGTAAGACCGCTGCATTGGAGTTCACTACA 431 ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |||||| Sbjct 361 AATTCAGATGGTGACACGTGGCGGTTTCAGCGTAAGACGGCTGCATTGGACTTTACTACA 420 Query 432 CGTACCCTTCGCCAAGCCATGGCTCGTTGGGTTGATCGAGCCATCAAGAACCGTCTCGTG 491 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CGTACGCTTCGCCAAGCCATGGCTCGTTGGGTTGATCGAGCCATCAAGAACCGTCTCGTG 480 Query 492 CCGATTCTTGAATCAGCTAGGAGTCGAGCCGAGCCGATTGATCTTCAAGATGTTCTTTTA 551 |||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||| Sbjct 481 CCGATTCTTGAATCGGCTATGAGTCGAGCTGAGCCGATCGATCTTCAAGATGTTCTTTTA 540 Query 552 CGGCTCACTTTCGATAACATTTGCGGCTTAACATTTGGTAAAGATCCACGGACACTCTCG 611 |||||||| ||||||||||||||||||||||| || || ||||||||||| |||||||| Sbjct 541 CGGCTCACATTCGATAACATTTGCGGCTTAACCTTCGGCAAAGATCCACGAACACTCTCA 600 Query 612 CCGGAGTTTCCTGAGAACGGATTCGCGGTGGCTTTTGATGGAGCCACCGAAGCCACTCTT 671 ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 601 CCGGACTTTCCCGAGAATGGATTCGCGGTGGCTTTTGATGGAGCCACCGAAGCCACACTT 660 Query 672 CAACGGTTTATCATGCCTGAGTTTATTTGGAAGATCAGAAAATGGCTTCGGCTCGGCTTG 731 ||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||| Sbjct 661 CAACGGTTTATCATGCCGGAATTTATTTGGAAGATGAGAAAATGGCTACGGCTCGGCTTG 720 Query 732 GAAGATGATATGAGCCGAAGCATCAGCCACGTGGATAATTACTTATCAGAGATCATAAAT 791 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 GAGGATGATATGAGCCGAAGCATCAGCCACGTGGATAATTACTTATCAGAGATCATTAAT 780 Query 792 ACACGTAAGCTCGAATT-GCT-AGGTCAGCAACAAGATGAATCCCGCCATGATGATCTAT 849 ||||||||||||||||| | | || ||| |||||||||| ||||||||| || ||||||| Sbjct 781 ACACGTAAGCTCGAATTAG-TGAG-TCAACAACAAGATGGATCCCGCCACGACGATCTAT 838 Query 850 TGTCACGGTTCATGAAGAAAAAAGAATCCTACTCGGATAAATATCTTAAATACGTGGCGT 909 ||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| Sbjct 839 TGTCACGGTTCATGAAGAAAAAAGAGTCTTACTCGGATAAATATCTTAAATACGCGGCGT 898 Query 910 TAAATTTCATCCTAGCTGGACGTGACACGTCATCGGTTGCTATGAGTTGGTTCTTCTGGT 969 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 899 TAAATTTCATCCTAGCTGGACGTGACACGTCATCGGTAGCTATGAGTTGGTTCTTCTGGT 958 Query 970 TGGTTAGTCTTAACCCACGAGTCGAAGAAAAAATCATAAACGAGATCTGCACCATTCTGA 1029 |||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |||||| Sbjct 959 TGGTCAGTCTTAACCCTCGAGTCGAAGAAAAAATCATAACCGAGATCTGCACCGTTCTGA 1018 Query 1030 TCAAGACACGTGACACCAATGTGTCGAAGTGGACCGACGAGCCGTTGACTTTCGATGAAA 1089 |||||||||||| |||||||||| ||||||||||||| ||||| || |||||||| |||| Sbjct 1019 TCAAGACACGTGGCACCAATGTGACGAAGTGGACCGATGAGCCATTAACTTTCGACGAAA 1078 Query 1090 TTGACCAGTTGGTCTACTTAAAAGCGGCATTGTCCGAAACATTGAGGCTATATCCATCGG 1149 ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1079 TTGACCAGTTGGTATACTTGAAAGCGGCATTGTCGGAAACATTGAGGCTATATCCATCGG 1138 Query 1150 TACCAGAAGATTCAAAATTTGTTGTTGCCAACGATGTTTTACCTGACGGGACATTTGTTC 1209 | || |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| Sbjct 1139 TGCCGGAAGATTCAAAATTCGTTGTTGCCAACGATGTTTTACCGGACGGAACATTTGTTC 1198 Query 1210 CATCGGGATCAAACGTTACATATTCGATATATTCGGTTGGGCGTATGAAATTCATTTGGG 1269 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CATCCGGATCAAACGTTACATATTCGATATATTCGGTTGGGCGTATGAAATTCATTTGGG 1258 Query 1270 GTGAAGATTGTCTCGAGTTTAAACCGGAAAGATGGTTAGAGGAAAGCCGGGACGAAAAAT 1329 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || Sbjct 1259 GTGAAGATTGTCTCGAGTTTAAACCGGAAAGATGGTTAGAGGAAAACCGGGACGAGATAT 1318 Query 1330 GTAACCAATACAAATTCGTAGCGTTCAATGCCGGTCCACGGATTTGTCTAGGCAAAGACT 1389 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1319 GTAACCAATACAAATTCGTAGCATTCAATGCCGGTCCACGGATTTGTCTAGGCAAAGACT 1378 Query 1390 TGGCTTATTTGCAGATGAAATCAATTACTGCTTCGATTTTGCTCCGGCATCGGCTTACGG 1449 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1379 TAGCTTACTTGCAGATGAAATCAATTACTGCTTCGATTTTGCTCCGGCATCGGCTGACGG 1438 Query 1450 TGGCTCCGGGACATCGAGTGGAGCAGAAGATGTCATTGACGTTGTTCATGAAGTTTGGTC 1509 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1439 TGGCTCCGGGACATCGAGTGGAGCAGAAGATGTCCTTGACGTTGTTCATGAAGTTTGGTC 1498 Query 1510 TTAAAATGGATGTGCATAAAAGGGATTTGACGTTGCCGGTGGAGAAAGTGGTTAATGAGA 1569 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1499 TTAAAATGGATGTGCATAGAAGGGATTTGACGTTGCCGGTGGAGAAAGTGGTGAATGAGA 1558 Query 1570 TGAGGAA--A--A-AGT-G----A---G--A--TTATTGGGACTAATGATGGTAACTATG 1612 ||||||| | | ||| | | | | |||||||||||||||||||||| |||| Sbjct 1559 TGAGGAATTACGAGAGTTGTGGCAAAAGTGAGATTATTGGGACTAATGATGGTAATTATG 1618 Query 1613 ATGAAGTTAAATTGGTCACCGGTTTGGCATAA 1644 |||||||||||||||| ||||||||||||| Sbjct 1619 GTGAAGTTAAATTGGTCGTCGGTTTGGCATAA 1650 > Ahg935562 jgi|Araly1|935562|scaffold_403550.1 Length=1619 Score = 542 bits (293), Expect = 4e-153 Identities = 1108/1485 (75%), Gaps = 121/1485 (8%) Strand=Plus/Plus Query 92 TAAAGGTCCACGTGTCTGGCCCTTAGTGGGCAGTCTTCCAGCACTCAT-AACAAATGCTC 150 ||||||||||||||| |||||| || |||| ||||| || | || || | || ||| Sbjct 101 TAAAGGTCCACGTGTTTGGCCCATATTGGGTAGTCTCCCTGGTCTAATCGAGAACTGC-G 159 Query 151 ACCGCATGCACGACTTCATCGCCGATAACCTCC--GCATGTGCGGCGGTACGTACCAAAC 208 | || |||||||||| ||| |||| ||||||| || | ||| ||||||||| || || Sbjct 160 AGCGAATGCACGACTGGATCTCCGACAACCTCCGTGC-T-TGCTCCGGTACGTATCAGAC 217 Query 209 GTGCATATTC-CCGATCCCG-TTCTTGGCTAAGAAACAAGGTCACGTGACTGTCACGTGT 266 ||||| | | || || ||| ||| | |||||||||||||||| ||||||||||||||| Sbjct 218 ATGCATCTGCGCC-ATTCCGTTTC-TAGCTAAGAAACAAGGTCTCGTGACTGTCACGTGC 275 Query 267 GACCCAAAG-AATCTGGAGCATA-TCTTGAAGACCCGGTTCGATAATTACCCC-AAGGGT 323 || || ||| || || ||||||| || | |||| || || ||||||| |||| || ||| Sbjct 276 GATCC-AAGAAACCTCGAGCATATTC-TCAAGAATCGCTTTGATAATT-CCCCTAAAGGT 332 Query 324 CCTAGC-TGGCAATCAGTCTTCCACGATC-TGTTAGGAGATGGGATCTTTAATTCAGATG 381 || | | |||||| | || ||||| |||| | || || | ||||||||||| || || | Sbjct 333 CC-AACGTGGCAAGCCGTTTTCCATGATCTTCTT-GGTCAAGGGATCTTTAACTCCGACG 390 Query 382 GTGACACATGGCGGTTTCAACGTAAGACCGCTGCATTGGAGTTCACTACACGTACCCTTC 441 ||||||| |||| ||||| || |||||||| || ||||||||||| ||| | || || | Sbjct 391 GTGACACGTGGCTTTTTCAGCGCAAGACCGCCGCTTTGGAGTTCACCACAAGGACACTCC 450 Query 442 GCCAAGCCATGGCTCGTTGGGTTGATCGAGCCATCAAG--AACCGTCTCGTGCCGATTCT 499 | ||||||||||||||||||||| || |||| |||||| | || | |||| ||||| Sbjct 451 GTCAAGCCATGGCTCGTTGGGTTAATAGAGCGATCAAGCTTA-GGT-TTTTGCCTATTCT 508 Query 500 TGAATCAGCTAGGAGTCGAGC-C-GAGCCGATTGATCTTCAAGATGTT-CTT-TTACGGC 555 |||| | ||| || ||| || | ||||||||||||||||||||| || ||| || |||| Sbjct 509 TGAAACGGCTCGG-CTCG-GCTCTGAGCCGATTGATCTTCAAGAT-TTGCTTCTT-CGGC 564 Query 556 TCAC-TTTCGATAACATTTGCGGCTTAACATTT-GGTAAAGATCCACGGACACTCT-CGC 612 | || ||| ||||| || |||||||| || ||| || ||||| || ||||| | | | | Sbjct 565 TTACATTT-GATAATATCTGCGGCTTGAC-TTTCGGGAAAGACCCGCGGAC-TTGTGCAC 621 Query 613 CGGAGT-TTCCTGAGAACGGATTCGCGGTGGCTTTTGATGGAGCCACCGAAGCCACTCTT 671 ||| || |||| | |||| ||||||||| ||||| ||| |||||||||| || | || Sbjct 622 CGG-GTCTTCCGGTGAACACATTCGCGGTAGCTTTCGATCGAGCCACCGAGGCTTCCCTA 680 Query 672 CAACGGTTTATCA-TGCCTGAGTTTATT-TGGAAGATC-AGAAAATGGCTTCGGCTCGGC 728 ||| ||||||| | |||| ||| |||| |||||| || || | ||||| || |||||| Sbjct 681 CAAAGGTTTAT-ATTGCCGGAG-ATATTATGGAAGTTCAAG-AGGTGGCTCCGACTCGGC 737 Query 729 TTGGAAGAT--GATATGAGC-CGAAGCATCAG-CCACGTGGATAATTACTTATCAGAGAT 784 || |||| | | | ||| | ||||| | | ||| || |||||||| || || ||||| Sbjct 738 TTAGAAG-TCAGCT-TGA-CAAGAAGC-TTGGTCCAGGTAGATAATTATTTGTCTGAGAT 793 Query 785 CATAAATACACGTAAGCTCGAATTGCTAG-GTCAGCAACAA-GAT--GAATCCCGCCATG 840 || | |||||||||| ||| || | | |||||| | || ||| ||| | ||| | Sbjct 794 TATTACGACACGTAAGCAAGAAATGAT-GAGTCAGC-ATAACGATGGGAA--ACACCACG 849 Query 841 ATGATCTATTGTCACGGTTCATGAAGAAAAAAGAATCCTACTCGGATAAATA-TCTTAAA 899 ||||||| || || |||||||| ||||| || ||||| ||||| || | | || | Sbjct 850 ATGATCTCTTATCGCGGTTCATCAAGAAGAAGGAATCTTACTCCGA-CGAGACCCTCCAG 908 Query 900 TACGTGGCGTTAAATTTCATCCTAGCTGGACGTGACACGTCATCGGTTGCTATGAGTTGG 959 |||||| | || |||||||||||||||||||||||||||||||| || |||| ||| Sbjct 909 CGCGTGGCACTCAACTTCATCCTAGCTGGACGTGACACGTCATCGGTCGCGCTGAGCTGG 968 Query 960 TTCTTCTGGTTGGTTA-GTCTTAACCC-ACGAGTCGAAGAAAAAATCATAAACGAGATCT 1017 |||||||||||| ||| | | |||| || | | || || | |||| | ||||||| Sbjct 969 TTCTTCTGGTTGATTACG-CAGCACCCGACTA-TAGAGGATATAATCCTCCGGGAGATCT 1026 Query 1018 GCACCATTCTGATCAAGACACGTGAC-ACCAATGTGTCGA-AGTGGACCGACGAGCCGTT 1075 ||||| |||||||| ||||||||| | | | ||| || | ||||||||||||||| Sbjct 1027 GCACCGTTCTGATCGAGACACGTGGCGATGAC-GTGGCGTTA-TGGACCGACGAGCCG-- 1082 Query 1076 GACTTTCGA-TGAA-AT-T-GACCAGTT-GGTCTA-CTTAAAAGCGGCATTGTCCGAAAC 1129 |||||| |||| | | || | ||| ||| || || || ||||| || || || || Sbjct 1083 --CTTTCGTGTGAAGAGCTAGATC-GTTTGGTTTATCTCAAG-GCGGCGTTATCGGAGAC 1138 Query 1130 AT-TGAGGCTATATCCATCGGTACCAGAAGATTCAAAATTTGTTGTTGCCA-ACGATGTT 1187 | ||||||| ||||| ||||| || || ||||| ||| | || | | ||||||| Sbjct 1139 -TCTGAGGCTTTATCCTTCGGTGCCGGAGGATTCGAAACGCGCCGT-GAAAGACGATGTG 1196 Query 1188 TTACCTGACGGGACATTTGTTCCATCGGGATCAAACG-TTACATATTCGATATATTCGGT 1246 || || |||||||||||||| || ||||||| || |||| |||||||| || || | Sbjct 1197 TTGCCGGACGGGACATTTGTGCCGGCGGGATCTT-CGGTTACTTATTCGATTTACTCTGC 1255 Query 1247 TGGGCGTATGAAATTC-ATTTGGGGTGAAGATTGTCTCG-AGTTTAAACCGGAAAGATGG 1304 ||| | ||||||| | | |||||| || ||||| || | | || |||||||| |||||| Sbjct 1256 GGGGAGGATGAAAT-CGACTTGGGGAGAGGATTG-CTTGGAATTCAAACCGGAGAGATGG 1313 Query 1305 -T-TAG-A---GGAAAGCCGGGACGAA--A--AATG-TAA-CCAATACAAATTCGTAGCG 1352 | | | | ||| | |||| || | ||| | | ||| | |||||||| ||| Sbjct 1314 ATCTCGCAATCGGACGGT-GGGA-GATTCATCAATCATGATCCATTT-AAATTCGTGGCG 1370 Query 1353 TTCAATGCCGGTCC-ACGGATTTGTCTAGGCAAAGA-CTTGGCTTATTTGCAGATGAAAT 1410 |||||||| || || | |||| |||||||| || || || ||||||| | || ||||||| Sbjct 1371 TTCAATGCTGGCCCTA-GGATCTGTCTAGGTAAGGATCT-GGCTTATCTACAAATGAAAT 1428 Query 1411 CAATTACTGCTTCGATTTTGCTCCGGCATCGGCTT-ACGGTGGCTC-CGGGACATCGAG- 1467 ||||| | || || ||||||| || || || || ||||||| | |||| ||| || Sbjct 1429 CAATTGCGGCGGCGGTTTTGCTTCGTCACCGA-TTGACGGTGG-TGACGGGGCATA-AGG 1485 Query 1468 TGGAGCAGAAGATGTCATTGACGT-TGTTCATGAAGTTTGGTCTT 1511 |||||||||||||||| || || | | |||||||||| |||||| Sbjct 1486 TGGAGCAGAAGATGTCGTTAAC-TCTATTCATGAAGTACGGTCTT 1529 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66238936055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5