BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63710.1
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907042 jgi|Araly1|907042|Al_scaffold_0002_123 2488 0.0
Ahg935562 jgi|Araly1|935562|scaffold_403550.1 542 4e-153
> Ahg907042 jgi|Araly1|907042|Al_scaffold_0002_123
Length=1650
Score = 2488 bits (1347), Expect = 0.0
Identities = 1554/1652 (94%), Gaps = 21/1652 (1%)
Strand=Plus/Plus
Query 12 ATGGATGGATCAACGGCTGCGATCATCCTTACCCTCATCGTAACCTACATTATATGGTTC 71
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGATGGATCAACGGCTGTGATCATCCTTACCCTCATCGTAACCTACCTTATATGGTTC 60
Query 72 GTTTCTTTACGTCGTTCATATAAAGGTCCACGTGTCTGGCCCTTAGTGGGCAGTCTTCCA 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTTCTTTACGTCGTTCATATAAAGGTCCACGTGTCTGGCCCTTAGTGGGCAGTCTTCCA 120
Query 132 GCACTCATAACAAATGCTCACCGCATGCACGACTTCATCGCCGATAACCTCCGCATGTGC 191
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCACTCATCACAAACGCTCACCGCATGCACGACTTCATCGCCGATAACCTCCGCATGTGC 180
Query 192 GGCGGTACGTACCAAACGTGCATATTCCCGATCCCGTTCTTGGCTAAGAAACAAGGTCAC 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCGGTACGTACCAAACGTGCATATTCCCGATCCCGTTCTTGGCTAAGAAACAAGGTCAC 240
Query 252 GTGACTGTCACGTGTGACCCAAAGAATCTGGAGCATATCTTGAAGACCCGGTTCGATAAT 311
|||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct 241 GTGACTGTTACGTGTGACCCGAAGAATCTGGAGCATATTTTGAAGTCCCGGTTCGATAAT 300
Query 312 TACCCCAAGGGTCCTAGCTGGCAATCAGTCTTCCACGATCTGTTAGGAGATGGGATCTTT 371
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TACCCGAAGGGTCCTAGCTGGCAATCAGTCTTCCACGATCTATTAGGAGATGGGATCTTT 360
Query 372 AATTCAGATGGTGACACATGGCGGTTTCAACGTAAGACCGCTGCATTGGAGTTCACTACA 431
||||||||||||||||| ||||||||||| |||||||| ||||||||||| || ||||||
Sbjct 361 AATTCAGATGGTGACACGTGGCGGTTTCAGCGTAAGACGGCTGCATTGGACTTTACTACA 420
Query 432 CGTACCCTTCGCCAAGCCATGGCTCGTTGGGTTGATCGAGCCATCAAGAACCGTCTCGTG 491
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGTACGCTTCGCCAAGCCATGGCTCGTTGGGTTGATCGAGCCATCAAGAACCGTCTCGTG 480
Query 492 CCGATTCTTGAATCAGCTAGGAGTCGAGCCGAGCCGATTGATCTTCAAGATGTTCTTTTA 551
|||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 481 CCGATTCTTGAATCGGCTATGAGTCGAGCTGAGCCGATCGATCTTCAAGATGTTCTTTTA 540
Query 552 CGGCTCACTTTCGATAACATTTGCGGCTTAACATTTGGTAAAGATCCACGGACACTCTCG 611
|||||||| ||||||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 541 CGGCTCACATTCGATAACATTTGCGGCTTAACCTTCGGCAAAGATCCACGAACACTCTCA 600
Query 612 CCGGAGTTTCCTGAGAACGGATTCGCGGTGGCTTTTGATGGAGCCACCGAAGCCACTCTT 671
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 CCGGACTTTCCCGAGAATGGATTCGCGGTGGCTTTTGATGGAGCCACCGAAGCCACACTT 660
Query 672 CAACGGTTTATCATGCCTGAGTTTATTTGGAAGATCAGAAAATGGCTTCGGCTCGGCTTG 731
||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||
Sbjct 661 CAACGGTTTATCATGCCGGAATTTATTTGGAAGATGAGAAAATGGCTACGGCTCGGCTTG 720
Query 732 GAAGATGATATGAGCCGAAGCATCAGCCACGTGGATAATTACTTATCAGAGATCATAAAT 791
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GAGGATGATATGAGCCGAAGCATCAGCCACGTGGATAATTACTTATCAGAGATCATTAAT 780
Query 792 ACACGTAAGCTCGAATT-GCT-AGGTCAGCAACAAGATGAATCCCGCCATGATGATCTAT 849
||||||||||||||||| | | || ||| |||||||||| ||||||||| || |||||||
Sbjct 781 ACACGTAAGCTCGAATTAG-TGAG-TCAACAACAAGATGGATCCCGCCACGACGATCTAT 838
Query 850 TGTCACGGTTCATGAAGAAAAAAGAATCCTACTCGGATAAATATCTTAAATACGTGGCGT 909
||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 839 TGTCACGGTTCATGAAGAAAAAAGAGTCTTACTCGGATAAATATCTTAAATACGCGGCGT 898
Query 910 TAAATTTCATCCTAGCTGGACGTGACACGTCATCGGTTGCTATGAGTTGGTTCTTCTGGT 969
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 TAAATTTCATCCTAGCTGGACGTGACACGTCATCGGTAGCTATGAGTTGGTTCTTCTGGT 958
Query 970 TGGTTAGTCTTAACCCACGAGTCGAAGAAAAAATCATAAACGAGATCTGCACCATTCTGA 1029
|||| ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 959 TGGTCAGTCTTAACCCTCGAGTCGAAGAAAAAATCATAACCGAGATCTGCACCGTTCTGA 1018
Query 1030 TCAAGACACGTGACACCAATGTGTCGAAGTGGACCGACGAGCCGTTGACTTTCGATGAAA 1089
|||||||||||| |||||||||| ||||||||||||| ||||| || |||||||| ||||
Sbjct 1019 TCAAGACACGTGGCACCAATGTGACGAAGTGGACCGATGAGCCATTAACTTTCGACGAAA 1078
Query 1090 TTGACCAGTTGGTCTACTTAAAAGCGGCATTGTCCGAAACATTGAGGCTATATCCATCGG 1149
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 TTGACCAGTTGGTATACTTGAAAGCGGCATTGTCGGAAACATTGAGGCTATATCCATCGG 1138
Query 1150 TACCAGAAGATTCAAAATTTGTTGTTGCCAACGATGTTTTACCTGACGGGACATTTGTTC 1209
| || |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1139 TGCCGGAAGATTCAAAATTCGTTGTTGCCAACGATGTTTTACCGGACGGAACATTTGTTC 1198
Query 1210 CATCGGGATCAAACGTTACATATTCGATATATTCGGTTGGGCGTATGAAATTCATTTGGG 1269
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CATCCGGATCAAACGTTACATATTCGATATATTCGGTTGGGCGTATGAAATTCATTTGGG 1258
Query 1270 GTGAAGATTGTCTCGAGTTTAAACCGGAAAGATGGTTAGAGGAAAGCCGGGACGAAAAAT 1329
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 1259 GTGAAGATTGTCTCGAGTTTAAACCGGAAAGATGGTTAGAGGAAAACCGGGACGAGATAT 1318
Query 1330 GTAACCAATACAAATTCGTAGCGTTCAATGCCGGTCCACGGATTTGTCTAGGCAAAGACT 1389
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 GTAACCAATACAAATTCGTAGCATTCAATGCCGGTCCACGGATTTGTCTAGGCAAAGACT 1378
Query 1390 TGGCTTATTTGCAGATGAAATCAATTACTGCTTCGATTTTGCTCCGGCATCGGCTTACGG 1449
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1379 TAGCTTACTTGCAGATGAAATCAATTACTGCTTCGATTTTGCTCCGGCATCGGCTGACGG 1438
Query 1450 TGGCTCCGGGACATCGAGTGGAGCAGAAGATGTCATTGACGTTGTTCATGAAGTTTGGTC 1509
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1439 TGGCTCCGGGACATCGAGTGGAGCAGAAGATGTCCTTGACGTTGTTCATGAAGTTTGGTC 1498
Query 1510 TTAAAATGGATGTGCATAAAAGGGATTTGACGTTGCCGGTGGAGAAAGTGGTTAATGAGA 1569
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1499 TTAAAATGGATGTGCATAGAAGGGATTTGACGTTGCCGGTGGAGAAAGTGGTGAATGAGA 1558
Query 1570 TGAGGAA--A--A-AGT-G----A---G--A--TTATTGGGACTAATGATGGTAACTATG 1612
||||||| | | ||| | | | | |||||||||||||||||||||| ||||
Sbjct 1559 TGAGGAATTACGAGAGTTGTGGCAAAAGTGAGATTATTGGGACTAATGATGGTAATTATG 1618
Query 1613 ATGAAGTTAAATTGGTCACCGGTTTGGCATAA 1644
|||||||||||||||| |||||||||||||
Sbjct 1619 GTGAAGTTAAATTGGTCGTCGGTTTGGCATAA 1650
> Ahg935562 jgi|Araly1|935562|scaffold_403550.1
Length=1619
Score = 542 bits (293), Expect = 4e-153
Identities = 1108/1485 (75%), Gaps = 121/1485 (8%)
Strand=Plus/Plus
Query 92 TAAAGGTCCACGTGTCTGGCCCTTAGTGGGCAGTCTTCCAGCACTCAT-AACAAATGCTC 150
||||||||||||||| |||||| || |||| ||||| || | || || | || |||
Sbjct 101 TAAAGGTCCACGTGTTTGGCCCATATTGGGTAGTCTCCCTGGTCTAATCGAGAACTGC-G 159
Query 151 ACCGCATGCACGACTTCATCGCCGATAACCTCC--GCATGTGCGGCGGTACGTACCAAAC 208
| || |||||||||| ||| |||| ||||||| || | ||| ||||||||| || ||
Sbjct 160 AGCGAATGCACGACTGGATCTCCGACAACCTCCGTGC-T-TGCTCCGGTACGTATCAGAC 217
Query 209 GTGCATATTC-CCGATCCCG-TTCTTGGCTAAGAAACAAGGTCACGTGACTGTCACGTGT 266
||||| | | || || ||| ||| | |||||||||||||||| |||||||||||||||
Sbjct 218 ATGCATCTGCGCC-ATTCCGTTTC-TAGCTAAGAAACAAGGTCTCGTGACTGTCACGTGC 275
Query 267 GACCCAAAG-AATCTGGAGCATA-TCTTGAAGACCCGGTTCGATAATTACCCC-AAGGGT 323
|| || ||| || || ||||||| || | |||| || || ||||||| |||| || |||
Sbjct 276 GATCC-AAGAAACCTCGAGCATATTC-TCAAGAATCGCTTTGATAATT-CCCCTAAAGGT 332
Query 324 CCTAGC-TGGCAATCAGTCTTCCACGATC-TGTTAGGAGATGGGATCTTTAATTCAGATG 381
|| | | |||||| | || ||||| |||| | || || | ||||||||||| || || |
Sbjct 333 CC-AACGTGGCAAGCCGTTTTCCATGATCTTCTT-GGTCAAGGGATCTTTAACTCCGACG 390
Query 382 GTGACACATGGCGGTTTCAACGTAAGACCGCTGCATTGGAGTTCACTACACGTACCCTTC 441
||||||| |||| ||||| || |||||||| || ||||||||||| ||| | || || |
Sbjct 391 GTGACACGTGGCTTTTTCAGCGCAAGACCGCCGCTTTGGAGTTCACCACAAGGACACTCC 450
Query 442 GCCAAGCCATGGCTCGTTGGGTTGATCGAGCCATCAAG--AACCGTCTCGTGCCGATTCT 499
| ||||||||||||||||||||| || |||| |||||| | || | |||| |||||
Sbjct 451 GTCAAGCCATGGCTCGTTGGGTTAATAGAGCGATCAAGCTTA-GGT-TTTTGCCTATTCT 508
Query 500 TGAATCAGCTAGGAGTCGAGC-C-GAGCCGATTGATCTTCAAGATGTT-CTT-TTACGGC 555
|||| | ||| || ||| || | ||||||||||||||||||||| || ||| || ||||
Sbjct 509 TGAAACGGCTCGG-CTCG-GCTCTGAGCCGATTGATCTTCAAGAT-TTGCTTCTT-CGGC 564
Query 556 TCAC-TTTCGATAACATTTGCGGCTTAACATTT-GGTAAAGATCCACGGACACTCT-CGC 612
| || ||| ||||| || |||||||| || ||| || ||||| || ||||| | | | |
Sbjct 565 TTACATTT-GATAATATCTGCGGCTTGAC-TTTCGGGAAAGACCCGCGGAC-TTGTGCAC 621
Query 613 CGGAGT-TTCCTGAGAACGGATTCGCGGTGGCTTTTGATGGAGCCACCGAAGCCACTCTT 671
||| || |||| | |||| ||||||||| ||||| ||| |||||||||| || | ||
Sbjct 622 CGG-GTCTTCCGGTGAACACATTCGCGGTAGCTTTCGATCGAGCCACCGAGGCTTCCCTA 680
Query 672 CAACGGTTTATCA-TGCCTGAGTTTATT-TGGAAGATC-AGAAAATGGCTTCGGCTCGGC 728
||| ||||||| | |||| ||| |||| |||||| || || | ||||| || ||||||
Sbjct 681 CAAAGGTTTAT-ATTGCCGGAG-ATATTATGGAAGTTCAAG-AGGTGGCTCCGACTCGGC 737
Query 729 TTGGAAGAT--GATATGAGC-CGAAGCATCAG-CCACGTGGATAATTACTTATCAGAGAT 784
|| |||| | | | ||| | ||||| | | ||| || |||||||| || || |||||
Sbjct 738 TTAGAAG-TCAGCT-TGA-CAAGAAGC-TTGGTCCAGGTAGATAATTATTTGTCTGAGAT 793
Query 785 CATAAATACACGTAAGCTCGAATTGCTAG-GTCAGCAACAA-GAT--GAATCCCGCCATG 840
|| | |||||||||| ||| || | | |||||| | || ||| ||| | ||| |
Sbjct 794 TATTACGACACGTAAGCAAGAAATGAT-GAGTCAGC-ATAACGATGGGAA--ACACCACG 849
Query 841 ATGATCTATTGTCACGGTTCATGAAGAAAAAAGAATCCTACTCGGATAAATA-TCTTAAA 899
||||||| || || |||||||| ||||| || ||||| ||||| || | | || |
Sbjct 850 ATGATCTCTTATCGCGGTTCATCAAGAAGAAGGAATCTTACTCCGA-CGAGACCCTCCAG 908
Query 900 TACGTGGCGTTAAATTTCATCCTAGCTGGACGTGACACGTCATCGGTTGCTATGAGTTGG 959
|||||| | || |||||||||||||||||||||||||||||||| || |||| |||
Sbjct 909 CGCGTGGCACTCAACTTCATCCTAGCTGGACGTGACACGTCATCGGTCGCGCTGAGCTGG 968
Query 960 TTCTTCTGGTTGGTTA-GTCTTAACCC-ACGAGTCGAAGAAAAAATCATAAACGAGATCT 1017
|||||||||||| ||| | | |||| || | | || || | |||| | |||||||
Sbjct 969 TTCTTCTGGTTGATTACG-CAGCACCCGACTA-TAGAGGATATAATCCTCCGGGAGATCT 1026
Query 1018 GCACCATTCTGATCAAGACACGTGAC-ACCAATGTGTCGA-AGTGGACCGACGAGCCGTT 1075
||||| |||||||| ||||||||| | | | ||| || | |||||||||||||||
Sbjct 1027 GCACCGTTCTGATCGAGACACGTGGCGATGAC-GTGGCGTTA-TGGACCGACGAGCCG-- 1082
Query 1076 GACTTTCGA-TGAA-AT-T-GACCAGTT-GGTCTA-CTTAAAAGCGGCATTGTCCGAAAC 1129
|||||| |||| | | || | ||| ||| || || || ||||| || || || ||
Sbjct 1083 --CTTTCGTGTGAAGAGCTAGATC-GTTTGGTTTATCTCAAG-GCGGCGTTATCGGAGAC 1138
Query 1130 AT-TGAGGCTATATCCATCGGTACCAGAAGATTCAAAATTTGTTGTTGCCA-ACGATGTT 1187
| ||||||| ||||| ||||| || || ||||| ||| | || | | |||||||
Sbjct 1139 -TCTGAGGCTTTATCCTTCGGTGCCGGAGGATTCGAAACGCGCCGT-GAAAGACGATGTG 1196
Query 1188 TTACCTGACGGGACATTTGTTCCATCGGGATCAAACG-TTACATATTCGATATATTCGGT 1246
|| || |||||||||||||| || ||||||| || |||| |||||||| || || |
Sbjct 1197 TTGCCGGACGGGACATTTGTGCCGGCGGGATCTT-CGGTTACTTATTCGATTTACTCTGC 1255
Query 1247 TGGGCGTATGAAATTC-ATTTGGGGTGAAGATTGTCTCG-AGTTTAAACCGGAAAGATGG 1304
||| | ||||||| | | |||||| || ||||| || | | || |||||||| ||||||
Sbjct 1256 GGGGAGGATGAAAT-CGACTTGGGGAGAGGATTG-CTTGGAATTCAAACCGGAGAGATGG 1313
Query 1305 -T-TAG-A---GGAAAGCCGGGACGAA--A--AATG-TAA-CCAATACAAATTCGTAGCG 1352
| | | | ||| | |||| || | ||| | | ||| | |||||||| |||
Sbjct 1314 ATCTCGCAATCGGACGGT-GGGA-GATTCATCAATCATGATCCATTT-AAATTCGTGGCG 1370
Query 1353 TTCAATGCCGGTCC-ACGGATTTGTCTAGGCAAAGA-CTTGGCTTATTTGCAGATGAAAT 1410
|||||||| || || | |||| |||||||| || || || ||||||| | || |||||||
Sbjct 1371 TTCAATGCTGGCCCTA-GGATCTGTCTAGGTAAGGATCT-GGCTTATCTACAAATGAAAT 1428
Query 1411 CAATTACTGCTTCGATTTTGCTCCGGCATCGGCTT-ACGGTGGCTC-CGGGACATCGAG- 1467
||||| | || || ||||||| || || || || ||||||| | |||| ||| ||
Sbjct 1429 CAATTGCGGCGGCGGTTTTGCTTCGTCACCGA-TTGACGGTGG-TGACGGGGCATA-AGG 1485
Query 1468 TGGAGCAGAAGATGTCATTGACGT-TGTTCATGAAGTTTGGTCTT 1511
|||||||||||||||| || || | | |||||||||| ||||||
Sbjct 1486 TGGAGCAGAAGATGTCGTTAAC-TCTATTCATGAAGTACGGTCTT 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66238936055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5