BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63720.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474978 jgi|Araly1|474978|fgenesh2_kg.2__108__AT1G63720.1 2093 0.0
> Ahg474978 jgi|Araly1|474978|fgenesh2_kg.2__108__AT1G63720.1
Length=1533
Score = 2093 bits (1133), Expect = 0.0
Identities = 1419/1548 (92%), Gaps = 55/1548 (4%)
Strand=Plus/Plus
Query 17 GGGTTACGTGTCGCTTTATTTGTAAAACGATTTTTCAGATTTTGATTGTTAAAGAAGCTT 76
|||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||
Sbjct 1 GGGTTACGTGTCGCTTTATTTGTAAATGGATTTTTCAGAGTTTGATTGTTGAAGAAG-TT 59
Query 77 TCTGTGTATTATTTTTGATTTTTACTAGAGAAAAACTCGAATGCTCTG-----TTTTGTT 131
| ||||| |||| |||||||||||| |||||||||||||| |||||| |||||||
Sbjct 60 T-TGTGT-CTATTATTGATTTTTACTTGAGAAAAACTCGAACGCTCTGTTTTTTTTTGTT 117
Query 132 CTCTCGAGAAAATTCTCAGACTCAGAGAAAAGTAAAAACAGAGAAGAAAGATGAGAAGCG 191
||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 118 TTCTCGAGAAAATTATCAGACTCAGAGAAAATTAAAAACACAGAAGAAAGATGAGAAGCG 177
Query 192 GTGCTAATGGAAACAACGTTTTCGATACTATAAACGCAGCTGCTTCTGCTATTGCTTCTT 251
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 GTGCTAGTGGAAACAACGTTTTCGATACTATAAACGCAGCTGCTTCTGCTATTGCTTCCT 237
Query 252 CTGATGATCGTCTTCATCAATCTTCTCCGATTCATAAGAAGA-GAAAATGGTGGAATCGA 310
||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 238 CTGATGATCGTCTTCATCAATCTTCTCCGATTCCGAAGAA-ACGAAAATGGTGGAATCGA 296
Query 311 TGGAGTCTGTTGAAATGTTTCGGATCTTCAAGACAAAGAAAACGAATAGGAAACTCGGTT 370
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 297 TGGAGTCTGTTGAAATGTTTCAGATCTTCAAGACAAAGGAAACGAATAGGAAACTCGGTT 356
Query 371 CTTGTTCCTGAACCGGTATCAATGTCTTCTTCAAATTCAACAACATCAAATTCCGGTTAT 430
|||||||||||||||||||||| | |||||||||| |||||||||||| |||||||
Sbjct 357 CTTGTTCCTGAACCGGTATCAA--T-ATCTTCAAATT---CAACATCAAATTTCGGTTAT 410
Query 431 CGTTCGGTTATCACAACACTTCCTTTTATAGCTCCACCTTCATCTCCAGCTTCATTTTTC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CGTTCGGTTATCACAACACTTCCTTTTATAGCTCCACCTTCATCTCCAGCTTCATTTTTC 470
Query 491 CAATCAGAGCCACCTTCTGCTACACAATCACCTGTTGGAATCCTCTCTTTTAGTCCTTTG 550
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 471 CAATCAGAACCTCCTTCTGCTACACAATCACCTGTAGGAATCCTCTCTTTTAGTCCTTTG 530
Query 551 CCTTGTAACAACCGTCCTTCCATCTTCGCCATTGGACCTTACGCTCATGAAACTCAATTG 610
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 531 CCTTGTAATAACCGTCCTTCGATCTTCGCCATTGGACCTTACGCTCATGAAACTCAGTTA 590
Query 611 GTATCTCCTCCGGTTTTCTCAACTTACACTACTGAACCATCTTCAGCTCCAATCACACCT 670
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 591 GTATCGCCTCCGGTTTTCTCTACTTACACTACTGAACCATCTTCAGCTCCAATCACACCT 650
Query 671 CCTCTTGATGACTCATCTATCTACTTAACCACCACAACACCTTCTTCACCTGAAGTGCCT 730
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 651 CCTCTTGATGAATCATCTATCTACTTAACTACCACAACACCTTCTTCACCGGAAGTACCT 710
Query 731 TTTGCTCAGCTCTTTAACTCGAACCATCAAACCGGTAGCTATGGTTATAAGTTCCCAATG 790
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 711 TTTGCGCAGCTCTTTAACTCGAACCATCAAACCGGTAGCTATGGTCATAAGTTCCCAATG 770
Query 791 TCTTCTAGTTATGAGTTTCAGTTTTACCAACTTCCTCCTGGTAGTCCACTTGGTCAGCTT 850
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CCGTCTAGTTATGAGTTTCAGTTTTACCAACTTCCTCCTGGTAGTCCACTTGGTCAGCTT 830
Query 851 ATTTCCCCGAGCCC--T-G-----G-TTCTGGTCCAACTTCTCCTTTTCCCGATGGAGAA 901
|||||||||||| | | | | ||||||||||||||||||||||||||||||||||
Sbjct 831 ATTTCCCCGAGCTCGGTTGTATCCGGTTCTGGTCCAACTTCTCCTTTTCCCGATGGAGAA 890
Query 902 ACCTCGCTGTTCCCTCACTTTCAAGTCTCTGATCCTCCAAAACTGTTGAGTCC----AAA 957
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 891 ACCGCGCTGTTCCCTCACTTTCAAGTCTCTGATCCTCCAAAGCTGTTGAGTCCTGGTAAA 950
Query 958 --G-ACTG-C-------TGGTGTTACAACTCCTTGTAAAGAGCAGAAGATTGTAAGACCG 1006
| | || | ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 951 TTGCAATGTCCAAAGACTGGTGTTACAACTCCTTCTAAAGAGCAGAAGATTGCGAGACCG 1010
Query 1007 CATAAACCGGTTTCATTCGATCTTGATGCTGATCATGTCATTAGATGCGTGGATCAGAAG 1066
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1011 CATAAACCGGTTTCATTCGATCTTGACGCGGATCATGTCATTAGATGCGTGGATCAGAAG 1070
Query 1067 CTAAGAACAACGTTCCCTGAAGCATCATCAGATCAAGAATCAATGAATCATTCGTCTCTC 1126
|||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 1071 CTAAGAACAACGTTCCCTGAAGCATCATCAAATCCAGAATCAGTGAATCATTCGTCTCTC 1130
Query 1127 GGGTCCAATAAGGAATTCAATTTCGGCACGGATGAGAAACATTTGACCGTTGATGAACAT 1186
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GGGTCGAATAAGGAATTCAATTTCGGCACGGATGAGAAACATTTGACCGTTGATGAACAT 1190
Query 1187 AGATCAGCTTCGCCGAAGAACAGCAATGATTGGTCTTTTTTCCCTGTGATGCAGTCAGGT 1246
||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1191 AGAG-A--TTCGCCAAAGAATAGCAATGATTGGTCTTTCTTCCCTGTGATGCAGTCAGGT 1247
Query 1247 ACACTAAGCTAACCTTCATCAGAAGA---A-T-A----GAAATCTGAAATTTAGATATCG 1297
||||| |||||||||||| ||||||| | | | ||||||||||||||||| ||||
Sbjct 1248 ACACTTAGCTAACCTTCACCAGAAGATTTAGTTATATAGAAATCTGAAATTTAGAAATCG 1307
Query 1298 ATTCGGACAAATATCTTGTTCAAGATTCAAGAAC-AATTATAGAATTTTTAGATGATTCT 1356
|||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1308 ATTCGGACAACGATCTTGTTCAAGATTCAAGAACGAAATATAGAATTTTTAGATGATTCT 1367
Query 1357 GTTCAGGATCTTAAGGATATTTTCTTGTCTCTCTTTTTGGTTTTGTAATAAATATTTGGC 1416
||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1368 GTTCAGGATCTTAGGGATATTATCTTGTCTCTCTTTT-GGTTTTGTAATAAATATTTGGC 1426
Query 1417 ATCGTTAGTTGTTGTATATGGCTACTCTTTATGTAGttttttgtttttGTGAATACACAT 1476
| |||| ||||||||||||| || ||| |||||| ||||| | ||||||| ||||||||
Sbjct 1427 ACCGTTGGTTGTTGTATATGACTTGTCTCTATGTAATTTTT-GATTTTGTGCATACACAT 1485
Query 1477 TTGATCGCATTTGTAAATAAAATTTAATCAGTTTCTTCGGAGAAATTC 1524
|||| ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1486 TTGACCGCATTTGTAAATAAAATTTAATTAGTTTCTTCAGAGAAATTC 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5