BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63720.1 Length=1524 Score E Sequences producing significant alignments: (Bits) Value Ahg474978 jgi|Araly1|474978|fgenesh2_kg.2__108__AT1G63720.1 2093 0.0 > Ahg474978 jgi|Araly1|474978|fgenesh2_kg.2__108__AT1G63720.1 Length=1533 Score = 2093 bits (1133), Expect = 0.0 Identities = 1419/1548 (92%), Gaps = 55/1548 (4%) Strand=Plus/Plus Query 17 GGGTTACGTGTCGCTTTATTTGTAAAACGATTTTTCAGATTTTGATTGTTAAAGAAGCTT 76 |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| || Sbjct 1 GGGTTACGTGTCGCTTTATTTGTAAATGGATTTTTCAGAGTTTGATTGTTGAAGAAG-TT 59 Query 77 TCTGTGTATTATTTTTGATTTTTACTAGAGAAAAACTCGAATGCTCTG-----TTTTGTT 131 | ||||| |||| |||||||||||| |||||||||||||| |||||| ||||||| Sbjct 60 T-TGTGT-CTATTATTGATTTTTACTTGAGAAAAACTCGAACGCTCTGTTTTTTTTTGTT 117 Query 132 CTCTCGAGAAAATTCTCAGACTCAGAGAAAAGTAAAAACAGAGAAGAAAGATGAGAAGCG 191 ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 118 TTCTCGAGAAAATTATCAGACTCAGAGAAAATTAAAAACACAGAAGAAAGATGAGAAGCG 177 Query 192 GTGCTAATGGAAACAACGTTTTCGATACTATAAACGCAGCTGCTTCTGCTATTGCTTCTT 251 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 178 GTGCTAGTGGAAACAACGTTTTCGATACTATAAACGCAGCTGCTTCTGCTATTGCTTCCT 237 Query 252 CTGATGATCGTCTTCATCAATCTTCTCCGATTCATAAGAAGA-GAAAATGGTGGAATCGA 310 ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| Sbjct 238 CTGATGATCGTCTTCATCAATCTTCTCCGATTCCGAAGAA-ACGAAAATGGTGGAATCGA 296 Query 311 TGGAGTCTGTTGAAATGTTTCGGATCTTCAAGACAAAGAAAACGAATAGGAAACTCGGTT 370 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 297 TGGAGTCTGTTGAAATGTTTCAGATCTTCAAGACAAAGGAAACGAATAGGAAACTCGGTT 356 Query 371 CTTGTTCCTGAACCGGTATCAATGTCTTCTTCAAATTCAACAACATCAAATTCCGGTTAT 430 |||||||||||||||||||||| | |||||||||| |||||||||||| ||||||| Sbjct 357 CTTGTTCCTGAACCGGTATCAA--T-ATCTTCAAATT---CAACATCAAATTTCGGTTAT 410 Query 431 CGTTCGGTTATCACAACACTTCCTTTTATAGCTCCACCTTCATCTCCAGCTTCATTTTTC 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 CGTTCGGTTATCACAACACTTCCTTTTATAGCTCCACCTTCATCTCCAGCTTCATTTTTC 470 Query 491 CAATCAGAGCCACCTTCTGCTACACAATCACCTGTTGGAATCCTCTCTTTTAGTCCTTTG 550 |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 471 CAATCAGAACCTCCTTCTGCTACACAATCACCTGTAGGAATCCTCTCTTTTAGTCCTTTG 530 Query 551 CCTTGTAACAACCGTCCTTCCATCTTCGCCATTGGACCTTACGCTCATGAAACTCAATTG 610 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 531 CCTTGTAATAACCGTCCTTCGATCTTCGCCATTGGACCTTACGCTCATGAAACTCAGTTA 590 Query 611 GTATCTCCTCCGGTTTTCTCAACTTACACTACTGAACCATCTTCAGCTCCAATCACACCT 670 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 591 GTATCGCCTCCGGTTTTCTCTACTTACACTACTGAACCATCTTCAGCTCCAATCACACCT 650 Query 671 CCTCTTGATGACTCATCTATCTACTTAACCACCACAACACCTTCTTCACCTGAAGTGCCT 730 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 651 CCTCTTGATGAATCATCTATCTACTTAACTACCACAACACCTTCTTCACCGGAAGTACCT 710 Query 731 TTTGCTCAGCTCTTTAACTCGAACCATCAAACCGGTAGCTATGGTTATAAGTTCCCAATG 790 ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 711 TTTGCGCAGCTCTTTAACTCGAACCATCAAACCGGTAGCTATGGTCATAAGTTCCCAATG 770 Query 791 TCTTCTAGTTATGAGTTTCAGTTTTACCAACTTCCTCCTGGTAGTCCACTTGGTCAGCTT 850 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 771 CCGTCTAGTTATGAGTTTCAGTTTTACCAACTTCCTCCTGGTAGTCCACTTGGTCAGCTT 830 Query 851 ATTTCCCCGAGCCC--T-G-----G-TTCTGGTCCAACTTCTCCTTTTCCCGATGGAGAA 901 |||||||||||| | | | | |||||||||||||||||||||||||||||||||| Sbjct 831 ATTTCCCCGAGCTCGGTTGTATCCGGTTCTGGTCCAACTTCTCCTTTTCCCGATGGAGAA 890 Query 902 ACCTCGCTGTTCCCTCACTTTCAAGTCTCTGATCCTCCAAAACTGTTGAGTCC----AAA 957 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 891 ACCGCGCTGTTCCCTCACTTTCAAGTCTCTGATCCTCCAAAGCTGTTGAGTCCTGGTAAA 950 Query 958 --G-ACTG-C-------TGGTGTTACAACTCCTTGTAAAGAGCAGAAGATTGTAAGACCG 1006 | | || | ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 951 TTGCAATGTCCAAAGACTGGTGTTACAACTCCTTCTAAAGAGCAGAAGATTGCGAGACCG 1010 Query 1007 CATAAACCGGTTTCATTCGATCTTGATGCTGATCATGTCATTAGATGCGTGGATCAGAAG 1066 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1011 CATAAACCGGTTTCATTCGATCTTGACGCGGATCATGTCATTAGATGCGTGGATCAGAAG 1070 Query 1067 CTAAGAACAACGTTCCCTGAAGCATCATCAGATCAAGAATCAATGAATCATTCGTCTCTC 1126 |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct 1071 CTAAGAACAACGTTCCCTGAAGCATCATCAAATCCAGAATCAGTGAATCATTCGTCTCTC 1130 Query 1127 GGGTCCAATAAGGAATTCAATTTCGGCACGGATGAGAAACATTTGACCGTTGATGAACAT 1186 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 GGGTCGAATAAGGAATTCAATTTCGGCACGGATGAGAAACATTTGACCGTTGATGAACAT 1190 Query 1187 AGATCAGCTTCGCCGAAGAACAGCAATGATTGGTCTTTTTTCCCTGTGATGCAGTCAGGT 1246 ||| | |||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1191 AGAG-A--TTCGCCAAAGAATAGCAATGATTGGTCTTTCTTCCCTGTGATGCAGTCAGGT 1247 Query 1247 ACACTAAGCTAACCTTCATCAGAAGA---A-T-A----GAAATCTGAAATTTAGATATCG 1297 ||||| |||||||||||| ||||||| | | | ||||||||||||||||| |||| Sbjct 1248 ACACTTAGCTAACCTTCACCAGAAGATTTAGTTATATAGAAATCTGAAATTTAGAAATCG 1307 Query 1298 ATTCGGACAAATATCTTGTTCAAGATTCAAGAAC-AATTATAGAATTTTTAGATGATTCT 1356 |||||||||| |||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1308 ATTCGGACAACGATCTTGTTCAAGATTCAAGAACGAAATATAGAATTTTTAGATGATTCT 1367 Query 1357 GTTCAGGATCTTAAGGATATTTTCTTGTCTCTCTTTTTGGTTTTGTAATAAATATTTGGC 1416 ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 1368 GTTCAGGATCTTAGGGATATTATCTTGTCTCTCTTTT-GGTTTTGTAATAAATATTTGGC 1426 Query 1417 ATCGTTAGTTGTTGTATATGGCTACTCTTTATGTAGttttttgtttttGTGAATACACAT 1476 | |||| ||||||||||||| || ||| |||||| ||||| | ||||||| |||||||| Sbjct 1427 ACCGTTGGTTGTTGTATATGACTTGTCTCTATGTAATTTTT-GATTTTGTGCATACACAT 1485 Query 1477 TTGATCGCATTTGTAAATAAAATTTAATCAGTTTCTTCGGAGAAATTC 1524 |||| ||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1486 TTGACCGCATTTGTAAATAAAATTTAATTAGTTTCTTCAGAGAAATTC 1533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57059187010 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5