BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63780.1
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924573 jgi|Araly1|924573|scaffold_200134.1 1441 0.0
> Ahg924573 jgi|Araly1|924573|scaffold_200134.1
Length=927
Score = 1441 bits (780), Expect = 0.0
Identities = 870/915 (95%), Gaps = 0/915 (0%)
Strand=Plus/Plus
Query 109 CTCACGACGAATCACGATGCAACGCAGACTCGTAAGGTTaaaaaaaGAGTATATCTACAG 168
||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||
Sbjct 7 CTCACGACGAATCACGATGTTGCGCAGAAACGTAAGGTTAAGAAAAGAGTATCTCTACAG 66
Query 169 GAAAAGCTTGGAAGGTGATGAGCGTAAGGTCTATGAGCAGAAGCGGCTGATAAGAGAAGC 228
||||| |||||||||||| |||||| |||||||||| |||||||| ||||||||||||
Sbjct 67 GAAAAACTTGGAAGGTGACGAGCGTTTGGTCTATGAGAAGAAGCGGAAGATAAGAGAAGC 126
Query 229 CCTTCAAGAAGGAAAGCCGATTCCTACTGAGCTCCGAAACGTCGAAGCCAAGCTTCGACA 288
|||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||
Sbjct 127 CCTTCAAGAAGGAAGGCCGATTCCTACTGAGCTCCGAAACGAGGAGGCCAGGCTTCGACA 186
Query 289 AGAAATTGATCTTGAAGACCAAAACACAGCTGTTCCGCGGAGTCATATCGATGATGAATA 348
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 187 AGAAATTGATCTTGAAGACCAAAACACAGCTGTTCCGCGGAGTCATATCGACGATGAATA 246
Query 349 TGCAAATGCTACGGAAGCAGATCCAAAGATTTTGTTGACAACTTCTAGGAATCCAAGTGC 408
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 247 TGCAAATGCTACGGAAGCAGATCCAAAGATTTTGTTGACAACGTCTAGGAATCCAAGTGC 306
Query 409 TCCGCTCATCCGATTCACTAAGGAATTGAAGTTTGTGTTTCCTAACTCTCAGAGAATAAA 468
||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 307 TCCCCTCATCCGATTCACAAAGGAATTGAAGTTTTTGTTTCCTAACTCTCAGAGAATAAA 366
Query 469 TCGTGGTAGTCAGGTCATTTCTGAGATCATTGAAACTGCTCGTTCCCATGATTTTACTGA 528
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 367 TCGTGGTGGTCAGGTCATTTCTGAGATCATTGAAACTGCTCGTTCGCATGATTTTACTGA 426
Query 529 TGTTATATTGGTTCATGAGCACCGTGGTGTGCCTGATGGTCTCATTATCTCTCATCTCCC 588
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 427 TGTTATATTGGTTCATGAGCACCGCGGTGTGCCTGATGGTCTCATTATCTCTCATCTCCC 486
Query 589 ATTTGGACCAACTGCATACTTTGGATTACTTAATGTGGTAACAAGACATGATATTTCAGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATTTGGACCAACTGCATACTTTGGATTACTTAATGTGGTAACAAGACATGATATTTCAGA 546
Query 649 CAAGAAATCCATTGGAAAAATGCCTGAGCAATATCCTCATCTCATTTTTAACAACTTTAC 708
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CAAGAAAGCCATTGGAAAAATGCCTGAGCAATATCCTCATCTCATTTTTAACAACTTTAC 606
Query 709 TACTCAGATGGGTCAAAGAGTTGGAAACATCTTAAAACATATCTTCCCTGCTCCAAAACT 768
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 607 TACTCAGATGGGTCAAAGAGTTGCAAACATCTTAAAACATATCTTCCCTGCTCCAAAACT 666
Query 769 GGATGCAAAACGTATAGTTACTTTTTCTAATCAATCCGATTATATATCATTCAGGAATCA 828
|||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 667 GGATGCAAGACGTATAGTTACTTTTGCTAATCAATCTGATTATATTTCATTCAGGAATCA 726
Query 829 TGTCTATGATAAAGGAGAGGGAGGTCCAAAATCAATCGAGCTTAAAGAAATCGGTCCTCG 888
|||||||||||||||||| ||||| || ||||| || |||||||||||||||||||||||
Sbjct 727 TGTCTATGATAAAGGAGAAGGAGGCCCGAAATCGATTGAGCTTAAAGAAATCGGTCCTCG 786
Query 889 ATTTGAGTTGCGGCTCTACCAGGTGAAATTAGGAACTGTGGAACAAAATGAAGCAGAGAT 948
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 787 GTTTGAGTTGCGGCTCTACCAGGTGAAATTAGGAACAGTGGAACAAAATGAAGCAGAGAT 846
Query 949 CGAATGGGTTATAAGACCGTACATGAACACCTCTAAAAAGCGCAAGTTCATCGGTGAATG 1008
|||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||
Sbjct 847 CGAATGGGTTATTAGACCGTACATGAACACCGCTAAAAAACGCCAGTTCATCGGTGAATG 906
Query 1009 ATGACTAAACGGAAC 1023
||| |||||||||||
Sbjct 907 ATGGCTAAACGGAAC 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5