BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63800.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474975 jgi|Araly1|474975|fgenesh2_kg.2__105__AT1G63800.1 1205 0.0
Ahg493844 jgi|Araly1|493844|fgenesh2_kg.7__3277__AT5G41340.1 564 4e-160
> Ahg474975 jgi|Araly1|474975|fgenesh2_kg.2__105__AT1G63800.1
Length=768
Score = 1205 bits (652), Expect = 0.0
Identities = 741/781 (95%), Gaps = 17/781 (2%)
Strand=Plus/Plus
Query 38 aaaaaaaaaaaaatcagaaaaaaaGAAGAAGAGAGAAACCATGTCTTCGCCGAGCAAGCG 97
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAAAAATCAGCAAAAAAGAAGAAGAGAGAAACCATGTCTTCGCCGAGCAAGCG 60
Query 98 TAGAGAAATGGATTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATCAATGA 157
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TAGAGAAATGGATTTGATGAAACTGATGATGAGTGACTACAAGGTTGAGATGATCAATGA 120
Query 158 TGGCATGCAAGAGTTCTTTGTCGAATTCAGTGGACCCAAAGACAGTATATATGAGGGAGG 217
||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 121 TGGCATGCAAGAGTTCTTTGTTGAATTCAATGGACCTAAAGACAGTATATATGAGGGAGG 180
Query 218 TGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGG 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGG 240
Query 278 TTTCATTACCAAAATATACCACCCTAATGTCGATGAAATGTCAGGTTCTGTTTGTCTAGA 337
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||
Sbjct 241 TTTCATTACCAAAATATACCACCCGAATGTCGATGAAATGTCCGGTTCTGTGTGTTTAGA 300
Query 338 TGTTATTAACCAGACCTGGAGCCCGATGTTCGACCTGGTGAATGTGTTCGAGACATTTCT 397
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TGTTATTAACCAGACCTGGAGCCCGATGTTCGACCTGGTGAATGTGTTTGAGACATTTCT 360
Query 398 TCCGCAACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGTGAAGCAGCTGCATT 457
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 TCCTCAACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGAGAAGCAGCTGCATT 420
Query 458 GATGATGCGTGATCGTCCTACCTATGAACAGAGAGTTAAAGAGTATTGTGAGAAATACGC 517
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 GATGATGCGTGATCGTCCTACCTATGAACAGAGAGTTAAAGAGTATTGCGAGAAATACGC 480
Query 518 AAAGCCAAGGGCGGATACTGAGGAAATGTCTAGtgatgatgaaatgagtgaagatgaata 577
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 AAAGCCAAGGGAGGATACTGAGGAAATGTCTAGTGATGATGAAATGAGTGAAGACGAATA 540
Query 578 tgcctcggatggtgatgatgaagatgatgTTGCAATCGCCGGTAAACTTGATCCTTAATC 637
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 TGCCTCAGACGGTGATGATGAAGATGATGTTGCAATCGCAGGTAAACTTGATCCTTAATC 600
Query 638 CCGCATTGGTCTTGATATGAATCATGTAGCTGGCTTAATAGATGGCTAAACCGGGGATGA 697
| |||||||||||| |||||||||||| ||||||||||| | | ||||||||||| |||
Sbjct 601 C-GCATTGGTCTTGGTATGAATCATGTGGCTGGCTTAAT-G--G-CTAAACCGGGG-TGA 654
Query 698 CAAAAAGAAGCTGGTGACTTTGTATGTATCATGTATATATGAATAATCAATGAATGTTTA 757
|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 655 CAAAAAGAAGCTGGTGACTTTGTAC--AT-ATGTATAT--GAATAATCAATGAATGTTTA 709
Query 758 AAGGTTCCAGT-TTTAA-TTGAACTGTAAAATCTCTAT--TTCTCTTGTTGTTTACGTTG 813
||| ||||| | ||||| |||||||||||||||||| | |||||||||||||||| |||
Sbjct 710 AAG-TTCCA-TCTTTAAATTGAACTGTAAAATCTCTCTCATTCTCTTGTTGTTTACTTTG 767
Query 814 T 814
|
Sbjct 768 T 768
> Ahg493844 jgi|Araly1|493844|fgenesh2_kg.7__3277__AT5G41340.1
Length=894
Score = 564 bits (305), Expect = 4e-160
Identities = 523/626 (84%), Gaps = 23/626 (4%)
Strand=Plus/Plus
Query 1 ACA-TTATCTT-ATTTCTCCACTTGATTCC--CAGAAG-ACaaaaaaaaaaaaaatcaga 55
||| || |||| || |||| ||| || ||| ||||| | |||||||||||||||||||
Sbjct 13 ACATTTTTCTTCATCTCTCTACTCGAATCCGGAAGAAGAAGAAAAAAAAAAAAAATCAGA 72
Query 56 -aaa-a-aa--G-A---A-G-A-AGAGAGAAACCATGTCTTCGCCGAGCAAGCGTAGAGA 103
||| | || | | | | | ||| | ||| ||||||||||||||||| || |||||
Sbjct 73 GAAACACAAGCGAACCCAGGCAGAGAAAAAAAAAATGTCTTCGCCGAGCAAACGCAGAGA 132
Query 104 AATGGATTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATCAATGATGGCAT 163
||||||| ||||||| ||||||||||| || || || ||||| | |||||| ||||||||
Sbjct 133 AATGGATATGATGAAGCTGATGATGAGCGATTATAAAGTGGAAACGATCAACGATGGCAT 192
Query 164 GCAAGAGTTCTTTGTCGAATTCAGTGGACCCAAAGACAGTATATATGAGGGAGGTGTGTG 223
|||||| |||| ||| ||||||| |||||||||||||||| | ||| | |||||||||||
Sbjct 193 GCAAGAATTCTATGTTGAATTCAATGGACCCAAAGACAGTCTCTATCAAGGAGGTGTGTG 252
Query 224 GAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCAT 283
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 253 GAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCAT 312
Query 284 TACCAAAATATACCACCCTAATGTCGATGAAATGTCAGGTTCTGTTTGTCTAGATGTTAT 343
||| ||||| || || |||||||| |||||| |||| |||||||||||| ||||||| ||
Sbjct 313 TACTAAAATTTATCATCCTAATGTTGATGAACTGTCGGGTTCTGTTTGTTTAGATGTGAT 372
Query 344 TAACCAGACCTGGAGCCCGATGTTCGACCTGGTGAATGTGTTCGAGACATTTCTTCCGCA 403
|||||| || ||||| || ||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 373 TAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAATGTGTTTGAGACATTTCTTCCTCA 432
Query 404 ACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGTGAAGCAGCTGCATTGATGAT 463
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || |||||
Sbjct 433 GCTTCTTCTTTATCCAAACCCATCAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGAT 492
Query 464 GCGTGATCGTCCTACCTATGAACAGA-GAGTTAAAGAGTATTGTGAGAAATACGCAAAGC 522
||||||||||||| | ||||| || | |||||||||| || |||||||| || |||||||
Sbjct 493 GCGTGATCGTCCTGCTTATGAGCA-ACGAGTTAAAGAATACTGTGAGAAGTATGCAAAGC 551
Query 523 CAAGGGC-GGATACTGAGGA-AATGTCTAGtgatgatgaaatgagtgaagatgaatatgc 580
|| ||| || | | || || || |||||| ||||| ||| | |||||||| ||||| |
Sbjct 552 CAGGGGAAGGTT-CAGAAGATAA-GTCTAGCGATGAAGAACTAAGTGAAGAAGAATACGG 609
Query 581 ctcggatggtgatgatgaagatgatg 606
||| |||| ||| ||||| |||||||
Sbjct 610 CTCAGATGATGAAGATGATGATGATG 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5