BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63820.1 Length=1306 Score E Sequences producing significant alignments: (Bits) Value Ahg474973 jgi|Araly1|474973|fgenesh2_kg.2__103__AT1G63820.1 1903 0.0 > Ahg474973 jgi|Araly1|474973|fgenesh2_kg.2__103__AT1G63820.1 Length=1285 Score = 1903 bits (1030), Expect = 0.0 Identities = 1226/1314 (93%), Gaps = 39/1314 (3%) Strand=Plus/Plus Query 1 GTCATGCCTTGGTTCTGAAACAAG-AACTGTGAAGAAAAAGAGAGAAACaaaaaaaaaaa 59 |||||| ||||||||||||||||| ||||||||||||||||| | | | |||||||||| Sbjct 1 GTCATGTCTTGGTTCTGAAACAAGAAACTGTGAAGAAAAAGA-A-AGA-GAAAAAAAAAA 57 Query 60 TCACACTTTTTTGGGTAAAAGGTCCAAATTTACATTAAGAAAAAACAG--TTTTCTTTTT 117 ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| Sbjct 58 TCACACTTTTTTGGGAAAAAGGTCCAAATTTACATTAAGAAAAAA-GGTTTTTTCTTTTT 116 Query 118 GCCAATTTTGGATTCTGGTGGTTTTCaaaaaaaCAAAGATCACGAGTGTCACTTGTGTTT 177 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 117 GCCATTTTTGGATTCTGGTGGTTTTCAAAAAAACAAAGATCACGAGTGTCACTTGTG-TT 175 Query 178 TCTCTGTAACCGTTTCATTTGCTCAATTCAATTGCAGAGACAG--TaaaaaaaGACAGAA 235 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 176 TCTCTGTAACCGTTTCATTTGCTGAATTCAATTGCAGAGACAGAAGAAAAAAAGACAGAA 235 Query 236 CATAACCCCAAAAGATTCACTTGTTTAT-CTCTCTTCTTCTTCATTGAGAAT-CTTGAGT 293 ||||| ||||||||||||| |||||| | |||||||||||||| | | | ||| | Sbjct 236 CATAA-CCCAAAAGATTCAATTGTTT-TGCTCTCTTCTTCTTC--T---ACTCCTTCA-- 286 Query 294 TTGTGTTACCAAAATAAAAAGGGCATGGATTCTGATCTTTATATCTTTGATGGGTCTTCA 353 | || | ||| ||||||||||||||||||||||||||||||||||| Sbjct 287 -T-TG-----AGAAT------CTTATGGATTCTGATCTTTATATCTTTGATGGGTCTTCT 333 Query 354 TCTTCTTCCTCAATCTGCCACAGTACTGATCCTGATATGTTTTCCTCCGACACAACAACA 413 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 334 TCTTCTTCCTCAATTTGCCACAGTACTGATCCTGATATGTTTTCTTCAGACACAACAACA 393 Query 414 ACAACAGATCTCTACTGCAACAATCCTTATCTCAATCC-TTCAATGGATGATCATCAATC 472 ||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct 394 ACAACAGATCTCTTCTGCAACAATCCTTATCTCAATCCATT-AATGGATGATCATCAATC 452 Query 473 TCTTAGTTTCTTTGAAAGTTTTACTCCGACGACTCATCATATCCTCTCTTCTTCTCCTCC 532 ||| |||||||||||||||||||| || |||| ||||||| |||||||||||||||| || Sbjct 453 TCTCAGTTTCTTTGAAAGTTTTACCCCAACGAGTCATCATCTCCTCTCTTCTTCTCCACC 512 Query 533 AATCTCTCAGCTCCAGACCTTAACTCTCACACACACAAACAGTTTCCCCAACTTCTCCGG 592 ||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||| Sbjct 513 AATCTCTCAGCTCCAAACCTTAACTCTCTCTCACACAAACAGTTTCCCCAATTTCTCCGG 572 Query 593 TTTCGAAAACTTCGACACTGTCAAAACAGAGCAGCTCTTGTTTAACTCTCCCTTTGATGC 652 |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| Sbjct 573 TTTCGAAAACTTCGACGCCGTCAAAACAGAGCAGCTCTTGTTTAATTCTCCCTTTGATGC 632 Query 653 TCCATTCATGGAAGATTCCTCGAATTTTCAGAATCAGAATTTGTTAAACTCGCCGGAAGA 712 |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 633 TCCAATCATGGAAGATTCCTCCAATTTCCAGAATCAGAATTTGTTAAACTCGCCGGAAGA 692 Query 713 TTCCTTCTTCTCC-GATCACATGCGACGAGTTTACAGCACCGGAGATTTGCAGAATTTAG 771 ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 693 TTCCTTCTTCTCCTG-TCACATGCGACGAGTTTATAGCACCGGAGATTTGCAGAATTTAG 751 Query 772 GAAGGGATTTTACGGGACAGAGATCATACTCGAGTCCTTTGGCGGCGGAGAGTTCACCAA 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 752 GAAGGGATTTTACGGGACAGAGATCATACTCGAGTCCTTTGGCGGCGGAGAGTTCATCAA 811 Query 832 CGACGGTGTTTTCCGGCGATGAACAAAGCTTGAGGGTGGGGCGTTACAGTTCCGAAGAAC 891 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 812 CGACGGTGTTTTCCGGCGAAGAACAAAGCTTGAGGGTGGGGCGTTACAGTTCCGAAGAAC 871 Query 892 GTAAAGAGAAGATTTCTAAGTATAGAGCTAAACGAACACAGAGAAACTTCACCAAAACCA 951 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 872 GTAAAGAGAAGATTTCTAAGTATAGGGCTAAACGAACACAGAGAAACTTCACCAAAACCA 931 Query 952 TTAAGTATGCATGCCGGAAAACGTTGGCGGACAACAGACCAAGAGTACGTGGCAGATTTG 1011 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 TTAAGTATGCATGCCGGAAAACGTTGGCGGACAACAGACCAAGAGTACGTGGCAGATTTG 991 Query 1012 CAAGAAACGACGAAGTGTTTGAGAACCCCAAGATTGCTTCTTCTTTCACTAGACAAGAAA 1071 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 992 CAAGAAACGACGAAGTTTTTGAGAACCCCAAGATTGCTTCTTCCTTCACTAGACAAGAAA 1051 Query 1072 ACGACGACGACCTTTGGAATTTGGATGGGCTGCATGAGGAAGAAGAAGCTTGTGTGAACT 1131 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1052 ACGACGACGACCTTTGGAATTTGGATGGGTTGCATGAGGAAGAAGAAGCTTGTGTGGACT 1111 Query 1132 TAGTGGAATGTCAGTCTCAGTCTCAGCCTCAGTTGCAAATGCAATACATGACAAATTCCT 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1112 TAGTGGAATGTCAGTCTCAGTCTCAGCCTCAGTTGCAAATGCAATACATGACAAATTCGT 1171 Query 1192 ACTGGTGAAATTAAAGCCTCTGTTTGAGAAGGAAGAGATGAATATTTTTCCCATTTAGTT 1251 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1172 ACTGGTGAAATTAAAGTCTCTGTTTGAGAAGGAAGAGATTAATATTTTTCCCATTTAGTT 1231 Query 1252 TTAATATGCAGACGAATCGAATTAAATCATAT-ATATTAGCAATGTATTGTAGT 1304 |||||||||||||||||||||| ||||||||| |||||||||||| |||||||| Sbjct 1232 TTAATATGCAGACGAATCGAATCAAATCATATTATATTAGCAATGCATTGTAGT 1285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48835456677 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5