BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63820.1
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474973 jgi|Araly1|474973|fgenesh2_kg.2__103__AT1G63820.1 1903 0.0
> Ahg474973 jgi|Araly1|474973|fgenesh2_kg.2__103__AT1G63820.1
Length=1285
Score = 1903 bits (1030), Expect = 0.0
Identities = 1226/1314 (93%), Gaps = 39/1314 (3%)
Strand=Plus/Plus
Query 1 GTCATGCCTTGGTTCTGAAACAAG-AACTGTGAAGAAAAAGAGAGAAACaaaaaaaaaaa 59
|||||| ||||||||||||||||| ||||||||||||||||| | | | ||||||||||
Sbjct 1 GTCATGTCTTGGTTCTGAAACAAGAAACTGTGAAGAAAAAGA-A-AGA-GAAAAAAAAAA 57
Query 60 TCACACTTTTTTGGGTAAAAGGTCCAAATTTACATTAAGAAAAAACAG--TTTTCTTTTT 117
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 58 TCACACTTTTTTGGGAAAAAGGTCCAAATTTACATTAAGAAAAAA-GGTTTTTTCTTTTT 116
Query 118 GCCAATTTTGGATTCTGGTGGTTTTCaaaaaaaCAAAGATCACGAGTGTCACTTGTGTTT 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 117 GCCATTTTTGGATTCTGGTGGTTTTCAAAAAAACAAAGATCACGAGTGTCACTTGTG-TT 175
Query 178 TCTCTGTAACCGTTTCATTTGCTCAATTCAATTGCAGAGACAG--TaaaaaaaGACAGAA 235
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 176 TCTCTGTAACCGTTTCATTTGCTGAATTCAATTGCAGAGACAGAAGAAAAAAAGACAGAA 235
Query 236 CATAACCCCAAAAGATTCACTTGTTTAT-CTCTCTTCTTCTTCATTGAGAAT-CTTGAGT 293
||||| ||||||||||||| |||||| | |||||||||||||| | | | ||| |
Sbjct 236 CATAA-CCCAAAAGATTCAATTGTTT-TGCTCTCTTCTTCTTC--T---ACTCCTTCA-- 286
Query 294 TTGTGTTACCAAAATAAAAAGGGCATGGATTCTGATCTTTATATCTTTGATGGGTCTTCA 353
| || | ||| |||||||||||||||||||||||||||||||||||
Sbjct 287 -T-TG-----AGAAT------CTTATGGATTCTGATCTTTATATCTTTGATGGGTCTTCT 333
Query 354 TCTTCTTCCTCAATCTGCCACAGTACTGATCCTGATATGTTTTCCTCCGACACAACAACA 413
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 334 TCTTCTTCCTCAATTTGCCACAGTACTGATCCTGATATGTTTTCTTCAGACACAACAACA 393
Query 414 ACAACAGATCTCTACTGCAACAATCCTTATCTCAATCC-TTCAATGGATGATCATCAATC 472
||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 394 ACAACAGATCTCTTCTGCAACAATCCTTATCTCAATCCATT-AATGGATGATCATCAATC 452
Query 473 TCTTAGTTTCTTTGAAAGTTTTACTCCGACGACTCATCATATCCTCTCTTCTTCTCCTCC 532
||| |||||||||||||||||||| || |||| ||||||| |||||||||||||||| ||
Sbjct 453 TCTCAGTTTCTTTGAAAGTTTTACCCCAACGAGTCATCATCTCCTCTCTTCTTCTCCACC 512
Query 533 AATCTCTCAGCTCCAGACCTTAACTCTCACACACACAAACAGTTTCCCCAACTTCTCCGG 592
||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||
Sbjct 513 AATCTCTCAGCTCCAAACCTTAACTCTCTCTCACACAAACAGTTTCCCCAATTTCTCCGG 572
Query 593 TTTCGAAAACTTCGACACTGTCAAAACAGAGCAGCTCTTGTTTAACTCTCCCTTTGATGC 652
|||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 573 TTTCGAAAACTTCGACGCCGTCAAAACAGAGCAGCTCTTGTTTAATTCTCCCTTTGATGC 632
Query 653 TCCATTCATGGAAGATTCCTCGAATTTTCAGAATCAGAATTTGTTAAACTCGCCGGAAGA 712
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 633 TCCAATCATGGAAGATTCCTCCAATTTCCAGAATCAGAATTTGTTAAACTCGCCGGAAGA 692
Query 713 TTCCTTCTTCTCC-GATCACATGCGACGAGTTTACAGCACCGGAGATTTGCAGAATTTAG 771
||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 693 TTCCTTCTTCTCCTG-TCACATGCGACGAGTTTATAGCACCGGAGATTTGCAGAATTTAG 751
Query 772 GAAGGGATTTTACGGGACAGAGATCATACTCGAGTCCTTTGGCGGCGGAGAGTTCACCAA 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 752 GAAGGGATTTTACGGGACAGAGATCATACTCGAGTCCTTTGGCGGCGGAGAGTTCATCAA 811
Query 832 CGACGGTGTTTTCCGGCGATGAACAAAGCTTGAGGGTGGGGCGTTACAGTTCCGAAGAAC 891
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CGACGGTGTTTTCCGGCGAAGAACAAAGCTTGAGGGTGGGGCGTTACAGTTCCGAAGAAC 871
Query 892 GTAAAGAGAAGATTTCTAAGTATAGAGCTAAACGAACACAGAGAAACTTCACCAAAACCA 951
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 872 GTAAAGAGAAGATTTCTAAGTATAGGGCTAAACGAACACAGAGAAACTTCACCAAAACCA 931
Query 952 TTAAGTATGCATGCCGGAAAACGTTGGCGGACAACAGACCAAGAGTACGTGGCAGATTTG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TTAAGTATGCATGCCGGAAAACGTTGGCGGACAACAGACCAAGAGTACGTGGCAGATTTG 991
Query 1012 CAAGAAACGACGAAGTGTTTGAGAACCCCAAGATTGCTTCTTCTTTCACTAGACAAGAAA 1071
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 992 CAAGAAACGACGAAGTTTTTGAGAACCCCAAGATTGCTTCTTCCTTCACTAGACAAGAAA 1051
Query 1072 ACGACGACGACCTTTGGAATTTGGATGGGCTGCATGAGGAAGAAGAAGCTTGTGTGAACT 1131
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1052 ACGACGACGACCTTTGGAATTTGGATGGGTTGCATGAGGAAGAAGAAGCTTGTGTGGACT 1111
Query 1132 TAGTGGAATGTCAGTCTCAGTCTCAGCCTCAGTTGCAAATGCAATACATGACAAATTCCT 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1112 TAGTGGAATGTCAGTCTCAGTCTCAGCCTCAGTTGCAAATGCAATACATGACAAATTCGT 1171
Query 1192 ACTGGTGAAATTAAAGCCTCTGTTTGAGAAGGAAGAGATGAATATTTTTCCCATTTAGTT 1251
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1172 ACTGGTGAAATTAAAGTCTCTGTTTGAGAAGGAAGAGATTAATATTTTTCCCATTTAGTT 1231
Query 1252 TTAATATGCAGACGAATCGAATTAAATCATAT-ATATTAGCAATGTATTGTAGT 1304
|||||||||||||||||||||| ||||||||| |||||||||||| ||||||||
Sbjct 1232 TTAATATGCAGACGAATCGAATCAAATCATATTATATTAGCAATGCATTGTAGT 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5