BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63830.2
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924569 jgi|Araly1|924569|scaffold_200130.1 1140 0.0
Ahg330382 jgi|Araly1|330382|fgenesh1_pm.C_scaffold_7002609 634 0.0
> Ahg924569 jgi|Araly1|924569|scaffold_200130.1
Length=737
Score = 1140 bits (617), Expect = 0.0
Identities = 700/740 (95%), Gaps = 6/740 (1%)
Strand=Plus/Plus
Query 71 TTTTTG-AGTTTCCAAAGCAATGGCGGCGTCGCAAGATAAGTTGGATAAGATGAAACTTA 129
|||||| |||||||||||||||||||| ||| ||||||||| |||| |||||||||||
Sbjct 2 TTTTTGAAGTTTCCAAAGCAATGGCGGGGTCACAAGATAAGCTGGAGAAGATGAAACTCC 61
Query 130 GGCAAGATTACCGGAATTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTC 189
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GTCAGGATTACCGGAACTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTC 121
Query 190 CCTATTGCTGCATCTCGTGTCTGTGTGGACCTTGTGTGTCATACATGCTTCGGAGAAGAG 249
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 122 CCTATTGCTGCATCTCGTGTCTGTGTGGACCTTGTGTTTCATACATGCTTCGGAGAAGAG 181
Query 250 CACTTTACAATGACATGTCAAGGTATACTTGCTGTGCTGGATATATGCCCTGTAGTGGAA 309
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 182 CACTTTACAATGACATGTCAAGGTATACTTGCTGTGCTGGATATATGCCTTGTAGTGGGA 241
Query 310 GGTGTGGAGAAAGCAAATGTCCTCAACTTTGCCTTGCCACTGAGGTCTTCCTTTGCTTCG 369
| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 242 GATGTGGAGAAAGCAAATGTCCTCAACTTTGCCTTGCCACCGAGGTTTTTCTTTGCTTCG 301
Query 370 GAAACTCTGTGGCCTCTACCCGCTTTCTTCTGCAGGATGAATTCAACATCCAGACAACAC 429
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GAAACTCCGTGGCCTCTACCCGCTTTCTTCTGCAGGATGAATTCAACATCCAGACAACAC 361
Query 430 AATGCGACAATTGCATAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AATGCGACAATTGCATAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCT 421
Query 490 CTATAGTTGCTTGCATTGTTGGTAGTGATGAACTTTCCGAGGCTTCTCAGATACTCTCTT 549
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 422 CTATAGTTGCTTGCATTGTTGGTAGTAATGAACTTTCTGAGGCTTCTCAGATACTCTCTT 481
Query 550 GCTGTGCTGATATGGTCTACTGCACGGTCTGCGCATGTATGCAGACACAACACAAACTTG 609
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 482 GCTGTGCTGAAATGGTCTACTGCACGGTTTGTGCATGTATGCAGACACAACACAAGCTTG 541
Query 610 AGATGGACAAAAGAGATGGAGTGTTTGGATCGCAGCCAATGGGTGTGCCACCAGCTCAGC 669
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 542 AGATGGACAAAAGAGATGGAGTGTTTGGATCTCAACCAATGGGCGTGCCACCAGCTCAGC 601
Query 670 AGATGTCTCGTTTTGATCAACCTGTCCCTCCTCCAGTCGGATACCCTCAGTCCTATCCAC 729
||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 602 AGATGTCCCGTTTTGATCAACCTGTCCCTCCTGC--T-GGATACCCTCAGTCCTATCCAC 658
Query 730 CGCCTGCTCAAGGCTACCCTCCTGCATCTTACCCGCCTCCCGGTTATCCTCAGCATTAAG 789
|||||||||||||||| ||||||||||||||||||||||| |||||||| || |||| ||
Sbjct 659 CGCCTGCTCAAGGCTATCCTCCTGCATCTTACCCGCCTCCTGGTTATCCCCAACATTGAG 718
Query 790 AAAT-TTAACCAGTATCTTC 808
|| | |||||| ||||||||
Sbjct 719 AA-TCTTAACCGGTATCTTC 737
> Ahg330382 jgi|Araly1|330382|fgenesh1_pm.C_scaffold_7002609
Length=783
Score = 634 bits (343), Expect = 0.0
Identities = 542/637 (85%), Gaps = 18/637 (3%)
Strand=Plus/Plus
Query 90 ATGGCGGCG-TCGCAAGATAAG-TTGGATAAGATGAAACTTAGGC-AAGATTACCGGAAT 146
||||||| | ||||| |||||| || ||||||||| |||| ||| ||| ||||||||||
Sbjct 1 ATGGCGG-GTTCGCAGGATAAGCTT-GATAAGATGCAACTCCGGCAAAG-TTACCGGAAT 57
Query 147 TTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCTATTGCTGCATCTCG 206
||||||||||||||||||||| |||||||| | ||||| ||||| ||||| | | |||||
Sbjct 58 TTATGGCACTCCGATCTCATGAGCACCGTCTCGGCCGATACTCCTTATTGTTTCTTCTCG 117
Query 207 TGTCTGTGTGGACCTTGTGTGTCATACATGCTTCGGAGAAGAGCACTTTACAATGACATG 266
||| ||||||||||||| || |||||| | ||||||| ||||||||||||||||||||||
Sbjct 118 TGTTTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAAAGAGCACTTTACAATGACATG 177
Query 267 TCAAGGTATACTTGCTGTGCTGGATATATGCCCTGTAGTGG-AAGGTGTGGAGAAAGCAA 325
|||||||| ||||| |||| ||| || ||||| |||||||| || |||||||||||||||
Sbjct 178 TCAAGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAA-GTGTGGAGAAAGCAA 236
Query 326 ATGTCCTCAACTTTGCCTTGCCACTGAGGTCT-TCCTTTGCTTCGGAAACTCTGTGGCCT 384
||| || ||| |||| |||||||||||||| | | || || ||||| || |||||||| |
Sbjct 237 ATGCCCGCAATTTTGTCTTGCCACTGAGGTGTGT-CTCTGTTTCGGGAATTCTGTGGCAT 295
Query 385 CTACCCGCTTTCTTCTGCAGGATGAATTCAACATCCAGACAACACAATGCGACAATTGCA 444
|||| || ||| | ||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 296 CTACTCGTTTTATGCTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCA 355
Query 445 TAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCTCTATAGTTGCTTGCA 504
|||||||||||||||||||||||| |||| | |||||||| |||||| | || |||||||
Sbjct 356 TAATTGGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCA 415
Query 505 TTGTTGGTAGTGATGAACTTTCCGAGGCTTCTCAGATACTCTCTTGCTGTG-CTGATATG 563
|||| || ||||||||||| || || ||||||||| | || ||||| | || | ||||||
Sbjct 416 TTGTAGGAAGTGATGAACTCTCTGAAGCTTCTCAGCTTCTTTCTTGTT-TGGCGGATATG 474
Query 564 GTCTACTGCACGGTCTGCGCATGTATGCAGACACAACACAA-ACTTGAGATGGACAAAAG 622
||||| |||||||| || || |||||||||||||||||||| | ||||||||||||||||
Sbjct 475 GTCTATTGCACGGTTTGTGCGTGTATGCAGACACAACACAAGA-TTGAGATGGACAAAAG 533
Query 623 AGATGGAGTGTTTGGATCG-CAGCCAATGGGTGTGCCACCAGCTCAGCAGATGTCTCGTT 681
|||||| ||| || | || ||||||||| |||||||| |||||||| ||||||||
Sbjct 534 AGATGGTGTGATTAG-TCCTCAGCCAATGTCAGTGCCACCGGCTCAGCAAATGTCTCGCA 592
Query 682 TTGATCAACCTGTCCCTCCTCCA-GTCGGATACCCTC 717
|||||||||| |||||||| | | | ||| |||||||
Sbjct 593 TTGATCAACCAGTCCCTCC-CTATGCCGGTTACCCTC 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37627319079
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5