BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63840.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474972 jgi|Araly1|474972|fgenesh2_kg.2__102__AT1G63840.1 800 0.0
Ahg947578 jgi|Araly1|947578|scaffold_703807.1 206 4e-52
> Ahg474972 jgi|Araly1|474972|fgenesh2_kg.2__102__AT1G63840.1
Length=952
Score = 800 bits (433), Expect = 0.0
Identities = 668/773 (86%), Gaps = 50/773 (6%)
Strand=Plus/Plus
Query 77 AGAAACATCATCA-C-CACATTCCTGGCTA-ATATCCTTCATCTAGAACAATTATTAACG 133
||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 1 AGAAACATCATCACCACACATTCCTGGCTATATATCCTTCATCTAGAACAATAATTAAAG 60
Query 134 AATCAAAATACCAAAAAACAAAGCACCTCATTGACTATTAAATTAGTA-CTAATACATTA 192
| ||||||| ||||| | ||| || | || | | |||| | | | || || | |
Sbjct 61 ACTCAAAATGCCAAAGGA-AAA-CA-CGCA---A--A-TAAA-T-GCACCTCATTGACT- 108
Query 193 ATTAAGTTA-TTATTCCTATATATAAATCTCACCCATT-CTCCACCT-TATCATCACAAT 249
||||| ||| | || | | || || || | | ||| | || | ||| || | |||
Sbjct 109 ATTAAATTAGTAATGCAT-TA-ATTAA-GT-A---ATTAAT-CA--TATAT-AT-A-AAT 155
Query 250 CCAAAActctctctc-tctctctc-tctctgtctcttgtcttatcattta--tctctctA 305
|| | || |||| | ||| | || || | ||| | |||||||||||| ||||||||
Sbjct 156 CCCACCCT-TCTC-CATCT-TATCATCACAGTC-CAAATCTTATCATTTATCTCTCTCTA 211
Query 306 ACGGCGAGGCAATGGGTTTTCCGGTGGGATATTCTGAGCTACTTCTCCCAAAAATCTT-T 364
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 212 ACGGCGAGGCAATGGGTTTTCCGGTGGGATATTCCGAGCTCCTTCTCCCAAAAATCTTCC 271
Query 365 TTCTACTTGTTATCTTTCTTAGGTTTGATACGTAAACTCATCTCCACAATGTTCAAGATC 424
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 272 TT-TACTTGCTCTCTTTCTTAGGTTTGATACGTAAACTCATCTCCACAATGTTCAAGGTC 330
Query 425 ATTGGTCTACCAGATTTCTTAGAACCTGAACCGGTTTCAACCTCATGGCCCGACCCACCA 484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 ATTGGTCTACCTGATTTCTTAGAACCTGAACCGGTTTCAACCTCATGGCCCGACCCACCA 390
Query 485 CCCACGTTGACCAAACCTGACTCAGCAGCAATACTAGCCGGAGAGATGTTACCGGTTGTT 544
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 391 CCCACGTTGACCAAACCAGAGTCAGCAGCGATACTAGCCGGAGAGATGTTACCGGTTGTT 450
Query 545 CGATTCTCGGATATAAACCGACCGGAATCCGAGTGTTGCGCAGTGTGTCTCTACGATTTC 604
||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 451 AGATTCTCGGATCTAAACCGACCCGAATCCGAATGTTGTGCAGTGTGTCTCTACGATTTC 510
Query 605 GAGAACGACGACGAGATCCGACGGCTGACGAATTGT-CGACATATATTTCATCGGGGATG 663
||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 511 GAGAAAGACGACGAGATCCGACGGCTGACGAATTGTACT-CATATATTCCATCGGGGATG 569
Query 664 TTTGGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTCGTACACAGTT 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 570 TTTGGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTCGTACGCAGTT 629
Query 724 TATACCTGATCATCTTCAACTGGAGTTTAATCAAAGGCTCTGGTCTCAATCTTCTGCTGT 783
||||||||||||||| |||||||||||||||||||| || |||||| ||||||||| |
Sbjct 630 TATACCTGATCATCTGCAACTGGAGTTTAATCAAAGACTTTGGTCTGAATCTTCTGGAG- 688
Query 784 TTCTTCTCAACTTCTTGATGAATCATCATCT--T-AGGACGTATTAAATCTTT 833
||||||||||||| ||||||||||||||| | ||||| ||||||||||||
Sbjct 689 --CTTCTCAACTTCTAGATGAATCATCATCTAATTAGGACATATTAAATCTTT 739
> Ahg947578 jgi|Araly1|947578|scaffold_703807.1
Length=572
Score = 206 bits (111), Expect = 4e-52
Identities = 192/229 (84%), Gaps = 14/229 (6%)
Strand=Plus/Plus
Query 518 CTAGCCGGAGAGATGTTACCGGTTGTTC-GATTCTCGGATATAAACCGA-CCGGA----- 570
||||| ||||| || ||||| ||| || |||||||||| |||||||| |||||
Sbjct 259 CTAGCAGGAGAAATCTTACCCGTT-ATCAGATTCTCGGAGCTAAACCGACCCGGATTCGG 317
Query 571 ATCC-G---AG--TGTTGCGCAGTGTGTCTCTACGATTTCGAGAACGACGACGAGATCCG 624
|||| | || || ||||| ||||| ||| |||| ||||||||||| |||||||||||
Sbjct 318 ATCCGGATCAGATTGCTGCGCGGTGTGCCTCCACGAGTTCGAGAACGAAGACGAGATCCG 377
Query 625 ACGGCTGACGAATTGTCGACATATATTTCATCGGGGATGTTTGGACCGTTGGATGATGGG 684
||||||||||||||| | ||| |||||||||||| | |||||||||||||||||||||||
Sbjct 378 ACGGCTGACGAATTGCCAACACATATTTCATCGGAGCTGTTTGGACCGTTGGATGATGGG 437
Query 685 TTATAATCAGATGACGTGTCCACTTTGTCGTACACAGTTTATACCTGAT 733
|||||||||||||||||||||||||||| | || | |||||| ||||||
Sbjct 438 TTATAATCAGATGACGTGTCCACTTTGTAGGACGCCGTTTATTCCTGAT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5