BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63850.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315042 jgi|Araly1|315042|fgenesh1_pm.C_scaffold_2000075 2671 0.0
> Ahg315042 jgi|Araly1|315042|fgenesh1_pm.C_scaffold_2000075
Length=1647
Score = 2671 bits (1446), Expect = 0.0
Identities = 1581/1648 (96%), Gaps = 2/1648 (0%)
Strand=Plus/Plus
Query 1 ATGGATTACTCTACGGCTACGACGACGGCGGGGAACGGTTACAGTTCGCCGCGTGACTCT 60
|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct 1 ATGGATTACTCTACGGCTACAACGACGGCGGCGAATGGTTACAGTTCGCCGCGTGACTCT 60
Query 61 TCTTTCCCTTCGAGCTTCACTAAGTTCAACTCCGCTTTAACGGCAGGTCTTCTAAATCCA 120
|||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 61 TCTTTCCCTTCGAGTTTCACTAAGTTCAACTCCGCTTTAACGGCGGGTCTTTTAAACCCG 120
Query 121 ATGTCTCCTCCTCCGCCTCCGGCGATGCACGACAAGACACGATCAAGTCCGACGCTGTTC 180
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 ATGTCTCCTCCGCCGCCTCCGGCGATGCTCGACAAGACACGATCAAGTCCGACGCTGTTC 180
Query 181 GAAATGATGGCTAGTGAAGCTGATACCATAGGGAAAGTTCCAGTTCAGATCCATAACGGT 240
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 181 GAAATGATGGCTAGTGAAGCTGATACCATCGGGAAAGTTCCGGTTCAGATCCATAACGGC 240
Query 241 GTGCTTCCATCTCCGTCGTCGTCTTCATCGTCTTCTTCTGCGGCGGCTACGGCTGCGAGG 300
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 241 GTGCTTCCATCTCCGTCGTCGTCTTCATCGTCTTCTTCGGCGGCTGCTACGGCTGCGAGG 300
Query 301 ACGACGAATGTGAATCATCTTGTTATTTCAGCTCAGGATAAGCAAGCGCTTGCGATGCAA 360
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGACGAATGTGACTCATCTCGTCATTTCAGCTCAGGATAAGCAAGCGCTTGCGATGCAA 360
Query 361 CGGATTTCGGATCTTCTGGTGATTCGGAGCCCCGGGAATCAGTTCAATGACCCGAATTCG 420
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 361 CGTATTTCGGATCTTCTGGTGATTCGGAGCCCCGGGAATCAGTTCAACGATCCGAATTCG 420
Query 421 AGTGATGTGAAGCTGACTCTGAGCTCTAAAGATGGGATTAGTATCACCATGTGTGTTCAT 480
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AGTGATGTGAAACTGACTCTTAGCTCTAAAGATGGGATTAGTATCACCATGTGTGTGCAT 480
Query 481 AGGCAGATTCTTGTAGCTCACAGTAGGTTTTTCGCTATGAAATTGTCGGATCGATGGTCT 540
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 481 AGGCAGATTCTTGTAGCTCACAGTAGATTTTTCGCTATGAAATTATCGGATCGGTGGTCT 540
Query 541 AAACAGCAGCTGCCGCCGTCGTCTTCTCCGTACATTGTTGAGATCTCAGATTGTGATGAC 600
|| |||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 AAGCAGCAGTTGCCTCCGGCGTCTTCTCCGTACATTGTTGAGATCTCGGATTGTGATGAC 600
Query 601 GTTGAGGTGTATATTGAGACGTTGATGCTGATGTACTGCAGAGATCTAAGGAAGAAGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTGAGGTGTATATTGAGACGTTGATGCTGATGTACTGCAGAGATCTAAGGAAGAAGATG 660
Query 661 ATGAGACATGATGTTTCTAGGGTTCTTGGTATTTTGAAGGTTTCAGCAGCAATTGGGTTT 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGAGACAAGATGTTTCTAGGGTTCTTGGTATTTTGAAGGTTTCAGCAGCAATTGGGTTT 720
Query 721 GATGCTGGAGTGCTTTCATGTCTGGAGTACTTGGAAGCAGCACCATGGTCAGAGGATGAA 780
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 721 GATGCTGGAGTACTTTCATGTTTGGAGTACTTGGAAGCAGCACCATGGTCAGAAGATGAA 780
Query 781 GAATACAGGATTGCTTCTTTGTTGTCTGAGCTACACCTTGAAAACGTTGGGGCAACTGAA 840
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 781 GAATACAGGATTGCTTCTTTGTTGTCTGAGCTACACCTTGAAAACGTTGGTGCGACGGAG 840
Query 841 GTTTTGAGAA-GAGTTTCTGTAGAAGCTAGCAATGGGAATAACGGGAGTAACGGTGGGAG 899
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 GTTTTGAGAAGGA-TTTCTGTAGAAGCTAGCAATGGGAGTAACGGGAGTAACGGTGGGAG 899
Query 900 CAATGACGAGGTGCTTTTGAATCTTTTGCATATTGTTCTTGAGGGAAAAGATGAGAAAGC 959
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAACGATGAGGTGCTTTTGAATCTTTTGCATATTGTTCTTGAGGGAAAAGATGAGAAAGC 959
Query 960 AAGGCGTGATATGAAAACACTTGTTTCCAAAATGCTTAGAGAGAACTCGTCTGGAAATGA 1019
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAGGCGTGACATGAAAACCCTTGTTTCCAAAATGCTTAGAGAGAACTCGTCTGGAAATGA 1019
Query 1020 TCTTAGGAAAGAGTCGTTGTACTTGGCTTGTGATGGGTGTTTGCATAAGCTTAAGCGGCA 1079
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 TCTTAGGAAAGAGTCGTTGTACTTGGCTTGTGACGGGTGTTTGCATAAGCTTAAGCGGCA 1079
Query 1080 GTTTCTACAAGCAGCAGAGTCGGATTTGGAGAATGTTGACCAGATAGCAAGACAAGCGGA 1139
|||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 1080 GTTTCTGCAAGCAGCAGAGTTGGATTTGGAGAATGTAGATCAGATAGCAAGACAAGCGGA 1139
Query 1140 TAATCTGCATTGGATTTTGGATATTTTGATAGATAGACAAATCGCAGAGGATTTTATTGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAATCTGCATTGGATTTTGGATATTTTGATAGATAGACAAATCGCAGAGGATTTTATTGT 1199
Query 1200 GATGTGGGCTTCTCTTTCTGAGCTATCCGAGGTACATTCTAAGGTCCCTGTTGTTCACAG 1259
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 GATGTGGGCTTCTCTCTCTGAGCTATCCGAGGTGCATTCTAAGGTCCCTGTTGTTCACAG 1259
Query 1260 GTTTGAGATTAGCAGAGTAACAGCGAGGATCTTTGTTGGAATTGGAAAGGGACAAATTCT 1319
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1260 GTTTGAGATTAGCAGAGTAACAGCAAGGATCTTTGTCGGAATTGGAAAGGGACAAATTCT 1319
Query 1320 GACACCGAAAGAAGTGAGGTGTTTGCTGCTGAGGAATTGGTTGACACCTTTCTATGATGA 1379
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1320 GACACCGAAAGAAGTGAGGTGTTTGCTGTTGAGGAATTGGTTGACACCTTTCTATGATGA 1379
Query 1380 TTTTGGGTGGATGAGGAGAGCTTCGAAAGGGCTTGATCGGTATTTAATCGAGGATGGTTT 1439
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1380 TTTTGGGTGGATGAGGAGAGCTTCGAAAGGGCTTGATAGGTATTTAATCGAGGACGGTTT 1439
Query 1440 AAGCAATACCATTCTGACTCTTCCTCTTGCTTGGCAACAAGAGTTTTTCCTAGCTTGGTT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAGCAATACCATTCTGACTCTTCCTCTTGCTTGGCAACAAGAGTTTTTCCTAGCTTGGTT 1499
Query 1500 TGATCGGTTCTTGAACTCTAATGAAGACTGTCCTAATATCCAGAGAGGGTTCGAAGTTTG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGATCGGTTCTTGAACTCTAATGAAGACTGTCCTAATATCCAGAGAGGGTTCGAAGTTTG 1559
Query 1560 GTGGAGACGGGCGTTTTGGAGACGGAAAGAACAGAGTCAAGAGCCTGCTCGGCTAAGAGT 1619
|||||||||||| || ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1560 GTGGAGACGGGCATTCTGGAGACGGAAAGAACAAAGTCAAGAGCCTGCCCGGCTAAGGGT 1619
Query 1620 CACCGCTTCAGCCACTGAAAACTCCTAA 1647
||| |||||||||||||| |||||||||
Sbjct 1620 CACAGCTTCAGCCACTGATAACTCCTAA 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5