BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63855.3 Length=792 Score E Sequences producing significant alignments: (Bits) Value Ahg907025 jgi|Araly1|907025|Al_scaffold_0002_106 815 0.0 > Ahg907025 jgi|Araly1|907025|Al_scaffold_0002_106 Length=585 Score = 815 bits (441), Expect = 0.0 Identities = 524/563 (93%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 26 ACGACGACGACGATTTCTCAGCATAACTTCTATGGTGCTGGAGATTCGGAAACTTGC-AT 84 ||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| | || Sbjct 7 ACGACGACGACGATTTCCCAGCATGATTTCTATGGTGATGGAGATTCGGAAACTT-CAAT 65 Query 85 TTC--TA----TTATTGAGAATTTGAAGGAAGAGTATGGATTGTTTGTTTGGCCTTGTAG 138 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 TTCTATATCTGTTATTGAGAATTTGAAGGAAGAGTATGGATTGTTTGTTTGGCCTTGTAG 125 Query 139 CGTTATCCTCGCTGAGTATGTTTGGCAACACAGATCTCGATTTCGTGATTCTTCGATACT 198 |||||||||||||||||||||||||||||| |||||||||||||| |||||||| | || Sbjct 126 CGTTATCCTCGCTGAGTATGTTTGGCAACAGAGATCTCGATTTCGCCATTCTTCGGTTCT 185 Query 199 CGAGCTAGGAGCTGGTACTTCCTTGCCTGGTTTAGTAGCTGCAAAGGTTGGGGCTAATGT 258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TGAGCTAGGAGCTGGTACTTCCTTGCCTGGTTTAGTAGCTGCAAAGGTTGGGGCTAATGT 245 Query 259 CACTCTTACTGATGATGCAACTAAACCAGAGGTTTTGGATAATATGAGAAGAGTCTGTGA 318 ||| |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| Sbjct 246 CACACTTACTGATGATGCAAGTAAACCAGAGGTTCTGGACAATATGAGAAGAGTCTGTGA 305 Query 319 GCTTAACAAGCTGAACTGTAATGTGTTGGGTCTCACCTGGGGTGTGTGGGATGCACCGAT 378 |||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| || Sbjct 306 GCTTAACAAGCTAAACTGTAATGTGATGGGTCTCACCTGGGGAGTGTGGGATGCACCAAT 365 Query 379 ACTCGACCTGCGACCAAACATTATACTTGGGGCTGATGTTTTATATGATTCAAGTGGTTC 438 | | ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 ATTTGACCTGCAACCTAACATTATACTTGGGGCTGATGTTTTATATGATTCAAGTGGTTA 425 Query 439 TGGGCATCATCTAATCGAGTTCCTGATGGTAAAATGGGGACTAAAGTGTGTTAAACTTCT 498 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 426 TGGGCATCATCTAATCGAGTTCCTGATGGTAAAATGGGGCCTAAAGTGCGTTAAACTTCT 485 Query 499 GGATGGCTTCTCATTCTTGCCCTCTCAA-AAGGCATCTGTACTTAGTGGAAACATTCAGT 557 ||||||||||||||||||||||| | | ||||| ||| ||||||||||||||||||||| Sbjct 486 AGATGGCTTCTCATTCTTGCCCTC-CTACAAGGCTTCTTTACTTAGTGGAAACATTCAGT 544 Query 558 TGGTTGAGATCGTATTGAGTTCC 580 ||||||||||||||||||||||| Sbjct 545 TGGTTGAGATCGTATTGAGTTCC 567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29240277339 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5