BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63855.3
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907025 jgi|Araly1|907025|Al_scaffold_0002_106 815 0.0
> Ahg907025 jgi|Araly1|907025|Al_scaffold_0002_106
Length=585
Score = 815 bits (441), Expect = 0.0
Identities = 524/563 (93%), Gaps = 10/563 (2%)
Strand=Plus/Plus
Query 26 ACGACGACGACGATTTCTCAGCATAACTTCTATGGTGCTGGAGATTCGGAAACTTGC-AT 84
||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| | ||
Sbjct 7 ACGACGACGACGATTTCCCAGCATGATTTCTATGGTGATGGAGATTCGGAAACTT-CAAT 65
Query 85 TTC--TA----TTATTGAGAATTTGAAGGAAGAGTATGGATTGTTTGTTTGGCCTTGTAG 138
||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TTCTATATCTGTTATTGAGAATTTGAAGGAAGAGTATGGATTGTTTGTTTGGCCTTGTAG 125
Query 139 CGTTATCCTCGCTGAGTATGTTTGGCAACACAGATCTCGATTTCGTGATTCTTCGATACT 198
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||
Sbjct 126 CGTTATCCTCGCTGAGTATGTTTGGCAACAGAGATCTCGATTTCGCCATTCTTCGGTTCT 185
Query 199 CGAGCTAGGAGCTGGTACTTCCTTGCCTGGTTTAGTAGCTGCAAAGGTTGGGGCTAATGT 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TGAGCTAGGAGCTGGTACTTCCTTGCCTGGTTTAGTAGCTGCAAAGGTTGGGGCTAATGT 245
Query 259 CACTCTTACTGATGATGCAACTAAACCAGAGGTTTTGGATAATATGAGAAGAGTCTGTGA 318
||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct 246 CACACTTACTGATGATGCAAGTAAACCAGAGGTTCTGGACAATATGAGAAGAGTCTGTGA 305
Query 319 GCTTAACAAGCTGAACTGTAATGTGTTGGGTCTCACCTGGGGTGTGTGGGATGCACCGAT 378
|||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| ||
Sbjct 306 GCTTAACAAGCTAAACTGTAATGTGATGGGTCTCACCTGGGGAGTGTGGGATGCACCAAT 365
Query 379 ACTCGACCTGCGACCAAACATTATACTTGGGGCTGATGTTTTATATGATTCAAGTGGTTC 438
| | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ATTTGACCTGCAACCTAACATTATACTTGGGGCTGATGTTTTATATGATTCAAGTGGTTA 425
Query 439 TGGGCATCATCTAATCGAGTTCCTGATGGTAAAATGGGGACTAAAGTGTGTTAAACTTCT 498
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 426 TGGGCATCATCTAATCGAGTTCCTGATGGTAAAATGGGGCCTAAAGTGCGTTAAACTTCT 485
Query 499 GGATGGCTTCTCATTCTTGCCCTCTCAA-AAGGCATCTGTACTTAGTGGAAACATTCAGT 557
||||||||||||||||||||||| | | ||||| ||| |||||||||||||||||||||
Sbjct 486 AGATGGCTTCTCATTCTTGCCCTC-CTACAAGGCTTCTTTACTTAGTGGAAACATTCAGT 544
Query 558 TGGTTGAGATCGTATTGAGTTCC 580
|||||||||||||||||||||||
Sbjct 545 TGGTTGAGATCGTATTGAGTTCC 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5