BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63900.2
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474968 jgi|Araly1|474968|fgenesh2_kg.2__98__AT1G63900.1 2303 0.0
> Ahg474968 jgi|Araly1|474968|fgenesh2_kg.2__98__AT1G63900.1
Length=1553
Score = 2303 bits (1247), Expect = 0.0
Identities = 1429/1514 (94%), Gaps = 23/1514 (2%)
Strand=Plus/Plus
Query 163 TTCTTTCACTGCTTCTAGTTTCTAATTCTTCAAACTCTTCCTCGATTCATACTCATAACT 222
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 59 TTCTTTCACTGCTTCTAGTGTCTAATTCTTCAAACTCTTCCTCGATTCATACTCATAGCT 118
Query 223 CTCATTAGCTAATTTCGCATGATCTTCTTCCATCTCTCTGTGTTCTAAATCCAGATTCGT 282
||| |||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 119 CTCGTTAGCTAATTTCTCATGATCTTCTTCCATCGCTCTGTATTCT-AATCCAGATTCGT 177
Query 283 TTCACTCCCATCTCTATTTCATTCAA-TTCGCTGCATCCAGATTCAAAACC--TACCTCT 339
| ||| |||||||||||||||||| ||| || ||||||||||| ||| |||||||
Sbjct 178 AT-GCTCTCATCTCTATTTCATTCAATTTCACT-CATCCAGATTC--GACCATTACCTCT 233
Query 340 ATCTCTCTGCTCATCAATAACTTCAAAGGTATTGTTGTTCTTCTGCAAACAAGTAAGAGT 399
|||||||| ||||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 234 ATCTCTCTACTCATCAATCACTTCAAAGGTATTGTTCTTCTTCTTCAAACAAGTAAGAGT 293
Query 400 GACTTCAGAGTCTGATGATTCCTTGGGGTGGAGTTACTTGCTGCCTCAGCGCCGCTGCTC 459
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 294 GACTTGAGAGTCTGATGATTCCTTGGGGTGGAGTTACTTGCTGCCTCAGCGCCGCCGCTC 353
Query 460 TTTATCTTCTCGGCCGGAGTAGTGGCAGGGATGCTGAAGTACTCGAAACAGTCACTAGGG 519
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 354 TTTATCTTCTCGGCCGGAGTAGTGGCAGGGATGCTGAAGTACTCAAAACTGTCACTAGGG 413
Query 520 TTAATCAGCTCAAGGAGTTAGCTCAATTGCTAGAATTAGATAGCAAGATTCTGCCTTTCA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTAATCAGCTCAAGGAGTTAGCTCAATTGCTAGAATTAGATAGCAAGATTCTGCCTTTCA 473
Query 580 TTGTTGCGGTATCAGGAAGAGTCGGCTCTGAGACACCTATCAAATGCGAGCATAGTGGCA 639
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 474 TTGTTGCGGTATCAGGAAGAGTCGGCTCTGAGACACCTATCAAGTGTGAGCATAGTGGCA 533
Query 640 TACGCGGTGTTATTGTTGAAGAAACGGCGGAACAACATTTCCTGAAACATAATGAGACGG 699
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 534 TTCGCGGTGTTATTGTTGAAGAAACGGCTGAACAACATTTTCTGAAACATAATGAGACGG 593
Query 700 GTTCTTGGGTACAAGATAGTGCGTTGATGCTATCAATGAGCAAAGAGGTTCCTTGGTTTC 759
|||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 594 GTTCTTGGGTGCAAGATAGTGCATTGATGTTATCAATGAGCAAGGAGGTTCCTTGGTTTC 653
Query 760 TGGACGATGGGACAAGCCGTGTCCATGTAATGGGAGCTCGTGGTGCGACGGGTTTTGCCT 819
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 654 TGGACGATGGGACAAGTCGTGTCCATGTAATGGGAGCTCGTGGTGCCACTGGTTTTGCCT 713
Query 820 TGACTGTTGGTAGTGAAGTTTTTGAAGAGTCAGGACGCTCGCTTGTACGAGGAACACTTG 879
|||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 714 TGACTGTTGGAAGTGAAGTATTTGAAGAGTCAGGGCGGTCGCTTGTACGAGGAACACTTG 773
Query 880 ATTATCTTCAAGGACTTAAGATGCTTGGAGTTAAGCGCATTGAGCGTGTTCTTCCAACTG 939
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 774 ATTATCTTCAAGGACTTAAGATGCTTGGAGTAAAGCGCATTGAGCGTGTTCTTCCAACTG 833
Query 940 GAATACCGCTAACAATTGTTGGTGAGGCTGTCAAGGACGATATTGGAGAATTCAGGATTC 999
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 834 GAATACCACTAACAATTGTTGGTGAGGCTGTCAAGGACGATATTGGCGAATTCAGGATTC 893
Query 1000 AAAAACCTGACAGGGGCCCTTTCTACGTCTCTTCTAAATCACTCGATCAGCTCATTTCTA 1059
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 894 AAAAACCTGACAGGGGACCTTTCTACGTCTCTCCTAAATCACTCGATCAGCTCATTTCTA 953
Query 1060 ATTTGGGAAAATGGTCAAGGTTGTACAAATATGCCTCCATGGGTTTTACTGTTCTTGGTG 1119
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 954 ATTTGGGAAAATGGTCAAGGTGGTACAAATATGCCTCCATGGGTTTTACTGTTTTTGGTG 1013
Query 1120 TGTTCCTAATTACGAAGCATGTCATTGACTCTGTTCTAGAGAGAAGACGGCGGAGACAGT 1179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1014 TGTTCCTAATTACGAAGCATGTCATTGATTCTGTTCTAGAGAGAAGACGGCGGAGACAGT 1073
Query 1180 TACAAAAAAGCTGTTTTTGCAGAGTGCTTGACGCAGCAGCAAAGAGAGCTGAGCTAGAGA 1239
|||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 1074 TACAAAAAAG----------AG--TGCTTGATGCAGCAGCAAAGAGAGCTGAGCTAGAGA 1121
Query 1240 GTGAAGGTTCAAACGGGACACGTGAGAGCATTTCAGATTCTACCAAGAAAGAAGACGCTG 1299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GTGAAGGTTCAAACGGGGCACGTGAGAGCATTTCAGATTCTACCAAGAAAGAAGACGCTG 1181
Query 1300 TTCCTGATCTCTGTGTGATATGCCTAGAGCAGGAGTACAACGCTGTGTTTGTCCCGTGTG 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TTCCTGATCTCTGTGTGATATGCCTAGAGCAGGAGTACAACGCTGTGTTTGTCCCGTGTG 1241
Query 1360 GTCATATGTGCTGCTGCACCGCATGCTCCTCCCACTTGACCAGCTGTCCACTTTGTCGGA 1419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GTCATATGTGCTGCTGCACTGCATGCTCCTCCCACTTGACCAGCTGTCCACTTTGTCGGA 1301
Query 1420 GACGAATAGATCTGGCGGTTAAGACATATCGTCACTGAACAACAACTCAGGCCTCAGAAA 1479
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1302 GACGAATAGATCTGGCGGTTAAGACATATCGTCACTGAACAACAACTCAGGCTTCCGAAA 1361
Query 1480 CATTCTCTACTTGAGTCTTGTCTGTAAATACCGCAAAATCAAAACATTACACAGTTTAG- 1538
||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1362 CATTCTCTACTCGAGTCTTGTCTGTAAATACCGCAAGATGAAAACATTACA--GTTTAGG 1419
Query 1539 CGTTCGATATTCCCTTTGGTTTGATTTCGACAACAAAACATTTTGAATTATATAGAAACA 1598
||||| || | |||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1420 CGTTCAATCTCCCCTTTTGTTTGATTTCGAGAACAAAACATTTTGAATTATATAGAAACA 1479
Query 1599 TAAGGTGTTTACTCGATTTGCAAAACAGTACATTCGTGTTTACTTATTCGTGTTGTTGCC 1658
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 1480 TAAGGTGTTTACTCGATTTGCAGAACAGTACATTCGTGTTTACTTAACCGTGTCGCTGCT 1539
Query 1659 AATGCCATGAGGTG 1672
||||||||||||||
Sbjct 1540 AATGCCATGAGGTG 1553
Score = 100 bits (54), Expect = 3e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 78 TGAGAATATTGAGAGAGATCGAAGCAAAGGATCATTCAATTCCAACCCTCTGAATCTTTT 137
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1 TGAGAATATTGAGAGAGATCGAAGCAAAGGATCATTCAAATCCAACACTCTGAATCTTTT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5