BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63910.1
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315039 jgi|Araly1|315039|fgenesh1_pm.C_scaffold_2000072 1447 0.0
Ahg478795 jgi|Araly1|478795|fgenesh2_kg.3__1496__AT3G13890.1 134 2e-30
Ahg944399 jgi|Araly1|944399|scaffold_700628.1 76.8 4e-13
Ahg490626 jgi|Araly1|490626|fgenesh2_kg.7__59__AT4G38620.1 60.2 4e-08
> Ahg315039 jgi|Araly1|315039|fgenesh1_pm.C_scaffold_2000072
Length=1119
Score = 1447 bits (783), Expect = 0.0
Identities = 1018/1129 (90%), Gaps = 26/1129 (2%)
Strand=Plus/Plus
Query 150 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCGGAA 209
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCAGAA 60
Query 210 GAAGATGAGAAGCTTATTAGATATATCACAACTCATGGCTATGGATGTTGGAGTGAAGTC 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATGAGAAGCTTATTAGATATATCACAACTCATGGCTATGGATGTTGGAGTGAAGTC 120
Query 270 CCTGAAAAAGCAGGGCTTCAAAGATGTGGAAAAAGTTGTAGATTGCGATGGATAAACTAT 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTGAAAAAGCAGGGCTTCAAAGATGTGGAAAAAGTTGTAGATTGCGATGGATAAACTAT 180
Query 330 CTTCGACCTGATATCAGGAGAGGAAGGTTCTCTCCAGAAGAAGAGAAATTGATCATAAGC 389
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCGACCTGATATCAGAAGAGGAAGGTTCTCTCCAGAAGAAGAGAAATTGATCATAAGT 240
Query 390 CTTCATGGAGTTGTGGGAAACAGGTGGGCTCATATAGCTAGTCATTTACCGGGAAGAACA 449
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 241 CTTCATGGAGTTGTGGGAAACAGGTGGGCTCATATAGCTAGTCATTTACCCGGACGAACG 300
Query 450 GATAACGAGATTAAAAACTATTGGAATTCATGGATTAAGAAAAAGATACGAAAACCGCAC 509
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATAACGAGATAAAAAACTATTGGAATTCATGGATTAAGAAAAAGATACGAAAACCGCAC 360
Query 510 CATCATTACAGTCGTCATCAACCGTCAGTAACTACTGTGACATTGAATGCGGAC-ACTAC 568
|| ||||||| |||||||||||||||| |||||||||||||| |||| | |||| | | |
Sbjct 361 CACCATTACAATCGTCATCAACCGTCAATAACTACTGTGACAATGAACGTGGACGA-TGC 419
Query 569 ATCGATTGCCACTACCATCGAGGCCTCTACCACCACAAC-ATCGACTATCGATAACTTAC 627
| | |||||||||||| | | |||||||||| | | | ||| ||||| |||||| |||
Sbjct 420 ACCTATTGCCACTACCGTT-A--CCTCTACCACTA-ATCCATCCACTATTGATAACCTAC 475
Query 628 ATTTTGACGGTTTCACTG-ATTCTCCTAA-CCAATTAAATTTCACCAATGATCAAGAAAC 685
||||||| ||||||| || ||||| ||| ||| ||||||||| |||| |||||||||||
Sbjct 476 ATTTTGATGGTTTCA-TGGATTCTG-TAAACCAGTTAAATTTCGCCAACGATCAAGAAAC 533
Query 686 TAATATAAAGATTCAAGAAACTTTTTTCTCCCATAAACCTCCTCTCTTCATGGTAGACAC 745
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 534 TAATATAAAGATTCAAGAAACCCTTTTCTCCCATAAACCTCCTCTCTTCATGGTGGACAC 593
Query 746 AACACTTCCTATCCTAGAAGGAATGTTCTCTGAAAACATCATCACAAACAATAACAAGAA 805
| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 594 AGCGCTTCCTATCCTAGAAGGAATGTTCTCTCAAAACATCATCACAAACAATAACAACAA 653
Query 806 CAATGATCA-TGATGACACGCAAAGAGGAGGAAGAGAAAATGTTTGTGAACAAGCATTTC 864
|| | || | |||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 654 AAACAA-CAATCATGACACGCAAAGAGGAGGAAGAGGAAACATTTGCGAACAAGCATTTC 712
Query 865 TAACAACTAACACGGAAGAATGGGATATGAATCTTCGTCA----G--CAA-GAG--CCGT 915
||||||||| ||| |||||||||||||||||||||| ||| | ||| ||| ||||
Sbjct 713 TAACAACTAGCACAGAAGAATGGGATATGAATCTTCCTCAACAAGAACAACGAGAACCGT 772
Query 916 TTCAAGTTCCTACACTGGCGTCACATGTGTTCAACAACTCTTCCAATTCAAATATTGACA 975
|||||||||||||| ||||||| ||| ||||||| |||||| ||||||||||||| || |
Sbjct 773 TTCAAGTTCCTACAATGGCGTCCCATTTGTTCAATAACTCTACCAATTCAAATATCGAGA 832
Query 976 CGGTTATAAGTTATAATCTACCGGCGCTAATAGAGGGAAATGTCGATAACATCGTCCATA 1035
| |||||||||||||| ||||||| || |||||| |||||| |||||||| |||| |
Sbjct 833 CAACTATAAGTTATAATCCACCGGCGATACTAGAGGAAAATGTGGATAACATTGTCCC-A 891
Query 1036 AT-GAAAACAGCAATGTCCAAGATGGAGAAATGGCGTCCACATTCGAATGTTTAAAGAGG 1094
|| ||||| |||||||||||||||||| | ||||| || | ||||||||||||||||||
Sbjct 892 ATTGAAAATAGCAATGTCCAAGATGGATATATGGCATCAAGTTTCGAATGTTTAAAGAGG 951
Query 1095 CAAGAACTAAGCTATGATCAATGGG-ACGATTCACAACAATGCTCTAACTTTTTCTTTTG 1153
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 952 CAAGACCTAAGCTATGATCAATGGGTA-GATTCACAACAATGCTCTAACTTTTTCTTCTG 1010
Query 1154 GGACAACCTTAATATAAACGTGGAAGGTTCATCTCTTGTTGGAAACCAAGACCCATCAAT 1213
|||||||||||| |||||| |||| |||||||||||| ||||||||||||| |||||||
Sbjct 1011 GGACAACCTTAACATAAACATGGACGGTTCATCTCTTCTTGGAAACCAAGATTCATCAAT 1070
Query 1214 GAATTTGGGATCATCTGCCTTATCTTCTTCTTTCCCTTCTTCGTTTTAA 1262
|| ||||||||||||||||||||||| ||||| || ||| | ||||||
Sbjct 1071 GACCTTGGGATCATCTGCCTTATCTTCATCTTTTCCGTCTCCATTTTAA 1119
> Ahg478795 jgi|Araly1|478795|fgenesh2_kg.3__1496__AT3G13890.1
Length=1107
Score = 134 bits (72), Expect = 2e-30
Identities = 273/363 (75%), Gaps = 42/363 (12%)
Strand=Plus/Plus
Query 150 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCGGAA 209
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGTCATCACTCGTGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCCGAA 60
Query 210 GAAGATGAGAAGCTTATTAGA-TATATCACAACTCAT--GGCTATGGATGTTGGAG-T-- 263
||||| || ||||| || | | || |||| | |||| ||| ||||||||||||| |
Sbjct 61 GAAGACGAAAAGCTCATCA-ACTACATCA-AT-TCATATGGCCATGGATGTTGGAGCTCT 117
Query 264 G-----AAG--T-C---C----CTGA-A-A-A-AGC-A-GGGCTT-CAAAGATGTGGAAA 301
| || | | | || | | | | | | | ||| || || |||||||||||
Sbjct 118 GTTCCCAAACATGCAGGCATTTCT-ACACATATATCTATGGGTTTGCAGAGATGTGGAAA 176
Query 302 AAGTTGTAGATTGCGATGGATAAACTATCTTCGACCTGATATCAGGA-GAGGAAGGTTCT 360
||||||||||| |||||||||| ||||| ||||||||| | | | | ||||| ||||
Sbjct 177 GAGTTGTAGATTAAGATGGATAAATTATCTACGACCTGATCTTAA-ACGTGGAAGCTTCT 235
Query 361 CTCCAGAAGAAGA-GAAATTGATCATA-AGCCTTCATGG-AGTTGTGGGAAACAGGTGGG 417
|||| |||||| | || ||||| ||| |||| | | || | || ||||| ||||
Sbjct 236 CTCCTCAAGAAGCTGCTCTT-ATCATTGAGC-TTCACAGCA-TTCTTGGTAACAGATGGG 292
Query 418 CTCATATAGCTAGTCATTTACCGGGAAGAACAGATAACGAGATTAAAAACTAT-TGGAAT 476
| || || |||| ||| |||| |||||||||||||||||| | || || | | ||||||
Sbjct 293 CACAAATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATT-TCTGGAAT 351
Query 477 TCA 479
|||
Sbjct 352 TCA 354
> Ahg944399 jgi|Araly1|944399|scaffold_700628.1
Length=877
Score = 76.8 bits (41), Expect = 4e-13
Identities = 147/197 (75%), Gaps = 12/197 (6%)
Strand=Plus/Plus
Query 285 CTTCAAAGATGTGGAAAAAGTTGTAGAT-TGCGATGGATAAACTATCTTCGACCTGATAT 343
|||||| | || || ||||| ||| | | | || ||||| |||||||| || |||||| |
Sbjct 156 CTTCAACGTTGCGGCAAAAGCTGTCG-TCTCCGGTGGATTAACTATCTCCGGCCTGATCT 214
Query 344 CAGGAGAGG-AAGGTTCTCTCC-AGAAGAAGAGAAAT-TGATCAT-AAGCCTTCATGGAG 399
|| ||| || || ||| | || |||||||| || | ||||| || || ||| |
Sbjct 215 CAAGAGGGGTAA-TTTCAC-CCTCGAAGAAGA-TGATCTCATCATCAA-ACTCCATAGCC 270
Query 400 TTGTGGGAAACAGGTGGGCTCATATAGCTA-GTCATTTACCGGGAAGAACAGATAACGAG 458
|| | || |||| |||| ||| ||| || | | | ||||||||||||||||||||||||
Sbjct 271 TTCTCGGCAACAAGTGGTCTCTTATCGCGACGAGA-TTACCGGGAAGAACAGATAACGAG 329
Query 459 ATTAAAAACTATTGGAA 475
||||| || || |||||
Sbjct 330 ATTAAGAATTACTGGAA 346
> Ahg490626 jgi|Araly1|490626|fgenesh2_kg.7__59__AT4G38620.1
Length=1286
Score = 60.2 bits (32), Expect = 4e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 435 TTACCGGGAAGAACAGATAACGAGATTAAAAACTATTGGAA 475
||||||||||||||||||||||||||||| || || |||||
Sbjct 626 TTACCGGGAAGAACAGATAACGAGATTAAGAATTACTGGAA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54126238145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5