BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63930.1 Length=1443 Score E Sequences producing significant alignments: (Bits) Value Ahg474967 jgi|Araly1|474967|fgenesh2_kg.2__97__AT1G63930.1 2401 0.0 > Ahg474967 jgi|Araly1|474967|fgenesh2_kg.2__97__AT1G63930.1 Length=1433 Score = 2401 bits (1300), Expect = 0.0 Identities = 1388/1431 (97%), Gaps = 3/1431 (0%) Strand=Plus/Plus Query 7 tcttcttcttctttctCCTTCAAACAAATCATGAGACCTGCGCAAGATAATCAAGGCTCG 66 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTTCTTCTTCTTCCTCCTTCAAACAAATCATGAGACCTGCGCAAGATAATCAAGGCTCG 60 Query 67 TTCCTTGGCCGGATTAGTATCCGTCGCAACCAATTCGTCGACGTCAACAACGAACAAGAA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCCTTGGCCGGATTAGTATCCGTCGCAACCAATTCGTCGACGTCAACAACGAACAAGAA 120 Query 127 CAAGAAGATCTCGAGCTTTTCCAAAAACACATCGCCGATCGTTTCACCGAGCTTCTTTCT 186 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAAGAAGATCTTGAGCTTTTCCAAAAACACATCGCCGATCGTTTCACCGAGCTTCTTTCT 180 Query 187 CCTCCTCAACCACCACCGTCAGATGAAATTAACACGGTAGCTTCCGTAGCCGCGACGGAG 246 |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| Sbjct 181 CCTCCTCAACCACCACCGTCCGATGAAACAAACACGGTAGCTTCCGTAGCTGCGACGGAG 240 Query 247 CAGATTATGTCCGTGACTTGGCTTCGTAAGCTGATGGATGTTTTCCTCTGTTGCGAAGCT 306 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 CAGATTATGTCCGTGACTTGGCTTCGTAAGCTAATGGATGTTTTCCTCTGTTGCGAAGCT 300 Query 307 GAATTCAAAGCGATTTTGTTAATGGGTCGTGACCCGACCCAGATTTCTAAGCCGCCTTTT 366 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 301 GAATTCAAAGCGATTTTGTTAATGGGCCGTGACCCGACCCAGATTTCTAAACCGCCTTTT 360 Query 367 GACCGGTTAGTTCCTGAAATGTTAGACCGGTCGATTAAAGCGCTTGACATTTGTACCGCC 426 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 361 GACCGGTTAGTTCCTGAAATGTTAGACCGGTCAATTAAAGCGCTTGACATTTGTACCGCC 420 Query 427 GTTGTTAACGGTATCGATTCCGTTAGACATTACCAGCGTTTAGCTGAGATTGCTGTGACG 486 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 421 GTTGTTAACGGAATCGATTCCGTTAGACATTACCAGCGTTTAGCTGAGATTGCTGTTACG 480 Query 487 GCTTTGGAGCAACGTCCGTTAGGTGACGGTAACGTGAGGAGAGCTAAACGCGCGTTGGCG 546 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 481 GCTTTGGAGCAACGTCCGTTAGGTGACGGTAACGTGAGGAGAGCGAAACGCGCGTTGGCG 540 Query 547 AATCTCGTCGTCGCGTTGAGTCTCGAGGATAAAGAGAATGTTAGCGGCGGAGGTGGTGGC 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AATCTCGTCGTCGCGTTGAGTCTCGAGGATAAAGAGAATGTTAGCGGCGGAGGTGGTGGC 600 Query 607 GGCGGCGGAGGGAATAAGACGACGGAGAGATCGTGGTCGTTTGGTCGTCGAAGCGGTGGA 666 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 601 GGCGGCGGAGGGAACAAGACGACGGAGAGATCGTGGTCGTTTGGTCGTCGTAGCGGTGGA 660 Query 667 TCATCGGCGGCGAGTAAAGGAGGAGCAACGATTGGTCAGCTCAAATCGTCGTCGTGGGCG 726 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 661 TCATCGGCGGCGAGTAAAGGAGGAGCGACGATTGGTCAGCTTAAATCGTCGTCGTGGGCG 720 Query 727 GTTGGGAGAAATTGGTCGGCGGCGAAGCAGATCCACGCAATGACAGCGAATCTTACGCCG 786 |||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||| Sbjct 721 GTTGGGAGAAATTGGTCGGCGGCGAAGCAGATCCACGCGATGACGGCGAATCTAACACCG 780 Query 787 CCACGTGGTAACGAAGCGGCGGGATTGCCTCAACCAATGTTTATAATGAGTACGGTGATG 846 |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 781 CCACGTGGCAACGAAGCGGCGGGATTGCCTCAACCGATGTTTATAATGAGCACGGTGATG 840 Query 847 GTTTTCGTAATGTGGGTGCTAACGGCGGCGGTTCCGTGTCAGGAGAGATCAGGATTAGCG 906 || ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 841 GTGTTCGTAATGTGGGTGTTAACGGCGGCGGTTCCGTGTCAGGAGAGATCTGGATTAGCG 900 Query 907 AATCATTTACCAGTGCCGCCGAAACATTTGAATTGGGCTCAGAGTTTGATCGGAATCCAT 966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AATCATTTACCAGTGCCGCCGAAACATTTGAATTGGGCTCAGAGTTTGATCGGAATCCAT 960 Query 967 GAGAAAATCGGAGATGAGTGGAAGAAGAAAGAGAAGAAAGGATCTGCTGGATTGATGGAG 1026 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 961 GAGAAGATCGGCGATGAGTGGAAGAAGAAAGAGAAGAAAGGATCTGCTGGATTAATGGAG 1020 Query 1027 GAGATGACGAGGATGGAGAAGCTAGGTCACTCGTTGATGGAATTCGCAGATGGATTTCAT 1086 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1021 GAGATGACGAGGATGGAGAAGCTTGGTCATTCGTTGATGGAATTCGCAGATGGATTTCAT 1080 Query 1087 TATCCGGCGGAGAAAGATGCTGCTGAATCTGCGGCGGTGCAAGTGGCGGAGATGGCGGAG 1146 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1081 TATCCGGCGGAGAAAGATGCTGCTGAATCTGCGGCGGCGCAAGTGGCAGAGATGGCGGAG 1140 Query 1147 ATATGCAGGAGAATGGAGGAGGAGCTTGTGCCGTTACAGCAACAGATCAGAGAAGTTTTT 1206 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1141 ATATGCCGGAGAATGGAGGAAGAGCTTGTGCCGTTACAGCAACAGATCAGAGAAGTTTTT 1200 Query 1207 CATAGGATCGTGAGGAGTCGTGCGGAGATTCTCGAGGTGTTGGAGCAAGCCGGGAAAGTT 1266 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1201 CATAGGATCGTGAGGAGTCGTGCGGAGATTCTTGAGGTGTTGGAGCAAGCCGGGAAAGTT 1260 Query 1267 TCGGCGCCAGTTGTGTAAAAGTTTTGAATTATTGGGAATCAATTTCGAAGTTTTGTAATT 1326 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1261 TCGGCGCCAGTTGTGTAAAAGTTTTGAATTATTGGGGATCAAATTCGAAGTTTTGTAATT 1320 Query 1327 CTTTGGGGGCTAATAGGATATTTTATTTTCTTGGTTTCGTCTATTGTTGTTTTT-CTATT 1385 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1321 CTTTGGGGGCTAATAGGATATTTTATTTTCTTGGTTTCGTCTATTGTTGTTTTTTCTACT 1380 Query 1386 TATGGTTGGGC-TTTTAGAACTCTGGACAGGCCCATGTCATATGT-TTTCC 1434 ||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 1381 TATGGTTGGGCCTTTTAGAACTCTGGACAGGCCCATGTCATATGTCTTTCC 1431 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53973877165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5