BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63930.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474967 jgi|Araly1|474967|fgenesh2_kg.2__97__AT1G63930.1 2401 0.0
> Ahg474967 jgi|Araly1|474967|fgenesh2_kg.2__97__AT1G63930.1
Length=1433
Score = 2401 bits (1300), Expect = 0.0
Identities = 1388/1431 (97%), Gaps = 3/1431 (0%)
Strand=Plus/Plus
Query 7 tcttcttcttctttctCCTTCAAACAAATCATGAGACCTGCGCAAGATAATCAAGGCTCG 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCTTCTTCTTCCTCCTTCAAACAAATCATGAGACCTGCGCAAGATAATCAAGGCTCG 60
Query 67 TTCCTTGGCCGGATTAGTATCCGTCGCAACCAATTCGTCGACGTCAACAACGAACAAGAA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCTTGGCCGGATTAGTATCCGTCGCAACCAATTCGTCGACGTCAACAACGAACAAGAA 120
Query 127 CAAGAAGATCTCGAGCTTTTCCAAAAACACATCGCCGATCGTTTCACCGAGCTTCTTTCT 186
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAGAAGATCTTGAGCTTTTCCAAAAACACATCGCCGATCGTTTCACCGAGCTTCTTTCT 180
Query 187 CCTCCTCAACCACCACCGTCAGATGAAATTAACACGGTAGCTTCCGTAGCCGCGACGGAG 246
|||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 181 CCTCCTCAACCACCACCGTCCGATGAAACAAACACGGTAGCTTCCGTAGCTGCGACGGAG 240
Query 247 CAGATTATGTCCGTGACTTGGCTTCGTAAGCTGATGGATGTTTTCCTCTGTTGCGAAGCT 306
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CAGATTATGTCCGTGACTTGGCTTCGTAAGCTAATGGATGTTTTCCTCTGTTGCGAAGCT 300
Query 307 GAATTCAAAGCGATTTTGTTAATGGGTCGTGACCCGACCCAGATTTCTAAGCCGCCTTTT 366
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 301 GAATTCAAAGCGATTTTGTTAATGGGCCGTGACCCGACCCAGATTTCTAAACCGCCTTTT 360
Query 367 GACCGGTTAGTTCCTGAAATGTTAGACCGGTCGATTAAAGCGCTTGACATTTGTACCGCC 426
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GACCGGTTAGTTCCTGAAATGTTAGACCGGTCAATTAAAGCGCTTGACATTTGTACCGCC 420
Query 427 GTTGTTAACGGTATCGATTCCGTTAGACATTACCAGCGTTTAGCTGAGATTGCTGTGACG 486
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GTTGTTAACGGAATCGATTCCGTTAGACATTACCAGCGTTTAGCTGAGATTGCTGTTACG 480
Query 487 GCTTTGGAGCAACGTCCGTTAGGTGACGGTAACGTGAGGAGAGCTAAACGCGCGTTGGCG 546
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GCTTTGGAGCAACGTCCGTTAGGTGACGGTAACGTGAGGAGAGCGAAACGCGCGTTGGCG 540
Query 547 AATCTCGTCGTCGCGTTGAGTCTCGAGGATAAAGAGAATGTTAGCGGCGGAGGTGGTGGC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATCTCGTCGTCGCGTTGAGTCTCGAGGATAAAGAGAATGTTAGCGGCGGAGGTGGTGGC 600
Query 607 GGCGGCGGAGGGAATAAGACGACGGAGAGATCGTGGTCGTTTGGTCGTCGAAGCGGTGGA 666
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 GGCGGCGGAGGGAACAAGACGACGGAGAGATCGTGGTCGTTTGGTCGTCGTAGCGGTGGA 660
Query 667 TCATCGGCGGCGAGTAAAGGAGGAGCAACGATTGGTCAGCTCAAATCGTCGTCGTGGGCG 726
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 661 TCATCGGCGGCGAGTAAAGGAGGAGCGACGATTGGTCAGCTTAAATCGTCGTCGTGGGCG 720
Query 727 GTTGGGAGAAATTGGTCGGCGGCGAAGCAGATCCACGCAATGACAGCGAATCTTACGCCG 786
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||
Sbjct 721 GTTGGGAGAAATTGGTCGGCGGCGAAGCAGATCCACGCGATGACGGCGAATCTAACACCG 780
Query 787 CCACGTGGTAACGAAGCGGCGGGATTGCCTCAACCAATGTTTATAATGAGTACGGTGATG 846
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 781 CCACGTGGCAACGAAGCGGCGGGATTGCCTCAACCGATGTTTATAATGAGCACGGTGATG 840
Query 847 GTTTTCGTAATGTGGGTGCTAACGGCGGCGGTTCCGTGTCAGGAGAGATCAGGATTAGCG 906
|| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GTGTTCGTAATGTGGGTGTTAACGGCGGCGGTTCCGTGTCAGGAGAGATCTGGATTAGCG 900
Query 907 AATCATTTACCAGTGCCGCCGAAACATTTGAATTGGGCTCAGAGTTTGATCGGAATCCAT 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AATCATTTACCAGTGCCGCCGAAACATTTGAATTGGGCTCAGAGTTTGATCGGAATCCAT 960
Query 967 GAGAAAATCGGAGATGAGTGGAAGAAGAAAGAGAAGAAAGGATCTGCTGGATTGATGGAG 1026
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GAGAAGATCGGCGATGAGTGGAAGAAGAAAGAGAAGAAAGGATCTGCTGGATTAATGGAG 1020
Query 1027 GAGATGACGAGGATGGAGAAGCTAGGTCACTCGTTGATGGAATTCGCAGATGGATTTCAT 1086
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1021 GAGATGACGAGGATGGAGAAGCTTGGTCATTCGTTGATGGAATTCGCAGATGGATTTCAT 1080
Query 1087 TATCCGGCGGAGAAAGATGCTGCTGAATCTGCGGCGGTGCAAGTGGCGGAGATGGCGGAG 1146
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1081 TATCCGGCGGAGAAAGATGCTGCTGAATCTGCGGCGGCGCAAGTGGCAGAGATGGCGGAG 1140
Query 1147 ATATGCAGGAGAATGGAGGAGGAGCTTGTGCCGTTACAGCAACAGATCAGAGAAGTTTTT 1206
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATATGCCGGAGAATGGAGGAAGAGCTTGTGCCGTTACAGCAACAGATCAGAGAAGTTTTT 1200
Query 1207 CATAGGATCGTGAGGAGTCGTGCGGAGATTCTCGAGGTGTTGGAGCAAGCCGGGAAAGTT 1266
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 CATAGGATCGTGAGGAGTCGTGCGGAGATTCTTGAGGTGTTGGAGCAAGCCGGGAAAGTT 1260
Query 1267 TCGGCGCCAGTTGTGTAAAAGTTTTGAATTATTGGGAATCAATTTCGAAGTTTTGTAATT 1326
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1261 TCGGCGCCAGTTGTGTAAAAGTTTTGAATTATTGGGGATCAAATTCGAAGTTTTGTAATT 1320
Query 1327 CTTTGGGGGCTAATAGGATATTTTATTTTCTTGGTTTCGTCTATTGTTGTTTTT-CTATT 1385
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1321 CTTTGGGGGCTAATAGGATATTTTATTTTCTTGGTTTCGTCTATTGTTGTTTTTTCTACT 1380
Query 1386 TATGGTTGGGC-TTTTAGAACTCTGGACAGGCCCATGTCATATGT-TTTCC 1434
||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1381 TATGGTTGGGCCTTTTAGAACTCTGGACAGGCCCATGTCATATGTCTTTCC 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5