BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G63950.1

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907017 jgi|Araly1|907017|Al_scaffold_0002_98                      407    3e-113


> Ahg907017 jgi|Araly1|907017|Al_scaffold_0002_98
Length=339

 Score =  407 bits (220),  Expect = 3e-113
 Identities = 305/345 (88%), Gaps = 9/345 (3%)
 Strand=Plus/Plus

Query  4    ATGATTGTGTGGATGGGTGTTTATGATCAGAGATCCAAAG-GGAAAATCACGAAGAGTAT  62
            ||||||||||||||||||||||||||||||| |||| ||| | ||||||  ||||||| |
Sbjct  1    ATGATTGTGTGGATGGGTGTTTATGATCAGAAATCC-AAGAGCAAAATCTTGAAGAGTGT  59

Query  63   TTCTGACTTACCCGGAATTCACTCAT-CTTATATGGATTTGAAAGAAGGCACACTAGTAG  121
            | ||||||||||||| ||||||| || |||  ||||||||||||||||| ||| ||  | 
Sbjct  60   TGCTGACTTACCCGGGATTCACT-ATCCTTGCATGGATTTGAAAGAAGGGACATTAACAC  118

Query  122  TAATGGGAGATGTTGATCCTGTGGAGTTGGTTAGA-AACCTCAGAAAGAAATGGGGAAAA  180
            |  | ||||||||| ||||||||||| | |||| | || ||||||||||||||| ||| |
Sbjct  119  TGGTTGGAGATGTTAATCCTGTGGAGATCGTTA-ACAAGCTCAGAAAGAAATGGAGAAGA  177

Query  181  GCTAAATTAACATTATATGTACCTTATGATGCTTTGAAAGAAGCAAAAATTGCTGAGGCT  240
            |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  178  GCTAAATTAACATTATTTGTACCTTATGATGCTTTGAAAGAAGCAAAACTTGCTGAGGCT  237

Query  241  AAGCAGAAGAGGGAAGAGATTGAACGTGAAGCTCTTTACAGATACAACCGTGAAATTCGT  300
            ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  238  AAGCAGAGGAGAGAAGAGATTGAACGTGAAGCTCTTTACAGATATAACCGTGAAATTCGT  297

Query  301  GATATTTTCAATGATAAGGAGGAGCAAGGTTGTGTCATTTGCTAG  345
            || ||| |||||||| |||||   |||||||||||||||||||||
Sbjct  298  GAGATTGTCAATGATCAGGAG---CAAGGTTGTGTCATTTGCTAG  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12247944069


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5