BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63960.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337983 jgi|Araly1|337983|fgenesh1_pg.C_scaffold_2000082 368 1e-101
> Ahg337983 jgi|Araly1|337983|fgenesh1_pg.C_scaffold_2000082
Length=375
Score = 368 bits (199), Expect = 1e-101
Identities = 276/308 (90%), Gaps = 25/308 (8%)
Strand=Plus/Plus
Query 1 ATGGATTCAAAAGAAGGGAAGTTAACGGTGATTGGTGAGTTTGACGAAATGCAGATTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 ATGGATTCAAAAGAAGGGAAGTTAACGGTGATTGGTGAGTTTGACGAAATGCAGATTCTC 150
Query 61 AAAAAACTCAAAAAGAGATGGGAGAGTGCGAAAATGGCT-ACATTTGGCCCGTTCGATCC 119
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 151 AAAAAACTCAAAAAGAGATGGGAGAGTGCGAAAATGG-TGACATTTGGCCCGTTCGATCC 209
Query 120 GAAGAAGGAAGCGGAAACCGCTGCAGCTGCGgaaaagaagaagaaagaagaaaatgaacg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 210 GAAGAAGGAAGCGGAAACCGCTGCAGCTGCGGAAAAGAAGAAGAAAGAAGAAA--G---- 263
Query 180 tgaacgtgaacgtgaacgtgaagaagCTCTTTACCGGTCTCAGTCTCACCATGACACTCC 239
|||||||||| | | | || || ||||||||||| || ||| ||| | |||
Sbjct 264 TGAACGTGAA-G----C-T-------CT-TT-ACCGGTCTCAGGCTTACCGTGAAATTCC 308
Query 240 GGTTTGTCCAAT-GCATCATCACACTACTATTGTGTGCGATCATGATCACGGCTGTATAA 298
||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GGTATGTCCT-TCGCATCATCACACTACTATTGTGTGCGATCATGATCACGGCTGTATAA 367
Query 299 TCTCTTAA 306
||||||||
Sbjct 368 TCTCTTAA 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5