BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63970.1
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315035 jgi|Araly1|315035|fgenesh1_pm.C_scaffold_2000068 1103 0.0
> Ahg315035 jgi|Araly1|315035|fgenesh1_pm.C_scaffold_2000068
Length=696
Score = 1103 bits (597), Expect = 0.0
Identities = 663/696 (95%), Gaps = 0/696 (0%)
Strand=Plus/Plus
Query 29 ATGGCTACTTCTTCTACTCAGCTTCTACTGTCTTCTTCTTCTTTGTTTCACTCTCAAATT 88
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACTTCTTCTATTCAGCTTCTACTGTCTTCTTCTTCTTTGTTTCACTCTCAAATT 60
Query 89 ACCAAAAAGCCATTCCTTCTCCCGGCGACGAAGATCGGCGTTTGGAGACCGAAGAAGTCT 148
||||||| ||| |||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 61 ACCAAAACGCCGTTCCTTCTCCCGGCGACGAAGATCTACCTTCGGAGACCGAAGAAGTCT 120
Query 149 CTCTCGTTATCATGTCGTCCTTCAGCCTCGGTTTCAGCTGCTTCTTCCGCCGTCGACGTC 208
|||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 121 CTCTCGTTATCATGTCGTCCTTCAATCTCGGTTTTAGCGGCTTCTTCCGCCGTCGACGTC 180
Query 209 AATGAATCTGTGACTTCAGAGAAACCAACCAAAACGCTTCCGTTTCGAATCGGTCATGGT 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATGAATCTGTGACTTCAGAGAAACCAACCAAAACGCTTCCGTTTCGAATCGGTCATGGT 240
Query 269 TTCGATCTACATCGTTTAGAGCCAGGGTATCCTCTGATCATCGGTGGGATTGTTATTCCT 328
|| ||||| ||||| |||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 241 TTTGATCTGCATCGGTTAGAGCCAGGGTACCCTCTGATCATCGGCGGGATTGATATTCCT 300
Query 329 CATGATAGAGGCTGCGAAGCTCACTCCGATGGCGATGTGTTACTTCATTGTGTAGTGGAT 388
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 CATGATAGAGGCTGCGAAGCTCACTCCGATGGCGATGTGTTGCTTCATTGTGTAGTGGAT 360
Query 389 GCAATTTTGGGAGCACTAGGCCTTCCAGATATAGGTCAGATTTTCCCTGACTCTGATCCT 448
||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GCAATTTTGGGAGCATTAGGGCTTCCAGATATAGGTCAGATTTTCCCTGATTCTGATCCT 420
Query 449 AAATGGAAAGGAGCTGCTTCTTCTGTATTCATCAAAGAAGCTGTGAGACTCATGGACGAG 508
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 421 AAATGGAAAGGAGCTGCTTCATCTGTCTTCATCAAAGAAGCTGTGAGACTCATGGACGAG 480
Query 509 GCAGGGTATGAGATAGGAAACCTAGACGCGACGTTGATTCTCCAGAGACCAAAAATTAGT 568
||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 481 GCAGGATACGAGATAGGAAACCTAGACGCGACGTTGATTCTCCAGAGACCAAAGATAAGT 540
Query 569 CCACACAAAGAGACAATCCGATCCAATCTGTCCAAGCTTCTTGGAGCAGATCCTTCTGTA 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCACACAAAGAGACAATCCGATCCAATCTGTCCAAGCTTCTTGGAGCAGATCCTTCTGTT 600
Query 629 GTGAACTTGAAAGCCAAAACACATGAGAAAGTTGATAGCCTCGGAGAAAACAGAAGCATA 688
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 601 GTGAACTTAAAAGCCAAAACCCATGAGAAAGTTGATAGCCTTGGAGAAAACAGAAGCATT 660
Query 689 GCAGCTCACACTGTTATTCTCCTCATGAAGAAATAG 724
|||||||||||||||||||| |||||||||||||||
Sbjct 661 GCAGCTCACACTGTTATTCTACTCATGAAGAAATAG 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35492435727
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5