BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63990.1 Length=1656 Score E Sequences producing significant alignments: (Bits) Value Ahg474957 jgi|Araly1|474957|fgenesh2_kg.2__87__AT1G63990.1 2316 0.0 Ahg947583 jgi|Araly1|947583|scaffold_703812.1 370 2e-101 Ahg900551 jgi|Araly1|900551|Al_scaffold_0004_1201 202 7e-51 Ahg937074 jgi|Araly1|937074|scaffold_501265.1 169 7e-41 > Ahg474957 jgi|Araly1|474957|fgenesh2_kg.2__87__AT1G63990.1 Length=1584 Score = 2316 bits (1254), Expect = 0.0 Identities = 1472/1575 (93%), Gaps = 23/1575 (1%) Strand=Plus/Plus Query 21 AAAATGGAGGAAAGTTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCT 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAATGGAGGAAAGTTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCT 60 Query 81 TACGCTGACATTCTTCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAAT 140 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 TACGCTGACATTCTTCGTCCTCACGAAGCTCGTGCTAGAATCGAAGGTTCTGTTCTCAAT 120 Query 141 CTCCTCCGAATTTTGAACTCCCCAGATCCAGCTATCTCCGATCTCTCTCTGATCAATAGG 200 || ||||||||||||| || |||||| |||| |||||||||||||||||||||||| || Sbjct 121 CTTTTCCGAATTTTGAATTCTCCAGATTCAGCCATCTCCGATCTCTCTCTGATCAATGGG 180 Query 201 AAGAGAAGCAATAGTTGTATAAACAAAGGGATACTCACAGATGTTTCATATATATTCCTC 260 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 181 AAGAGAAGCAATAGTTGTATAAACCAAGGGATACTCACAGATGTTTCATATATATTCCTC 240 Query 261 TCTACTTCGTTTACTAAGAGTTCATTGACGAATGCTAAAACAGCTAAAGCTTTTGTTCGT 320 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 241 TCTACTTCATTTACTAAGAGTTCATTGACGAATGCTAAAACAGCTAAAACTTTTGTTCGT 300 Query 321 GTGTGGAAAGTTATGGAAATATGCTTTCAGATTCTGCTTCAAGAGAAACGAGTCACACAA 380 |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct 301 GTGTGGAAAGTTATGGAAATATGCTTCCAGATTCTGCTCCAAGAGAAACGAGTGACACAA 360 Query 381 AGAGAGCTCTTCTATAAGTTGCTTTGTGATTCACCTGATTACTTTTCATCTCAGATTGAA 440 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 AGAGAGCTCTTCTATAAATTGCTTTGTGATTCACCTGATTATTTTTCATCTCAGATTGAA 420 Query 441 GTTAACAGAAGTGTCCAAGATGTGGTAGCACTTCTACGTTGTAGTAGATACAGTCTTGGT 500 |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 421 GTTAACAGAACTGTCCAAGATGTGGTAGCACTCCTACGTTGCAGTAGATACAGTCTTGGG 480 Query 501 ATTATGGCTTCAAGCAGAGGCCTTGTTGCTGGAAGGTTATTTCTACAAGAACCAGGTAAG 560 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATTATGGCTTCTAGCAGAGGCCTTGTTGCTGGAAGGTTATTTCTACAAGAACCAGGTAAG 540 Query 561 GAAGCTGTAGATTGTTCGGCCTGTGGTTCTTCAGGTTTTGCTATAACTGGAGACTTGAAT 620 |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 541 GAAGCTGTAGATTGTTCGGCCTGTGGTTCTTCAGGTTTCACTATAACCGGAGACTTGAAT 600 Query 621 TTGCTAGACAATACCATCATGAGAACTGATGCTCGTTATATCATTATTGTGGAAAAGCAT 680 ||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||| Sbjct 601 TTGCTAGACAACACCATCATGAGAAGTGATGCACGGTATATCATTATTGTGGAAAAGCAT 660 Query 681 GCGATCTTTCATCGGCTCGTGGAAGATCGTGTGTTCAATCACATTCCTTGCGTGTTCATC 740 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GCGATTTTTCATCGGCTTGTGGAAGATCGTGTGTTCAATCACATTCCTTGCGTGTTCATC 720 Query 741 ACAGCGAAAGGGTATCCGGATATTGCCACAAGGTTTTTCCTCCACCGGATGAGCACAACT 800 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 721 ACTGCGAAAGGGTATCCGGATATTGCCACAAGGTTTTTCCTTCACCGGATGAGCACAACA 780 Query 801 TTTCCTGATCTGCCAATTCTTGTTCTAGTTGATTGGAATCCAGCTGGGTTAGCTATACTA 860 |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 781 TTTCCTAATCTGCCAATTCTTGCTCTAGTAGATTGGAATCCAGCTGGGTTAGCTATACTA 840 Query 861 TGCACCTTCAAGTTTGGAAGCATAGGGATGGGACTTGAAGCATACAGATACGCTTGCAAT 920 |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| Sbjct 841 TGCACCTTCAAGTTTGGAAGCATAGGAATGGGTCTTGAAGCATACAGATATGCTTGCAAT 900 Query 921 GTGAAGTGGATTGGTCTCCGAGGAGATGATCTGAATCTGATACCAGAAGAGTCTTTGGTT 980 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 901 GTGAAGTGGATTGGTCTCCGAGGAGATGATCTGAATCTGATACCAGACGAGTCTTTGGTT 960 Query 981 CCCTTAAAGCCAAAAGATTCACAGATTGCTAAGAGCTTATTGTCCTCCAAAATATTGCAG 1040 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 961 CCCTTAAAGCCAAAGGATTCACAGATTGCTAAGAGCTTATTGTCCTCCAAAATCTTGCAG 1020 Query 1041 GAAAACTACATAGAGGAGTTGTCACTGATGGTTCAAACTGGTAAAAGAGCGGAAATTGAA 1100 || ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1021 GATAACTACAGAGACGAGTTGTCACTGATGGTGCAAACTGGTAAAAGAGCGGAAATTGAA 1080 Query 1101 GCTCTCTATTGTCATGGTTATAATTATCTCGGTAAATATATAGCTACCAAGATCGTGCAA 1160 ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1081 GCTCTGTATTGTCATGGTTATAATTATCTCGGTAAATATATAGCCACCAAGATCGTGCAG 1140 Query 1161 GGCAAATACATATAACACTTAAAACACCAACATGTAAGGTCTTCCACCAATAAAGATGCG 1220 ||||||||||||||||| | |||||||| |||||||| | ||| |||||| | Sbjct 1141 GGCAAATACATATAACAAATCAAACACCAGCATGTAAGATTTTCTACCAAT-----T--- 1192 Query 1221 TTTGCTTTATATTGGTTCCAAATATAAGAGAGTAACTTATT-AGGGTGAAGTTTTATGCA 1279 | |||||||||| ||||||||| | || |||||| ||| |||||||||||||| Sbjct 1193 T-------ATATTGGTTCTAAATATAAG-GT-TA-CTTATTCAGG-TGAAGTTTTATGCA 1241 Query 1280 AACTCTAATAGAATGTAAAAATAGATTACAATCAAATCAAAATTTTCCAAACTGAAGTAT 1339 |||||| || ||||||| ||||||||||||| ||||||||||||||||||| ||||| || Sbjct 1242 AACTCTCATGGAATGTATAAATAGATTACAAACAAATCAAAATTTTCCAAATTGAAGGAT 1301 Query 1340 GATCTTTGTTTACATATGGCATTGTGATGATTTAGTAACAAAACTTGTCCTAATCTCCAC 1399 ||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1302 GATATTTGTTTACATACGGCATGGTGATGAATTAGTAACAAAACTTGTCCTAATCTCCAC 1361 Query 1400 TTTCCTATGCAGGTATAATGATAATTCCAACCAAAAATTCTCGCTCACTTCTTGCTTGAT 1459 |||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| Sbjct 1362 TTTCCTATGCAGGTATAATGATAATTTCAACCAAAAATTGT-GCTCACTTCTTGCTTGAT 1420 Query 1460 ACAAGACTAATCTTCTTTCCCTCCACAACAAACTTGCCACTTCGCTCCAGCTGCAACAAG 1519 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1421 ACAAGACTAATCTTCTTTCCGTCCACAACAAACTTGCCACTTCGCACCAGCTGCAACAAA 1480 Query 1520 GACGTTAGAACAATATCAGTAAGAATGACAAACTTTGGAACTTTGTGTAG-AA-TATGAG 1577 ||||||||||||| |||||||||||||| ||||||||||||||| ||||| || |||||| Sbjct 1481 GACGTTAGAACAACATCAGTAAGAATGATAAACTTTGGAACTTTCTGTAGTAAATATGAG 1540 Query 1578 AATCCCACTTTAAAA 1592 || | |||| ||||| Sbjct 1541 AAACTCACTATAAAA 1555 > Ahg947583 jgi|Araly1|947583|scaffold_703812.1 Length=277 Score = 370 bits (200), Expect = 2e-101 Identities = 232/248 (94%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 35 TTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCT 94 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 5 TTCAGGACTCTCATCGATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCT 64 Query 95 TCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCTCCGAATTTT 154 ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 65 TCTCCCTCACGAAGCTCGTGCTAGAATCGAAGTCTCTGTTCTCAATCTCCTTAGAATTTT 124 Query 155 GAACTCCCCAGATCCAGCTATCTCCGATCTCTCTCTGATCAATAGGAAGAGAAGCAATAG 214 || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 125 AAATTCCCCTGATCCAGCTATCTCTGATCTCTCCCTGATCAATAGGAAGAGAAGCAATAG 184 Query 215 TTGTATAAACAAAGGGATACTCACAGATGTTTCATATATATTCCTCTCTACTTCGTTTAC 274 ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 185 CTGTATAAACCAAGGGATACTCACAGATGTTTCATATATCTTCCTCTCTACTTCATTTAC 244 Query 275 TAAGAGTT 282 |||||||| Sbjct 245 TAAGAGTT 252 > Ahg900551 jgi|Araly1|900551|Al_scaffold_0004_1201 Length=429 Score = 202 bits (109), Expect = 7e-51 Identities = 131/142 (92%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 51 ATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCTTCTTCCTCACGAAGCT 110 ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| Sbjct 1 ATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCTTCTCCCTCACGAAGCT 60 Query 111 CGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCTCCGAATTTTGAACTCCCCAGATCCA 170 ||||||||||||||||| ||||||||||||||||| ||||||| || ||||| |||||| Sbjct 61 CGTGCTAGAATCGAAGTCTCTGTTCTCAATCTCCTTAGAATTTTAAATTCCCCTGATCCA 120 Query 171 GCTATCTCCGATCTCTCTCTGA 192 |||||||| |||||||| |||| Sbjct 121 GCTATCTCTGATCTCTCCCTGA 142 > Ahg937074 jgi|Araly1|937074|scaffold_501265.1 Length=211 Score = 169 bits (91), Expect = 7e-41 Identities = 110/119 (92%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 35 TTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCT 94 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 5 TTCAGGACTCTCATCGATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCT 64 Query 95 TCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCT-CCGAATT 152 ||| ||||||||||||||||||||||||||||| |||||||| |||||| | || |||| Sbjct 65 TCTCCCTCACGAAGCTCGTGCTAGAATCGAAGTCTCTGTTCTTAATCTCGTACCTAATT 123 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62087099350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5