BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63990.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474957 jgi|Araly1|474957|fgenesh2_kg.2__87__AT1G63990.1 2316 0.0
Ahg947583 jgi|Araly1|947583|scaffold_703812.1 370 2e-101
Ahg900551 jgi|Araly1|900551|Al_scaffold_0004_1201 202 7e-51
Ahg937074 jgi|Araly1|937074|scaffold_501265.1 169 7e-41
> Ahg474957 jgi|Araly1|474957|fgenesh2_kg.2__87__AT1G63990.1
Length=1584
Score = 2316 bits (1254), Expect = 0.0
Identities = 1472/1575 (93%), Gaps = 23/1575 (1%)
Strand=Plus/Plus
Query 21 AAAATGGAGGAAAGTTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAATGGAGGAAAGTTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCT 60
Query 81 TACGCTGACATTCTTCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAAT 140
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TACGCTGACATTCTTCGTCCTCACGAAGCTCGTGCTAGAATCGAAGGTTCTGTTCTCAAT 120
Query 141 CTCCTCCGAATTTTGAACTCCCCAGATCCAGCTATCTCCGATCTCTCTCTGATCAATAGG 200
|| ||||||||||||| || |||||| |||| |||||||||||||||||||||||| ||
Sbjct 121 CTTTTCCGAATTTTGAATTCTCCAGATTCAGCCATCTCCGATCTCTCTCTGATCAATGGG 180
Query 201 AAGAGAAGCAATAGTTGTATAAACAAAGGGATACTCACAGATGTTTCATATATATTCCTC 260
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AAGAGAAGCAATAGTTGTATAAACCAAGGGATACTCACAGATGTTTCATATATATTCCTC 240
Query 261 TCTACTTCGTTTACTAAGAGTTCATTGACGAATGCTAAAACAGCTAAAGCTTTTGTTCGT 320
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 TCTACTTCATTTACTAAGAGTTCATTGACGAATGCTAAAACAGCTAAAACTTTTGTTCGT 300
Query 321 GTGTGGAAAGTTATGGAAATATGCTTTCAGATTCTGCTTCAAGAGAAACGAGTCACACAA 380
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 301 GTGTGGAAAGTTATGGAAATATGCTTCCAGATTCTGCTCCAAGAGAAACGAGTGACACAA 360
Query 381 AGAGAGCTCTTCTATAAGTTGCTTTGTGATTCACCTGATTACTTTTCATCTCAGATTGAA 440
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AGAGAGCTCTTCTATAAATTGCTTTGTGATTCACCTGATTATTTTTCATCTCAGATTGAA 420
Query 441 GTTAACAGAAGTGTCCAAGATGTGGTAGCACTTCTACGTTGTAGTAGATACAGTCTTGGT 500
|||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 421 GTTAACAGAACTGTCCAAGATGTGGTAGCACTCCTACGTTGCAGTAGATACAGTCTTGGG 480
Query 501 ATTATGGCTTCAAGCAGAGGCCTTGTTGCTGGAAGGTTATTTCTACAAGAACCAGGTAAG 560
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTATGGCTTCTAGCAGAGGCCTTGTTGCTGGAAGGTTATTTCTACAAGAACCAGGTAAG 540
Query 561 GAAGCTGTAGATTGTTCGGCCTGTGGTTCTTCAGGTTTTGCTATAACTGGAGACTTGAAT 620
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 541 GAAGCTGTAGATTGTTCGGCCTGTGGTTCTTCAGGTTTCACTATAACCGGAGACTTGAAT 600
Query 621 TTGCTAGACAATACCATCATGAGAACTGATGCTCGTTATATCATTATTGTGGAAAAGCAT 680
||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 601 TTGCTAGACAACACCATCATGAGAAGTGATGCACGGTATATCATTATTGTGGAAAAGCAT 660
Query 681 GCGATCTTTCATCGGCTCGTGGAAGATCGTGTGTTCAATCACATTCCTTGCGTGTTCATC 740
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCGATTTTTCATCGGCTTGTGGAAGATCGTGTGTTCAATCACATTCCTTGCGTGTTCATC 720
Query 741 ACAGCGAAAGGGTATCCGGATATTGCCACAAGGTTTTTCCTCCACCGGATGAGCACAACT 800
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 ACTGCGAAAGGGTATCCGGATATTGCCACAAGGTTTTTCCTTCACCGGATGAGCACAACA 780
Query 801 TTTCCTGATCTGCCAATTCTTGTTCTAGTTGATTGGAATCCAGCTGGGTTAGCTATACTA 860
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 781 TTTCCTAATCTGCCAATTCTTGCTCTAGTAGATTGGAATCCAGCTGGGTTAGCTATACTA 840
Query 861 TGCACCTTCAAGTTTGGAAGCATAGGGATGGGACTTGAAGCATACAGATACGCTTGCAAT 920
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 841 TGCACCTTCAAGTTTGGAAGCATAGGAATGGGTCTTGAAGCATACAGATATGCTTGCAAT 900
Query 921 GTGAAGTGGATTGGTCTCCGAGGAGATGATCTGAATCTGATACCAGAAGAGTCTTTGGTT 980
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 GTGAAGTGGATTGGTCTCCGAGGAGATGATCTGAATCTGATACCAGACGAGTCTTTGGTT 960
Query 981 CCCTTAAAGCCAAAAGATTCACAGATTGCTAAGAGCTTATTGTCCTCCAAAATATTGCAG 1040
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 CCCTTAAAGCCAAAGGATTCACAGATTGCTAAGAGCTTATTGTCCTCCAAAATCTTGCAG 1020
Query 1041 GAAAACTACATAGAGGAGTTGTCACTGATGGTTCAAACTGGTAAAAGAGCGGAAATTGAA 1100
|| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 GATAACTACAGAGACGAGTTGTCACTGATGGTGCAAACTGGTAAAAGAGCGGAAATTGAA 1080
Query 1101 GCTCTCTATTGTCATGGTTATAATTATCTCGGTAAATATATAGCTACCAAGATCGTGCAA 1160
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1081 GCTCTGTATTGTCATGGTTATAATTATCTCGGTAAATATATAGCCACCAAGATCGTGCAG 1140
Query 1161 GGCAAATACATATAACACTTAAAACACCAACATGTAAGGTCTTCCACCAATAAAGATGCG 1220
||||||||||||||||| | |||||||| |||||||| | ||| |||||| |
Sbjct 1141 GGCAAATACATATAACAAATCAAACACCAGCATGTAAGATTTTCTACCAAT-----T--- 1192
Query 1221 TTTGCTTTATATTGGTTCCAAATATAAGAGAGTAACTTATT-AGGGTGAAGTTTTATGCA 1279
| |||||||||| ||||||||| | || |||||| ||| ||||||||||||||
Sbjct 1193 T-------ATATTGGTTCTAAATATAAG-GT-TA-CTTATTCAGG-TGAAGTTTTATGCA 1241
Query 1280 AACTCTAATAGAATGTAAAAATAGATTACAATCAAATCAAAATTTTCCAAACTGAAGTAT 1339
|||||| || ||||||| ||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 1242 AACTCTCATGGAATGTATAAATAGATTACAAACAAATCAAAATTTTCCAAATTGAAGGAT 1301
Query 1340 GATCTTTGTTTACATATGGCATTGTGATGATTTAGTAACAAAACTTGTCCTAATCTCCAC 1399
||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1302 GATATTTGTTTACATACGGCATGGTGATGAATTAGTAACAAAACTTGTCCTAATCTCCAC 1361
Query 1400 TTTCCTATGCAGGTATAATGATAATTCCAACCAAAAATTCTCGCTCACTTCTTGCTTGAT 1459
|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1362 TTTCCTATGCAGGTATAATGATAATTTCAACCAAAAATTGT-GCTCACTTCTTGCTTGAT 1420
Query 1460 ACAAGACTAATCTTCTTTCCCTCCACAACAAACTTGCCACTTCGCTCCAGCTGCAACAAG 1519
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1421 ACAAGACTAATCTTCTTTCCGTCCACAACAAACTTGCCACTTCGCACCAGCTGCAACAAA 1480
Query 1520 GACGTTAGAACAATATCAGTAAGAATGACAAACTTTGGAACTTTGTGTAG-AA-TATGAG 1577
||||||||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||
Sbjct 1481 GACGTTAGAACAACATCAGTAAGAATGATAAACTTTGGAACTTTCTGTAGTAAATATGAG 1540
Query 1578 AATCCCACTTTAAAA 1592
|| | |||| |||||
Sbjct 1541 AAACTCACTATAAAA 1555
> Ahg947583 jgi|Araly1|947583|scaffold_703812.1
Length=277
Score = 370 bits (200), Expect = 2e-101
Identities = 232/248 (94%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 35 TTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCT 94
||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 5 TTCAGGACTCTCATCGATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCT 64
Query 95 TCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCTCCGAATTTT 154
||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 65 TCTCCCTCACGAAGCTCGTGCTAGAATCGAAGTCTCTGTTCTCAATCTCCTTAGAATTTT 124
Query 155 GAACTCCCCAGATCCAGCTATCTCCGATCTCTCTCTGATCAATAGGAAGAGAAGCAATAG 214
|| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 125 AAATTCCCCTGATCCAGCTATCTCTGATCTCTCCCTGATCAATAGGAAGAGAAGCAATAG 184
Query 215 TTGTATAAACAAAGGGATACTCACAGATGTTTCATATATATTCCTCTCTACTTCGTTTAC 274
||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 185 CTGTATAAACCAAGGGATACTCACAGATGTTTCATATATCTTCCTCTCTACTTCATTTAC 244
Query 275 TAAGAGTT 282
||||||||
Sbjct 245 TAAGAGTT 252
> Ahg900551 jgi|Araly1|900551|Al_scaffold_0004_1201
Length=429
Score = 202 bits (109), Expect = 7e-51
Identities = 131/142 (92%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 51 ATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCTTCTTCCTCACGAAGCT 110
||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 1 ATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCTTCTCCCTCACGAAGCT 60
Query 111 CGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCTCCGAATTTTGAACTCCCCAGATCCA 170
||||||||||||||||| ||||||||||||||||| ||||||| || ||||| ||||||
Sbjct 61 CGTGCTAGAATCGAAGTCTCTGTTCTCAATCTCCTTAGAATTTTAAATTCCCCTGATCCA 120
Query 171 GCTATCTCCGATCTCTCTCTGA 192
|||||||| |||||||| ||||
Sbjct 121 GCTATCTCTGATCTCTCCCTGA 142
> Ahg937074 jgi|Araly1|937074|scaffold_501265.1
Length=211
Score = 169 bits (91), Expect = 7e-41
Identities = 110/119 (92%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 35 TTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCT 94
||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 5 TTCAGGACTCTCATCGATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCT 64
Query 95 TCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCT-CCGAATT 152
||| ||||||||||||||||||||||||||||| |||||||| |||||| | || ||||
Sbjct 65 TCTCCCTCACGAAGCTCGTGCTAGAATCGAAGTCTCTGTTCTTAATCTCGTACCTAATT 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5