BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64000.1
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474956 jgi|Araly1|474956|fgenesh2_kg.2__86__AT1G64000.1 1221 0.0
Ahg493831 jgi|Araly1|493831|fgenesh2_kg.7__3264__AT5G41570.1 387 1e-106
> Ahg474956 jgi|Araly1|474956|fgenesh2_kg.2__86__AT1G64000.1
Length=848
Score = 1221 bits (661), Expect = 0.0
Identities = 784/842 (93%), Gaps = 14/842 (2%)
Strand=Plus/Plus
Query 1 ATCCTTATAACCTTTCTTCTCCTCTTCTCCTTCTTCCTCTTATGCAAACATATATTTACA 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 ATCCTTATAACATTTCTTCTCCTCTTCTCCTTCTCCCTCTTATGCAAACATATATTTTTA 60
Query 61 TAAACACACACATATATATAGTAagagagagagagagagaTCTAGCA-AGATAGTGAAAG 119
|||| ||| | ||| ||||| | | |||||||||||||| | ||| ||||||||
Sbjct 61 TAAATACA-A-ATACATATACT-------A-AGAGAGAGATCTAG-ATAGAGAGTGAAAG 109
Query 120 CTTCATAATCAATGGAAGGGGTTGACAACACAAATCCTATGTTAACCCTAGAAGAAGGCG 179
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 110 CTTCATAATCAATGGAAGGGGTTGACAATACAAACCCGATGTTAACCCTAGAAGAAGGCG 169
Query 180 AAAACAACAATCCTTTTTCTTCCTTAGATGACAAAACATTAATGATGATGGCTCCTTCGT 239
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 170 AAAACAACAATCCTTTTTCTTCCTTTGATGACAAAACCTTAATGATGATGGCTCCTTCAT 229
Query 240 TAATCTTTTCGGGCGATGTAGGTCCATCTTCTTCTTCTTGTACTCCAGCAGGTTATCATC 299
|||| ||||| || ||||||||| ||||||||||||||||| ||| | || ||| |||||
Sbjct 230 TAATGTTTTCCGGAGATGTAGGTTCATCTTCTTCTTCTTGTTCTCTATCAAGTTTTCATC 289
Query 300 TATCTGCTCAGCTGGAGAACTTTCGAGGAGGTGGAGGAGAGATGGGAGGATTAGTGAGTA 359
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 290 TATCTGCTCAGCTGGAGAATTTTCGAGGAGGTGGAGGAGATATGGGAGGATTAGTGAGTA 349
Query 360 ATAATAGCAATAATAGTGATCATAATAAGAATTGCAACAAAGGAAAAGGGAAGAGAACTT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 350 ATAATAGCAATAATAGTGATCATAATAAGAATTGCAACAAAGGAAAAGGGAAGAAAACTT 409
Query 420 TGGCAATGCAGAGGATAGCTTTTCATACAAGGAGTGATGATGATGTTCTTGATGATGGTT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CGGCAATGCAGAGGATAGCTTTTCATACAAGGAGTGATGATGATGTTCTTGATGATGGTT 469
Query 480 ATCGTTGGCGAAAGTACGGTCAGAAATCTGTCAAGAACAATGCTCATCCCAGGAGCTATT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ATCGTTGGCGAAAGTACGGTCAGAAATCTGTCAAGAACAATGCTCATCCCAGGAGCTATT 529
Query 540 ATAGATGTACATACCACACATGCAACGTGAAGAAACAAGTGCAAAGACTGGCAAAAGATC 599
| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 530 ACAGATGTACATACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATC 589
Query 600 CAAACGTTGTCGTAACAACCTACGAAGGTGTTCATAATCATCCTTGTGAGAAGCTCATGG 659
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CAAACGTCGTTGTAACAACCTACGAAGGTGTTCATAATCATCCTTGTGAGAAGCTCATGG 649
Query 660 AGACTCTTAGCCCTCTCCTTAGGCAACTTCAGTTCCTCTCAAGAGTTTCTGATCTGTAAT 719
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 650 AGACTCTTAGTCCTCTCCTTAGGCAACTTCAGTTCCTCTCCAGAGTTTCTGATCTGTGAT 709
Query 720 TATTGAATGTTAATTAGTGGTGTAAT-ACATTAATTATGCTTTAATCTCTCCATTGACCC 778
||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 710 TATTGAATGTTAATTGGTGGTGTAATTA-ATTAATTATGCTTTAATCTCTCCATTGACCC 768
Query 779 TCAATCTCCAAAGAGACAAATGTATAGAATAAATCTCATAACATACATGCTTTAGGTTTA 838
|||||||| |||||| |||||||||||| |||||||| | |||| |||||||| |||||
Sbjct 769 CCAATCTCCCAAGAGATAAATGTATAGAACAAATCTCAGATCATAGATGCTTTATGTTTA 828
Query 839 TT 840
||
Sbjct 829 TT 830
> Ahg493831 jgi|Araly1|493831|fgenesh2_kg.7__3264__AT5G41570.1
Length=589
Score = 387 bits (209), Expect = 1e-106
Identities = 249/269 (93%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 431 AGGATAGCTTTTCATACAAGGAGTGATGATGATGTTCTTGATGATGGTTATCGTTGGCGA 490
||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AGGATTGCGTTTCAAACGAGGAGTGATGATGATGTTCTTGATGATGGTTATCGTTGGCGA 318
Query 491 AAGTACGGTCAGAAATCTGTCAAGAACAATGCTCATCCCAGGAGCTATTATAGATGTACA 550
|| || || ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 319 AAATATGGCCAGAAATCTGTCAAGCACAATGCTCATCCCAGGAGCTATTACAGATGTACG 378
Query 551 TACCACACATGCAACGTGAAGAAACAAGTGCAAAGACTGGCAAAAGATCCAAACGTTGTC 610
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 379 TACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATCCAAACGTCGTC 438
Query 611 GTAACAACCTACGAAGGTGTTCATAATCATCCTTGTGAGAAGCTCATGGAGACTCTTAGC 670
||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 439 GTAACGACCTACGAAGGCATTCATAACCATCCTTGTGAGAAGCTCATGGAGACTCTTAAT 498
Query 671 CCTCTCCTTAGGCAACTTCAGTTCCTCTC 699
|||||||| ||||||||||||||||||||
Sbjct 499 CCTCTCCTCAGGCAACTTCAGTTCCTCTC 527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32900077371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5