BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64010.1 Length=558 Score E Sequences producing significant alignments: (Bits) Value Ahg474955 jgi|Araly1|474955|fgenesh2_kg.2__85__AT1G64010.1 881 0.0 > Ahg474955 jgi|Araly1|474955|fgenesh2_kg.2__85__AT1G64010.1 Length=558 Score = 881 bits (477), Expect = 0.0 Identities = 531/558 (95%), Gaps = 0/558 (0%) Strand=Plus/Plus Query 1 ATGACGAAAGACCGAGACTTTCACCTTATCAATGGGACATCAGTTTCTGTGTCTCTCATG 60 ||||| |||||||| |||||||||||| ||||||| || | ||||| |||| || ||||| Sbjct 1 ATGACAAAAGACCGCGACTTTCACCTTCTCAATGGAACCTTAGTTTATGTGCCTTTCATG 60 Query 61 AGCAGCTATAAGGACCAATACATAGAGGCTTATGATGGTTTCAAGGTCCTAAAGCTCCCA 120 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 61 AGCAGCTATAAGGACCAATACATGGAGGCTTATGATGATTTCAAGGTCCTAAAGCTCCCA 120 Query 121 TTTCGACAAGGTAATGATACCAGTCGAAACTTCTCTATGCATTTCTATCTCCCTGATGAG 180 |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 TTTCGACAAGGTGATGATACCAGTCGAAGTTTCTCTATGCATTTCTATCTCCCTGATGAG 180 Query 181 AAAGATGGTTTGGATAATCTTGTGGAGAAAATGGCATCAAGTGTTGGTTTCTTGGATAGT 240 |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 AAAGATGGGTTGGATAAACTTGTGGAGAAAATGGCATCAAGTCTTGGTTTCTTGGATAGT 240 Query 241 CATATTCCGAGTCAAAAAGTTAAAGTTGGTGAATTCGGAATCCCAAAGTTTAAGATCGAA 300 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 241 CATATTCCGAGTCAAAAAGTTAAGGTTGGTGAATTTAGAATCCCAAAGTTTAAGATCGAA 300 Query 301 TTCGGATTCTCGGCTTCAAGGGCTTTCAATAGATTGGGATTGGATGAAATGGCTTTGTAC 360 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 TTCGGATTCTCGGCTTCAAGGGCTTTCAATAGATTAGGATTGGATGAAATGGCTTTGTAC 360 Query 361 CAAAAAGCTTGTGTTGAGATTGATGAAGAAGGTGCTGAAGCTATTGCCGCAACTGCTGTT 420 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 361 CAAAAATCTTGTGTTGAGATTGATGAAGAAGGTGCTGAAGCTATTGCCGCAACTCCTGTT 420 Query 421 GTTGGAGGCTTTGGATGTGCTTTTGTTAAGAGGATAGATTTTGTTGCTGATCATCCATTT 480 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTTGGAGGCTTTGGATGTTCTTTTGTTAAGAGGATAGATTTTGTTGCTGATCATCCATTT 480 Query 481 CTTTTCATGATTAGAGAAGACAAAACCGGAACAGTTTTGTTCGTTGGTCAGATCTTTGAT 540 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 481 CTTTTCATGATTAGAGAAGACAAAACCGGAACCGTTTTGTTCGTTGGTCAGATTTTTGAT 540 Query 541 CCTTCTTATTCTTCTTAG 558 |||||| ||||||||||| Sbjct 541 CCTTCTAATTCTTCTTAG 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20375084526 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5