BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64010.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474955 jgi|Araly1|474955|fgenesh2_kg.2__85__AT1G64010.1 881 0.0
> Ahg474955 jgi|Araly1|474955|fgenesh2_kg.2__85__AT1G64010.1
Length=558
Score = 881 bits (477), Expect = 0.0
Identities = 531/558 (95%), Gaps = 0/558 (0%)
Strand=Plus/Plus
Query 1 ATGACGAAAGACCGAGACTTTCACCTTATCAATGGGACATCAGTTTCTGTGTCTCTCATG 60
||||| |||||||| |||||||||||| ||||||| || | ||||| |||| || |||||
Sbjct 1 ATGACAAAAGACCGCGACTTTCACCTTCTCAATGGAACCTTAGTTTATGTGCCTTTCATG 60
Query 61 AGCAGCTATAAGGACCAATACATAGAGGCTTATGATGGTTTCAAGGTCCTAAAGCTCCCA 120
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 61 AGCAGCTATAAGGACCAATACATGGAGGCTTATGATGATTTCAAGGTCCTAAAGCTCCCA 120
Query 121 TTTCGACAAGGTAATGATACCAGTCGAAACTTCTCTATGCATTTCTATCTCCCTGATGAG 180
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTTCGACAAGGTGATGATACCAGTCGAAGTTTCTCTATGCATTTCTATCTCCCTGATGAG 180
Query 181 AAAGATGGTTTGGATAATCTTGTGGAGAAAATGGCATCAAGTGTTGGTTTCTTGGATAGT 240
|||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AAAGATGGGTTGGATAAACTTGTGGAGAAAATGGCATCAAGTCTTGGTTTCTTGGATAGT 240
Query 241 CATATTCCGAGTCAAAAAGTTAAAGTTGGTGAATTCGGAATCCCAAAGTTTAAGATCGAA 300
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 241 CATATTCCGAGTCAAAAAGTTAAGGTTGGTGAATTTAGAATCCCAAAGTTTAAGATCGAA 300
Query 301 TTCGGATTCTCGGCTTCAAGGGCTTTCAATAGATTGGGATTGGATGAAATGGCTTTGTAC 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTCGGATTCTCGGCTTCAAGGGCTTTCAATAGATTAGGATTGGATGAAATGGCTTTGTAC 360
Query 361 CAAAAAGCTTGTGTTGAGATTGATGAAGAAGGTGCTGAAGCTATTGCCGCAACTGCTGTT 420
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 CAAAAATCTTGTGTTGAGATTGATGAAGAAGGTGCTGAAGCTATTGCCGCAACTCCTGTT 420
Query 421 GTTGGAGGCTTTGGATGTGCTTTTGTTAAGAGGATAGATTTTGTTGCTGATCATCCATTT 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTGGAGGCTTTGGATGTTCTTTTGTTAAGAGGATAGATTTTGTTGCTGATCATCCATTT 480
Query 481 CTTTTCATGATTAGAGAAGACAAAACCGGAACAGTTTTGTTCGTTGGTCAGATCTTTGAT 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 481 CTTTTCATGATTAGAGAAGACAAAACCGGAACCGTTTTGTTCGTTGGTCAGATTTTTGAT 540
Query 541 CCTTCTTATTCTTCTTAG 558
|||||| |||||||||||
Sbjct 541 CCTTCTAATTCTTCTTAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5