BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G64020.1

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474954 jgi|Araly1|474954|fgenesh2_kg.2__84__AT1G64020.1           525    8e-149


> Ahg474954 jgi|Araly1|474954|fgenesh2_kg.2__84__AT1G64020.1
Length=423

 Score =  525 bits (284),  Expect = 8e-149
 Identities = 340/366 (93%), Gaps = 7/366 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGGATG-AAGGAGCTATGAAGAAGCAAAACGAAGTCGCGATGATTCTTTCGTGGCA  59
            ||||| | || ||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1    ATGGACG-TGAAAGAAGCTATGAAGAAGCAAAACGAAGTCGCGATGATCCTTTCGTGGCA  59

Query  60   TCTCTTCTCTACTGTAGCCAAACACTCTAACAACGTTTTCTCACCGGCGTCAAT-AACCG  118
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct  60   TCTCTTCTCTACTGTAGCCAAACACTCTAACAACGTTTTCTCGCCGGCGTCAATCAAC-G  118

Query  119  CAGTGTTCACCATGATGGCCTCTGGCCCCGGCAGTTCTTTGATCTCCGATCAAATCCTCT  178
            ||| ||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||
Sbjct  119  CAGCGTTCACCATGATGGCTTCTGGTCCCGGCAGTTCTTCGATTTCCGATCAAATCCTCT  178

Query  179  CCTTCCTCGGATCTTCTTCTATCGATGAGCTCAACTCCGTCTTCCGCGTCATTACTACTG  238
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  CCTTCCTTAGATCTTCTTCTATCGATGAGCTCAACTCCGTCTTCCGCGTCATTACTACTG  238

Query  239  T---CTTCGCTGACGGTAGTAATATAGGCGGCCCAACGATCAAAGTGGCAAATGGCGCTT  295
            |   ||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct  239  TAGTCTTTGCTGACGATAGTAATATAGGCGGCCCAACAATCAAAGTGGCGAATGGCGCCT  298

Query  296  GGATCGATCAATCTTTCTCGATTGATTCGTCTTCCAAGAATCTCTTTGAGAATTTTTTCA  355
            |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct  299  GGATCGATCAATCTTTCTCGATTGATTCGTCTTCTAAGAATCTCTTCGAGATTTTTTTCA  358

Query  356  AAGCTG  361
            ||||||
Sbjct  359  AAGCTG  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13049211438


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5