BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64030.1 Length=1158 Score E Sequences producing significant alignments: (Bits) Value Ahg474953 jgi|Araly1|474953|fgenesh2_kg.2__83__AT1G64030.1 1611 0.0 Ahg942774 jgi|Araly1|942774|scaffold_603318.1 490 1e-137 > Ahg474953 jgi|Araly1|474953|fgenesh2_kg.2__83__AT1G64030.1 Length=1161 Score = 1611 bits (872), Expect = 0.0 Identities = 1071/1166 (92%), Gaps = 17/1166 (1%) Strand=Plus/Plus Query 1 ATGGATGTAAGAGAAGCTATGAAGAACCAAACCCACGTTGCCATGATCCTTTCCGGGCAC 60 ||||||||||||| ||||||||||||||||||| | || || |||||||||||| ||||| Sbjct 1 ATGGATGTAAGAGCAGCTATGAAGAACCAAACCGAAGTCGCGATGATCCTTTCCCGGCAC 60 Query 61 GTCTTATCTTCCGCGCCCAAAGACTCTAACGTCATCTTCTCACCGGCGTCAATAAACTCT 120 ||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 61 TTCTTAACTTCCGCGCCGAAAGACTCTAACATCATCTTCTCACCGGCGTCAATAAACTCA 120 Query 121 GCGATCACGATGCACGCCGCTGGTCCCGGAGGTGATTTAGTCTCCGGCCAAATCCTCTCC 180 |||||||| |||||||||||||||||||| |||||| |||||||||| ||| |||||| | Sbjct 121 GCGATCACCATGCACGCCGCTGGTCCCGGCGGTGATGTAGTCTCCGGTCAATTCCTCTAC 180 Query 181 TTCCTAAGATCATCTTCAATTGATGAGCTCAAAACCGTGTTCCGAGAACTAGCCTCCGTC 240 || || ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 181 TTACTCAGATCTTCTTCAATCGATGAGCTCAAAACCGTCTTCCGAGAACTAGCCTCCGTT 240 Query 241 GTCTATGCCGACAGAAGCGCCACCGGCGGCCCAAAGATAACGGCGGCGAATGGCCTTTGG 300 ||||| |||||||| |||| || ||| ||||||||||||||||||||||||||||| ||| Sbjct 241 GTCTACGCCGACAGCAGCGGCAGCGGTGGCCCAAAGATAACGGCGGCGAATGGCCTCTGG 300 Query 301 ATTGATAAATCACTTCCGACTGATCCCAAGTTCAAGGACCTCTTCGAGAACTTCTTTAAG 360 ||||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||| Sbjct 301 ATTGATAAATCACTTCCCACTGATCCCAAGTTCAAGGATCTATTGGAGAACTTCTTCAAG 360 Query 361 GCTGTTTATGTTCCAGTAGATTTCCGATCAGAGGCTGAAGAAGTGCGTA-AGGAGGTGAA 419 |||||||| ||||||||||||||| |||| |||||||||||||||||| | |||||||| Sbjct 361 GCTGTTTACGTTCCAGTAGATTTCAAATCAAAGGCTGAAGAAGTGCGTATA-GAGGTGAA 419 Query 420 TTCATGGGTTGAACATCACACCAATAATCTGATCAAGGATCTTCTTCCTGATGGATCCGT 479 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 420 TTCATGGGTTGAACATCACACCAATAATCTCATCAAGAATCTTCTTCCTGATGGATCCGT 479 Query 480 GACAAGCCTAACCAACAAGATTTACGCAAACGCATTGTCTTTCAAGGGAGCTTGGAAAAG 539 ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || Sbjct 480 GACAAGCCTAACCGACAAGATTTACGCAAACGCATTGTATTTCAAGGGAGCTTGGAAGAG 539 Query 540 ACCATTTGAAAAGTACTATACAAGAGATA-ATGACTTCTACCTTGTCAATGGCACAT-CA 597 ||||||||||||||||| ||||||||| | | |||||| |||||||||||||||| | || Sbjct 540 ACCATTTGAAAAGTACTGTACAAGAGACAGA-GACTTCCACCTTGTCAATGGCAC-TACA 597 Query 598 GTCTCTGTGCCATTCATGTCCAGCTATGAGAACCAATACGTAAGAGCTTATGACGGTTTC 657 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 598 GTCTCTGTACCATTCATGACCAGCTATGAGAACCAATACGTAAGAGCTTATGACGGTTTC 657 Query 658 AAGGTCCTCAGGCTTCCTTACCAACGAGGCAGTGATGATACCAATCGTAAATTCTCAATG 717 |||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||| Sbjct 658 AAGGTCCTCAGGCTCCCTTACCGACGAGGCAGCGATGATACTAATCGTAAATTCTCAATG 717 Query 718 TATTTCTATCTCCCAGACAAGAAAGATGGATTGGATGATCTCT-TGGAGAAAATGGCATC 776 ||||||||||| || ||||||||||||||||||||| |||| | |||||||||||| ||| Sbjct 718 TATTTCTATCTTCCGGACAAGAAAGATGGATTGGATAATCT-TGTGGAGAAAATGGTATC 776 Query 777 TACACCTGGATTCTTGGATAGTCACATTCCGACATATAGAGATGAACTTGAGAAATTTAG 836 ||||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| Sbjct 777 TACACGTGGATTCTTGGATAGTCACATTCCGACATACAGAGATGCACTTGAGGAATTTAG 836 Query 837 AATTCCAAAGTTTAAGATCGAATTCGGTTTTTCTGTTACAAGCGTTTTGGATCGATTGGG 896 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 837 AATTCCAAAGTTTAAGATCGAATTCAGTTTTTCTGTTACAAGCATTTTGGATCGATTGGG 896 Query 897 ATTGCGTTCAATGTCAATGTACCATAAAGCTTGTGTCGAGATTGATGAAGAAGGTGCTGA 956 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 ACTGCGTTCAATGTCAATGTACCATAAAGCTTGTGTCGAGATTGATGAAGAAGGTGCTGA 956 Query 957 AGCTGCGGCTGCTACTGCTGATGGAGATTGT-GGTTGTTCTCTTGATTTTGTGGAGCCTC 1015 ||||||||||||||||||||||| || | |||||| ||||||| || | |||||||| Sbjct 957 AGCTGCGGCTGCTACTGCTGATG-AGGGTCAAGGTTGTGCTCTTGAGTTCGAGGAGCCTC 1015 Query 1016 CTAAGAAGATAGATTTTGTGGCCGATCATCCATTTCTTTTCTTGATTCGAGAAGAAAAAA 1075 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1016 CTAAGAAGATAGATTTTGTGGCTGATCATCCATTTCTTTTCTTGATTCGAGAAGACAAAA 1075 Query 1076 CTGGAACCGTTTTGTTCGTTGGTCAGATCTTTGATCCTTCGGGACCTTGTTCGGGATCTA 1135 |||||||||||||||| | | ||| |||||| ||||||||| | ||||||||||| ||| Sbjct 1076 CTGGAACCGTTTTGTT-G--G-TCAAATCTTTAATCCTTCGGAATCTTGTTCGGGAGCTA 1131 Query 1136 ATT---CGGACTCAGATGACTATTAA 1158 ||| |||||||||||||||||||| Sbjct 1132 ATTATTCGGACTCAGATGACTATTAA 1157 > Ahg942774 jgi|Araly1|942774|scaffold_603318.1 Length=534 Score = 490 bits (265), Expect = 1e-137 Identities = 352/395 (89%), Gaps = 2/395 (1%) Strand=Plus/Plus Query 1 ATGGATGTAAGAGAAGCTATGAAGAACCAAACCCACGTTGCCATGATCCT-TTCCGGGCA 59 |||||||||||||||||||| ||||| |||||| |||| ||||||||||| || |||||| Sbjct 23 ATGGATGTAAGAGAAGCTATCAAGAAGCAAACCGACGTCGCCATGATCCTCTT-CGGGCA 81 Query 60 CGTCTTATCTTCCGCGCCCAAAGACTCTAACGTCATCTTCTCACCGGCGTCAATAAACTC 119 ||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 82 CGTCTTATCATCCACGCCAAAAGACTCTAACATCATCTTCTCACCGGCGTCAATAAACTC 141 Query 120 TGCGATCACGATGCACGCCGCTGGTCCCGGAGGTGATTTAGTCTCCGGCCAAATCCTCTC 179 ||| ||||| |||| || |||||||||||||||||| ||||| |||| |||||||||| Sbjct 142 TGCAATCACCATGCTTGCAGCTGGTCCCGGAGGTGATGTAGTCGCCGGTAAAATCCTCTC 201 Query 180 CTTCCTAAGATCATCTTCAATTGATGAGCTCAAAACCGTGTTCCGAGAACTAGCCTCCGT 239 |||||| ||||| ||||||||||||||||||||| || | |||||||||||| | ||||| Sbjct 202 CTTCCTCAGATCTTCTTCAATTGATGAGCTCAAAGCCATCTTCCGAGAACTATCGTCCGT 261 Query 240 CGTCTATGCCGACAGAAGCGCCACCGGCGGCCCAAAGATAACGGCGGCGAATGGCCTTTG 299 |||||| |||||||| ||||| | || || |||||||||| ||| | ||||||||| || Sbjct 262 CGTCTACGCCGACAGCAGCGCGAGTGGTGGACCAAAGATAAAGGCAGTGAATGGCCTCTG 321 Query 300 GATTGATAAATCACTTCCGACTGATCCCAAGTTCAAGGACCTCTTCGAGAACTTCTTTAA 359 |||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 322 GATTGAGAAATCACTTCCGACTGATCCTAAGTTCAAGGATCTCTTTGAGAACTTCTTTAA 381 Query 360 GGCTGTTTATGTTCCAGTAGATTTCCGATCAGAGG 394 ||||||||||||||| ||||||||||||||| ||| Sbjct 382 GGCTGTTTATGTTCCTGTAGATTTCCGATCAAAGG 416 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43193264961 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5