BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64030.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474953 jgi|Araly1|474953|fgenesh2_kg.2__83__AT1G64030.1 1611 0.0
Ahg942774 jgi|Araly1|942774|scaffold_603318.1 490 1e-137
> Ahg474953 jgi|Araly1|474953|fgenesh2_kg.2__83__AT1G64030.1
Length=1161
Score = 1611 bits (872), Expect = 0.0
Identities = 1071/1166 (92%), Gaps = 17/1166 (1%)
Strand=Plus/Plus
Query 1 ATGGATGTAAGAGAAGCTATGAAGAACCAAACCCACGTTGCCATGATCCTTTCCGGGCAC 60
||||||||||||| ||||||||||||||||||| | || || |||||||||||| |||||
Sbjct 1 ATGGATGTAAGAGCAGCTATGAAGAACCAAACCGAAGTCGCGATGATCCTTTCCCGGCAC 60
Query 61 GTCTTATCTTCCGCGCCCAAAGACTCTAACGTCATCTTCTCACCGGCGTCAATAAACTCT 120
||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TTCTTAACTTCCGCGCCGAAAGACTCTAACATCATCTTCTCACCGGCGTCAATAAACTCA 120
Query 121 GCGATCACGATGCACGCCGCTGGTCCCGGAGGTGATTTAGTCTCCGGCCAAATCCTCTCC 180
|||||||| |||||||||||||||||||| |||||| |||||||||| ||| |||||| |
Sbjct 121 GCGATCACCATGCACGCCGCTGGTCCCGGCGGTGATGTAGTCTCCGGTCAATTCCTCTAC 180
Query 181 TTCCTAAGATCATCTTCAATTGATGAGCTCAAAACCGTGTTCCGAGAACTAGCCTCCGTC 240
|| || ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TTACTCAGATCTTCTTCAATCGATGAGCTCAAAACCGTCTTCCGAGAACTAGCCTCCGTT 240
Query 241 GTCTATGCCGACAGAAGCGCCACCGGCGGCCCAAAGATAACGGCGGCGAATGGCCTTTGG 300
||||| |||||||| |||| || ||| ||||||||||||||||||||||||||||| |||
Sbjct 241 GTCTACGCCGACAGCAGCGGCAGCGGTGGCCCAAAGATAACGGCGGCGAATGGCCTCTGG 300
Query 301 ATTGATAAATCACTTCCGACTGATCCCAAGTTCAAGGACCTCTTCGAGAACTTCTTTAAG 360
||||||||||||||||| |||||||||||||||||||| || || ||||||||||| |||
Sbjct 301 ATTGATAAATCACTTCCCACTGATCCCAAGTTCAAGGATCTATTGGAGAACTTCTTCAAG 360
Query 361 GCTGTTTATGTTCCAGTAGATTTCCGATCAGAGGCTGAAGAAGTGCGTA-AGGAGGTGAA 419
|||||||| ||||||||||||||| |||| |||||||||||||||||| | ||||||||
Sbjct 361 GCTGTTTACGTTCCAGTAGATTTCAAATCAAAGGCTGAAGAAGTGCGTATA-GAGGTGAA 419
Query 420 TTCATGGGTTGAACATCACACCAATAATCTGATCAAGGATCTTCTTCCTGATGGATCCGT 479
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 420 TTCATGGGTTGAACATCACACCAATAATCTCATCAAGAATCTTCTTCCTGATGGATCCGT 479
Query 480 GACAAGCCTAACCAACAAGATTTACGCAAACGCATTGTCTTTCAAGGGAGCTTGGAAAAG 539
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 480 GACAAGCCTAACCGACAAGATTTACGCAAACGCATTGTATTTCAAGGGAGCTTGGAAGAG 539
Query 540 ACCATTTGAAAAGTACTATACAAGAGATA-ATGACTTCTACCTTGTCAATGGCACAT-CA 597
||||||||||||||||| ||||||||| | | |||||| |||||||||||||||| | ||
Sbjct 540 ACCATTTGAAAAGTACTGTACAAGAGACAGA-GACTTCCACCTTGTCAATGGCAC-TACA 597
Query 598 GTCTCTGTGCCATTCATGTCCAGCTATGAGAACCAATACGTAAGAGCTTATGACGGTTTC 657
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTCTCTGTACCATTCATGACCAGCTATGAGAACCAATACGTAAGAGCTTATGACGGTTTC 657
Query 658 AAGGTCCTCAGGCTTCCTTACCAACGAGGCAGTGATGATACCAATCGTAAATTCTCAATG 717
|||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 658 AAGGTCCTCAGGCTCCCTTACCGACGAGGCAGCGATGATACTAATCGTAAATTCTCAATG 717
Query 718 TATTTCTATCTCCCAGACAAGAAAGATGGATTGGATGATCTCT-TGGAGAAAATGGCATC 776
||||||||||| || ||||||||||||||||||||| |||| | |||||||||||| |||
Sbjct 718 TATTTCTATCTTCCGGACAAGAAAGATGGATTGGATAATCT-TGTGGAGAAAATGGTATC 776
Query 777 TACACCTGGATTCTTGGATAGTCACATTCCGACATATAGAGATGAACTTGAGAAATTTAG 836
||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct 777 TACACGTGGATTCTTGGATAGTCACATTCCGACATACAGAGATGCACTTGAGGAATTTAG 836
Query 837 AATTCCAAAGTTTAAGATCGAATTCGGTTTTTCTGTTACAAGCGTTTTGGATCGATTGGG 896
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 837 AATTCCAAAGTTTAAGATCGAATTCAGTTTTTCTGTTACAAGCATTTTGGATCGATTGGG 896
Query 897 ATTGCGTTCAATGTCAATGTACCATAAAGCTTGTGTCGAGATTGATGAAGAAGGTGCTGA 956
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACTGCGTTCAATGTCAATGTACCATAAAGCTTGTGTCGAGATTGATGAAGAAGGTGCTGA 956
Query 957 AGCTGCGGCTGCTACTGCTGATGGAGATTGT-GGTTGTTCTCTTGATTTTGTGGAGCCTC 1015
||||||||||||||||||||||| || | |||||| ||||||| || | ||||||||
Sbjct 957 AGCTGCGGCTGCTACTGCTGATG-AGGGTCAAGGTTGTGCTCTTGAGTTCGAGGAGCCTC 1015
Query 1016 CTAAGAAGATAGATTTTGTGGCCGATCATCCATTTCTTTTCTTGATTCGAGAAGAAAAAA 1075
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1016 CTAAGAAGATAGATTTTGTGGCTGATCATCCATTTCTTTTCTTGATTCGAGAAGACAAAA 1075
Query 1076 CTGGAACCGTTTTGTTCGTTGGTCAGATCTTTGATCCTTCGGGACCTTGTTCGGGATCTA 1135
|||||||||||||||| | | ||| |||||| ||||||||| | ||||||||||| |||
Sbjct 1076 CTGGAACCGTTTTGTT-G--G-TCAAATCTTTAATCCTTCGGAATCTTGTTCGGGAGCTA 1131
Query 1136 ATT---CGGACTCAGATGACTATTAA 1158
||| ||||||||||||||||||||
Sbjct 1132 ATTATTCGGACTCAGATGACTATTAA 1157
> Ahg942774 jgi|Araly1|942774|scaffold_603318.1
Length=534
Score = 490 bits (265), Expect = 1e-137
Identities = 352/395 (89%), Gaps = 2/395 (1%)
Strand=Plus/Plus
Query 1 ATGGATGTAAGAGAAGCTATGAAGAACCAAACCCACGTTGCCATGATCCT-TTCCGGGCA 59
|||||||||||||||||||| ||||| |||||| |||| ||||||||||| || ||||||
Sbjct 23 ATGGATGTAAGAGAAGCTATCAAGAAGCAAACCGACGTCGCCATGATCCTCTT-CGGGCA 81
Query 60 CGTCTTATCTTCCGCGCCCAAAGACTCTAACGTCATCTTCTCACCGGCGTCAATAAACTC 119
||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 82 CGTCTTATCATCCACGCCAAAAGACTCTAACATCATCTTCTCACCGGCGTCAATAAACTC 141
Query 120 TGCGATCACGATGCACGCCGCTGGTCCCGGAGGTGATTTAGTCTCCGGCCAAATCCTCTC 179
||| ||||| |||| || |||||||||||||||||| ||||| |||| ||||||||||
Sbjct 142 TGCAATCACCATGCTTGCAGCTGGTCCCGGAGGTGATGTAGTCGCCGGTAAAATCCTCTC 201
Query 180 CTTCCTAAGATCATCTTCAATTGATGAGCTCAAAACCGTGTTCCGAGAACTAGCCTCCGT 239
|||||| ||||| ||||||||||||||||||||| || | |||||||||||| | |||||
Sbjct 202 CTTCCTCAGATCTTCTTCAATTGATGAGCTCAAAGCCATCTTCCGAGAACTATCGTCCGT 261
Query 240 CGTCTATGCCGACAGAAGCGCCACCGGCGGCCCAAAGATAACGGCGGCGAATGGCCTTTG 299
|||||| |||||||| ||||| | || || |||||||||| ||| | ||||||||| ||
Sbjct 262 CGTCTACGCCGACAGCAGCGCGAGTGGTGGACCAAAGATAAAGGCAGTGAATGGCCTCTG 321
Query 300 GATTGATAAATCACTTCCGACTGATCCCAAGTTCAAGGACCTCTTCGAGAACTTCTTTAA 359
|||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 322 GATTGAGAAATCACTTCCGACTGATCCTAAGTTCAAGGATCTCTTTGAGAACTTCTTTAA 381
Query 360 GGCTGTTTATGTTCCAGTAGATTTCCGATCAGAGG 394
||||||||||||||| ||||||||||||||| |||
Sbjct 382 GGCTGTTTATGTTCCTGTAGATTTCCGATCAAAGG 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5