BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64035.1 Length=2241 Score E Sequences producing significant alignments: (Bits) Value Ahg924545 jgi|Araly1|924545|scaffold_200106.1 590 2e-167 Ahg480348 jgi|Araly1|480348|fgenesh2_kg.3__3049__AT2G14540.1 540 2e-152 Ahg895088 jgi|Araly1|895088|Al_scaffold_0006_3084 470 2e-131 Ahg474953 jgi|Araly1|474953|fgenesh2_kg.2__83__AT1G64030.1 374 2e-102 Ahg475018 jgi|Araly1|475018|fgenesh2_kg.2__148__AT1G63280.1 272 7e-72 > Ahg924545 jgi|Araly1|924545|scaffold_200106.1 Length=574 Score = 590 bits (319), Expect = 2e-167 Identities = 365/388 (94%), Gaps = 0/388 (0%) Strand=Plus/Plus Query 1019 CAAGAAGCGATGAAGAAGCAAAACGACGTTGCTCTTTTCCTTGCGGGGGAAGTAATCTCT 1078 ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| Sbjct 141 CAAGAAGCGATGAAGAAGCAAAACGACGTTGCTCTGTTCCTTGCAGGGAAAGTAATCTCT 200 Query 1079 GCCGCAGACAAAAACTCTAACGTCGTCTTCTCTCCTGCATCTATCAACTCCGTTCTCACC 1138 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 201 ACCGTAGACAAAAACTCTAACTTCGTCTTCTCTCCTGCATCTATCAACTCCGTTCTCACC 260 Query 1139 ATGGCCGCTGCTACCTCCGACAGTGAAGCACTAAAATCTTGCATCCTCTCCTTCCTTAGG 1198 ||| ||||||| |||||||| |||| |||||||||| |||||||||||||| |||||| Sbjct 261 ATGTTGGCTGCTATCTCCGACAATGAAACACTAAAATCCTGCATCCTCTCCTTTCTTAGG 320 Query 1199 TCTTCTTCCACCGACGAGCTCAACGACATCTTCCGCGAAATAGCTTCCGTCGTCCTCGTC 1258 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 321 TCTTCTTCCACCGACGAGCTCAACGACATCTTCCGCGAAATCGCTTCCGTCGTCCTCGTC 380 Query 1259 GACGGAAGCAAAACAGGTGGCCCCAAAATCACGGTGGTTAATGGAGTGTGGAGAGAGCAA 1318 ||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||| Sbjct 381 GACGGAAGCAAAAGAGGTGGCCCCAAAATCGCAGTGGCTAATGGAGTGTGGAGAGAGCAA 440 Query 1319 TCACTTCCGTGTAGTCCCGAGTCGAAAGATCTCTTTGAGAATTTCTACAAGTCTGCTTTC 1378 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| Sbjct 441 TCACTTCCGTGTAGTCCCGAGTCGAAAGATCTCTTTGAGAATTTCTTCAAGGCTGATTTT 500 Query 1379 GCTCAAGTTGATTTCCGATCCAAGGTCA 1406 |||||||||||||||||||||||||||| Sbjct 501 GCTCAAGTTGATTTCCGATCCAAGGTCA 528 > Ahg480348 jgi|Araly1|480348|fgenesh2_kg.3__3049__AT2G14540.1 Length=1288 Score = 540 bits (292), Expect = 2e-152 Identities = 579/711 (81%), Gaps = 45/711 (6%) Strand=Plus/Plus Query 1546 TGGGCATT-ACGTCACACCAATGGTATCATCAAAGATCTTCTACCTCCTGGATCCGTTAC 1604 ||||| || |||||||||||||| |||||||||||||||| ||| |||||| ||||| Sbjct 502 TGGGC-TTCACGTCACACCAATGACCTCATCAAAGATCTTCTTCCTTATGGATCTGTTAC 560 Query 1605 AAGCGAAACCT--TGTGGATTTATGGAAACGCATTGTACTTCAAAGGAGCCTGGGAAGAC 1662 |||| || || | ||||| ||||||||||||||||||||||| ||||| |||||| | Sbjct 561 AAGCCTAA-CTAAT-TGGATATATGGAAACGCATTGTACTTCAAGGGAGCTTGGGAAAAG 618 Query 1663 AAATTCT-ATAAGTCAATGACGAAACACAAACC-TTTCTACCTTGTCAATGGCAAA-CAA 1719 |||| | ||||||| ||||| ||| | ||||| |||| ||||| |||||| |||| | | Sbjct 619 GAATT-TGATAAGTCCATGACAAAAGAGAAACCATTTC-ACCTTCTCAATGACAAATC-A 675 Query 1720 GTAC-ATGTGCCATTCATGCA-AAGCTCACAA-AGTCAATATGTTA-AGGCTTACGATGG 1775 || | |||||| |||||| | ||||| |||| || |||| | || ||||||| ||||| Sbjct 676 GT-CTCTGTGCCTTTCATG-AGAAGCT-ACAAGAGGCAAT-TCATAGAGGCTTATGATGG 731 Query 1776 TTTCAAGGTCCT-TAGACAACCATACCGAC-AAGGCGTTAATGATA-CAAGTCGCCAA-T 1831 |||||| ||||| || | || || |||| ||| || | |||||| ||| || ||| | Sbjct 732 TTTCAAAGTCCTCAAG-CTTCCTTATCGACAAAGCCG-TGATGATACCAA-CCG-CAAGT 787 Query 1832 TCTCAATGTGTAC-CTATCTCCCGGACGAGAAAGATGGATTGGATAATCTTGTGGAGAAA 1890 | || |||| | | ||||||||| ||| |||||| || ||||||||||||| |||||| | Sbjct 788 TTTCCATGTAT-CTCTATCTCCCTGACAAGAAAGGTGAATTGGATAATCTTTTGGAGAGA 846 Query 1891 ATGACATCTACTGATGGATTCTTGGACAGTCACATTCCGAGTTGGAGAGTTGAAGTTGGT 1950 |||||||||||| |||||||||||| ||||| ||||||| | ||||||| |||||| Sbjct 847 ATGACATCTACTCCTGGATTCTTGGATAGTCATATTCCGAAATACCGAGTTGATGTTGGT 906 Query 1951 GAATTCAGAATTCCAAAGTTTAAGATTGAATTCGGTTTTGAAGCTTCAAGCGTTTTCAAT 2010 || |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||| Sbjct 907 GATTTCAGAATTCCAAAATTTAAGATCGAATTCGGTTTTGAAGCTTCAAGTGTTTTTAAT 966 Query 2011 GA---CTTTGCGCTTGATGTATCATTATACCAAAAAGCTATGATTGAGATTGATGAAGAA 2067 || ||||| |||| | || |||||||| || |||||| |||||||||||||||||||| Sbjct 967 GACGTCTTTGAGCTTAAAGTGTCATTATATCAGAAAGCTTTGATTGAGATTGATGAAGAA 1026 Query 2068 GGTACTGAAGCTGCGGCTGCTACTGCTCTAGTTG-GTGCTTGT--GGCTGCAGC-C-TTT 2122 ||||||||||||||||||||||||||| | || | ||| || ||| || | | ||| Sbjct 1027 GGTACTGAAGCTGCGGCTGCTACTGCTTTTGTCGTGTGTTTAACCGGCAGCTGTGCGTTT 1086 Query 2123 ATAGGCCTCCTCCTCCCATAGATTTTGTGGCAGATCATCCAttttttttCTTT-ATTAGA 2181 || || ||||||||||||||||| ||||||||| | || ||| |||||| Sbjct 1087 G-AG-CCGGAGAAG---ATAGATTTTGTGGCAGAACATCCATTTCTCTT-TTTGATTAGA 1140 Query 2182 GAAGACAAAACCGGAACTGTTTTGTTCGCTGGTCAAATCTTCGATCCTTCC 2232 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GAAGACAAAACCGGAACTGTTTTGTTCGCTGGTCAAATCTTCGATCCTTCC 1191 > Ahg895088 jgi|Araly1|895088|Al_scaffold_0006_3084 Length=489 Score = 470 bits (254), Expect = 2e-131 Identities = 372/428 (87%), Gaps = 11/428 (3%) Strand=Plus/Plus Query 993 ACGACGAAGAAGCAAAACG-TCCATGT-CAAGAAGCGATGAAGAAGCAAAACGACGTTGC 1050 |||| ||| |||||||| | | |||| ||| ||||||||| ||||||||||||||||| Sbjct 67 ACGAAGAAAAAGCAAAA-GATGGATGTGAAAGGAGCGATGAACAAGCAAAACGACGTTGC 125 Query 1051 TCTTTTCCTTGCGGGGGAAGTAATCTCTGCCGCAGACAAAAACTCTAACGTCGTCTTCTC 1110 ||| |||||||||||| |||||||||||||| || ||||||||||||| |||||||||| Sbjct 126 TCTGTTCCTTGCGGGGAAAGTAATCTCTGCCATAGCCAAAAACTCTAACTTCGTCTTCTC 185 Query 1111 TCCTGCATCTATCAACTCCGTTCTCACCATGGCCGCTGCTACCTCCGACAGT-GAAGCAC 1169 ||| |||||||||||||| |||||||||||| ||||||||||| |||||| | ||| || Sbjct 186 TCCGGCATCTATCAACTCTGTTCTCACCATGACCGCTGCTACCACCGACA-TCGAAAAAC 244 Query 1170 TAAAAT-CTTGCATCCTCTCCTTCCTTAGGTCTTCTTCCACCGACGAGCTCAACGACA-T 1227 ||| || ||| |||||||||||| ||||||||||||||||| | ||| ||||||| || | Sbjct 245 TAAGATCCTT-CATCCTCTCCTTTCTTAGGTCTTCTTCCACTGGCGAACTCAACG-CAGT 302 Query 1228 CTTCCGCGAAATAGCTTCCGTCGTCCTCGTCGACGGAAGCAAAACAGGTGGCCCCAAAAT 1287 ||| | ||||| ||||||||||||||||| ||||||||||||| |||||| || ||||| Sbjct 303 TTTCAGTGAAATCGCTTCCGTCGTCCTCGTTGACGGAAGCAAAAGAGGTGGGCCAAAAAT 362 Query 1288 CACGGTGGTTAATGGAGTGTGGAGAGAGCAATCACTTCCGTGTAGTCCCGAGTCGAAAGA 1347 | || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 363 CGTGGCGGTTAATGGAGTGTGGATAGAGCAATCACTTTCGTGTAGTCCCGAGTCGAAAGA 422 Query 1348 TCTCTTTGAGAATTTCTACAAGTCTGCTTTCGCTCAAGTTGATTTCCGATC-CAAGGTCA 1406 ||||||||||||||| | |||| || ||| ||||||||||||||||| | | |||||| Sbjct 423 TCTCTTTGAGAATTTTTTCAAGGCTACTTACGCTCAAGTTGATTTCCTA-CACAAGGTTG 481 Query 1407 GTTTCTGA 1414 |||||||| Sbjct 482 GTTTCTGA 489 > Ahg474953 jgi|Araly1|474953|fgenesh2_kg.2__83__AT1G64030.1 Length=1161 Score = 374 bits (202), Expect = 2e-102 Identities = 581/752 (77%), Gaps = 74/752 (10%) Strand=Plus/Plus Query 1518 TGAAGAAGTGCGTGA-GGAGGTGAATTCTTGGGCATT--ACGTCACACCAATGGTATCAT 1574 ||||||||||||| | ||||||||||| |||| || || |||||||||| | |||| Sbjct 396 TGAAGAAGTGCGT-ATAGAGGTGAATTCATGGG--TTGAACATCACACCAATAATCTCAT 452 Query 1575 CAAAG-ATCTTCTACCTCCTGGATCCGTTACAAGCGAAACCTTGTGGATTTATGGAAACG 1633 | ||| ||||||| ||| ||||||||| |||||| |||| |||||| | ||||| Sbjct 453 C-AAGAATCTTCTTCCTGATGGATCCGTGACAAGCCTAACCGACAAGATTTACGCAAACG 511 Query 1634 CATTGTACTTCAAAGGAGCCTGGGAAGACA-AATTCT-ATAAGTCAATG-ACGAA-ACAC 1689 ||||||| ||||| |||| || |||||| | ||| | | |||| | || || || | || Sbjct 512 CATTGTATTTCAAGGGAG-CTTGGAAGAGACCATT-TGAAAAGT-ACTGTAC-AAGAGAC 567 Query 1690 A-A-ACCTTTCTACCTTGTCAATGGCA-AACAAGTAC-ATGTGCCATTCATGCA-AAGCT 1744 | | | | ||| ||||||||||||||| || ||| | ||| ||||||||| | |||| Sbjct 568 AGAGA-C-TTCCACCTTGTCAATGGCACTAC-AGT-CTCTGTACCATTCATG-ACCAGCT 622 Query 1745 CA-CA-AAGTCAATATGTTAAG-GCTTACGATGGTTTCAAGGTCCTTAGACAACCATACC 1801 | | || ||||| | |||| ||||| || |||||||||||||| || | || |||| Sbjct 623 -ATGAGAA-CCAATACG-TAAGAGCTTATGACGGTTTCAAGGTCCTCAGGCTCCCTTACC 679 Query 1802 GACAAGGC-GTTAATGATAC-AAGTCGCCAATTCTCAATGTGTACCTATCTCCCGGACGA 1859 ||| |||| | ||||||| || ||| |||||||||||| | |||||| |||||| | Sbjct 680 GACGAGGCAG-CGATGATACTAA-TCGTAAATTCTCAATGTATTTCTATCTTCCGGACAA 737 Query 1860 GAAAGATGGATTGGATAATCTTGTGGAGAAAATGACATCTACT-GATGGATTCTTGGACA 1918 |||||||||||||||||||||||||||||||||| |||||| | |||||||||||| | Sbjct 738 GAAAGATGGATTGGATAATCTTGTGGAGAAAATGGTATCTACACG-TGGATTCTTGGATA 796 Query 1919 GTCACATTCCGAGTTGGAGAGTTGAAGTTG-GTGAATTCAGAATTCCAAAGTTTAAGATT 1977 |||||||||||| | |||| || | ||| | ||||| |||||||||||||||||||| Sbjct 797 GTCACATTCCGACATACAGAGATGCACTTGAG-GAATTTAGAATTCCAAAGTTTAAGATC 855 Query 1978 GAATTCGGTTTTGAAGCTT-CAAGCGTTTTCAAT-GACTTTG--C-GC-TTGA-TGTATC 2030 |||||| ||||| | || ||||| |||| || || || | | || || | ||| | Sbjct 856 GAATTCAGTTTTTCTG-TTACAAGCATTTTGGATCGA-TTGGGACTGCGTTCAATGT--C 911 Query 2031 ATTATACCAAAAAGCTATGAT-T-GAGATTGATGAAGAAGGTACTGAAGCTGCGGCTGCT 2088 | | ||||| |||||| || | | |||||||||||||||||| ||||||||||||||||| Sbjct 912 AATGTACCATAAAGCT-TG-TGTCGAGATTGATGAAGAAGGTGCTGAAGCTGCGGCTGCT 969 Query 2089 ACTGCTC-T-AGTTGGT---GCTTGTGG-CT-GCAGCCTTT-AT-AGGCCTCCTCCTCCC 2139 |||||| | || ||| | ||||| || | || || | || |||||| Sbjct 970 ACTGCTGATGAG--GGTCAAGGTTGTGCTCTTG-AG--TTCGAGGAG-CCTCCTAAGAAG 1023 Query 2140 ATAGATTTTGTGGCAGATCATCCAttttttttCTTTATTAGAGAAGACAAAACCGGAACT 2199 |||||||||||||| |||||||||||| ||||||| ||| ||||||||||||| ||||| Sbjct 1024 ATAGATTTTGTGGCTGATCATCCATTTCTTTTCTTGATTCGAGAAGACAAAACTGGAACC 1083 Query 2200 GTTTTGTTCGCTGGTCAAATCTTCGATCCTTC 2231 |||||||| | | ||||||||| ||||||| Sbjct 1084 GTTTTGTT-G--G-TCAAATCTTTAATCCTTC 1111 > Ahg475018 jgi|Araly1|475018|fgenesh2_kg.2__148__AT1G63280.1 Length=329 Score = 272 bits (147), Expect = 7e-72 Identities = 272/330 (82%), Gaps = 18/330 (5%) Strand=Plus/Plus Query 1518 TGAAGAAGTGCGTGAG-GAGGTGAATTCTTGGGCATTACG-TCACACCAATGGTATCATC 1575 |||| |||||||| | ||| ||||| ||||| || || ||||||||||||| ||||| Sbjct 9 TGAACAAGTGCGT-CGTGAGCTGAATAAATGGGC-TTCCGATCACACCAATGGTCTCATC 66 Query 1576 AAAGATCTTCTACCTCCTGGATCCGTTACAAGCGAAACC-TTGTGGATTTATGGAAACGC 1634 | ||| ||||| |||||||||||||||| |||||||||| || || ||||||||||||| Sbjct 67 AGAGACCTTCTTCCTCCTGGATCCGTTAAAAGCGAAACCGTTCAGG-TTTATGGAAACGC 125 Query 1635 ATTGTACTTCAAAGGAGCCTGGGAAGACAAATTCT-ATAAGTCAATGACGAAACA-CAA- 1691 |||||||||||||||||| |||||| ||||||| | | ||||| | || ||| | ||| Sbjct 126 ATTGTACTTCAAAGGAGCATGGGAAAACAAATT-TGACAAGTCTTTAACCAAA-ATCAAC 183 Query 1692 ACCTTTCTACCTTGTCAATGGCAAACAAGTACATGTGCCATTCATGCA-AAGCTCACAAA 1750 | |||| | || || |||||||||||||||||||||| |||||| | ||||| | ||| Sbjct 184 AAGTTTC-ATCTACTCGATGGCAAACAAGTACATGTGCCTTTCATG-AGAAGCT-ATAAA 240 Query 1751 -GTCAATATGTTAAGGCTTACGATGGTTTCAAGGTCCTTAGACAACCATACCGACAAGGC 1809 |||||||| | ||||||||||||||||||||||||||| ||| |||||||| ||||||| Sbjct 241 AGTCAATATATCAAGGCTTACGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGC 300 Query 1810 GTTAATGATAC-AAGTCGCCAATTCTCAAT 1838 | ||||||| || || |||||||||| Sbjct 301 CATGATGATACCAAA-CGAAAATTCTCAAT 329 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84369892675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5