BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64035.1
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924545 jgi|Araly1|924545|scaffold_200106.1 590 2e-167
Ahg480348 jgi|Araly1|480348|fgenesh2_kg.3__3049__AT2G14540.1 540 2e-152
Ahg895088 jgi|Araly1|895088|Al_scaffold_0006_3084 470 2e-131
Ahg474953 jgi|Araly1|474953|fgenesh2_kg.2__83__AT1G64030.1 374 2e-102
Ahg475018 jgi|Araly1|475018|fgenesh2_kg.2__148__AT1G63280.1 272 7e-72
> Ahg924545 jgi|Araly1|924545|scaffold_200106.1
Length=574
Score = 590 bits (319), Expect = 2e-167
Identities = 365/388 (94%), Gaps = 0/388 (0%)
Strand=Plus/Plus
Query 1019 CAAGAAGCGATGAAGAAGCAAAACGACGTTGCTCTTTTCCTTGCGGGGGAAGTAATCTCT 1078
||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 141 CAAGAAGCGATGAAGAAGCAAAACGACGTTGCTCTGTTCCTTGCAGGGAAAGTAATCTCT 200
Query 1079 GCCGCAGACAAAAACTCTAACGTCGTCTTCTCTCCTGCATCTATCAACTCCGTTCTCACC 1138
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 201 ACCGTAGACAAAAACTCTAACTTCGTCTTCTCTCCTGCATCTATCAACTCCGTTCTCACC 260
Query 1139 ATGGCCGCTGCTACCTCCGACAGTGAAGCACTAAAATCTTGCATCCTCTCCTTCCTTAGG 1198
||| ||||||| |||||||| |||| |||||||||| |||||||||||||| ||||||
Sbjct 261 ATGTTGGCTGCTATCTCCGACAATGAAACACTAAAATCCTGCATCCTCTCCTTTCTTAGG 320
Query 1199 TCTTCTTCCACCGACGAGCTCAACGACATCTTCCGCGAAATAGCTTCCGTCGTCCTCGTC 1258
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 321 TCTTCTTCCACCGACGAGCTCAACGACATCTTCCGCGAAATCGCTTCCGTCGTCCTCGTC 380
Query 1259 GACGGAAGCAAAACAGGTGGCCCCAAAATCACGGTGGTTAATGGAGTGTGGAGAGAGCAA 1318
||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 381 GACGGAAGCAAAAGAGGTGGCCCCAAAATCGCAGTGGCTAATGGAGTGTGGAGAGAGCAA 440
Query 1319 TCACTTCCGTGTAGTCCCGAGTCGAAAGATCTCTTTGAGAATTTCTACAAGTCTGCTTTC 1378
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 441 TCACTTCCGTGTAGTCCCGAGTCGAAAGATCTCTTTGAGAATTTCTTCAAGGCTGATTTT 500
Query 1379 GCTCAAGTTGATTTCCGATCCAAGGTCA 1406
||||||||||||||||||||||||||||
Sbjct 501 GCTCAAGTTGATTTCCGATCCAAGGTCA 528
> Ahg480348 jgi|Araly1|480348|fgenesh2_kg.3__3049__AT2G14540.1
Length=1288
Score = 540 bits (292), Expect = 2e-152
Identities = 579/711 (81%), Gaps = 45/711 (6%)
Strand=Plus/Plus
Query 1546 TGGGCATT-ACGTCACACCAATGGTATCATCAAAGATCTTCTACCTCCTGGATCCGTTAC 1604
||||| || |||||||||||||| |||||||||||||||| ||| |||||| |||||
Sbjct 502 TGGGC-TTCACGTCACACCAATGACCTCATCAAAGATCTTCTTCCTTATGGATCTGTTAC 560
Query 1605 AAGCGAAACCT--TGTGGATTTATGGAAACGCATTGTACTTCAAAGGAGCCTGGGAAGAC 1662
|||| || || | ||||| ||||||||||||||||||||||| ||||| |||||| |
Sbjct 561 AAGCCTAA-CTAAT-TGGATATATGGAAACGCATTGTACTTCAAGGGAGCTTGGGAAAAG 618
Query 1663 AAATTCT-ATAAGTCAATGACGAAACACAAACC-TTTCTACCTTGTCAATGGCAAA-CAA 1719
|||| | ||||||| ||||| ||| | ||||| |||| ||||| |||||| |||| | |
Sbjct 619 GAATT-TGATAAGTCCATGACAAAAGAGAAACCATTTC-ACCTTCTCAATGACAAATC-A 675
Query 1720 GTAC-ATGTGCCATTCATGCA-AAGCTCACAA-AGTCAATATGTTA-AGGCTTACGATGG 1775
|| | |||||| |||||| | ||||| |||| || |||| | || ||||||| |||||
Sbjct 676 GT-CTCTGTGCCTTTCATG-AGAAGCT-ACAAGAGGCAAT-TCATAGAGGCTTATGATGG 731
Query 1776 TTTCAAGGTCCT-TAGACAACCATACCGAC-AAGGCGTTAATGATA-CAAGTCGCCAA-T 1831
|||||| ||||| || | || || |||| ||| || | |||||| ||| || ||| |
Sbjct 732 TTTCAAAGTCCTCAAG-CTTCCTTATCGACAAAGCCG-TGATGATACCAA-CCG-CAAGT 787
Query 1832 TCTCAATGTGTAC-CTATCTCCCGGACGAGAAAGATGGATTGGATAATCTTGTGGAGAAA 1890
| || |||| | | ||||||||| ||| |||||| || ||||||||||||| |||||| |
Sbjct 788 TTTCCATGTAT-CTCTATCTCCCTGACAAGAAAGGTGAATTGGATAATCTTTTGGAGAGA 846
Query 1891 ATGACATCTACTGATGGATTCTTGGACAGTCACATTCCGAGTTGGAGAGTTGAAGTTGGT 1950
|||||||||||| |||||||||||| ||||| ||||||| | ||||||| ||||||
Sbjct 847 ATGACATCTACTCCTGGATTCTTGGATAGTCATATTCCGAAATACCGAGTTGATGTTGGT 906
Query 1951 GAATTCAGAATTCCAAAGTTTAAGATTGAATTCGGTTTTGAAGCTTCAAGCGTTTTCAAT 2010
|| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 907 GATTTCAGAATTCCAAAATTTAAGATCGAATTCGGTTTTGAAGCTTCAAGTGTTTTTAAT 966
Query 2011 GA---CTTTGCGCTTGATGTATCATTATACCAAAAAGCTATGATTGAGATTGATGAAGAA 2067
|| ||||| |||| | || |||||||| || |||||| ||||||||||||||||||||
Sbjct 967 GACGTCTTTGAGCTTAAAGTGTCATTATATCAGAAAGCTTTGATTGAGATTGATGAAGAA 1026
Query 2068 GGTACTGAAGCTGCGGCTGCTACTGCTCTAGTTG-GTGCTTGT--GGCTGCAGC-C-TTT 2122
||||||||||||||||||||||||||| | || | ||| || ||| || | | |||
Sbjct 1027 GGTACTGAAGCTGCGGCTGCTACTGCTTTTGTCGTGTGTTTAACCGGCAGCTGTGCGTTT 1086
Query 2123 ATAGGCCTCCTCCTCCCATAGATTTTGTGGCAGATCATCCAttttttttCTTT-ATTAGA 2181
|| || ||||||||||||||||| ||||||||| | || ||| ||||||
Sbjct 1087 G-AG-CCGGAGAAG---ATAGATTTTGTGGCAGAACATCCATTTCTCTT-TTTGATTAGA 1140
Query 2182 GAAGACAAAACCGGAACTGTTTTGTTCGCTGGTCAAATCTTCGATCCTTCC 2232
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAAGACAAAACCGGAACTGTTTTGTTCGCTGGTCAAATCTTCGATCCTTCC 1191
> Ahg895088 jgi|Araly1|895088|Al_scaffold_0006_3084
Length=489
Score = 470 bits (254), Expect = 2e-131
Identities = 372/428 (87%), Gaps = 11/428 (3%)
Strand=Plus/Plus
Query 993 ACGACGAAGAAGCAAAACG-TCCATGT-CAAGAAGCGATGAAGAAGCAAAACGACGTTGC 1050
|||| ||| |||||||| | | |||| ||| ||||||||| |||||||||||||||||
Sbjct 67 ACGAAGAAAAAGCAAAA-GATGGATGTGAAAGGAGCGATGAACAAGCAAAACGACGTTGC 125
Query 1051 TCTTTTCCTTGCGGGGGAAGTAATCTCTGCCGCAGACAAAAACTCTAACGTCGTCTTCTC 1110
||| |||||||||||| |||||||||||||| || ||||||||||||| ||||||||||
Sbjct 126 TCTGTTCCTTGCGGGGAAAGTAATCTCTGCCATAGCCAAAAACTCTAACTTCGTCTTCTC 185
Query 1111 TCCTGCATCTATCAACTCCGTTCTCACCATGGCCGCTGCTACCTCCGACAGT-GAAGCAC 1169
||| |||||||||||||| |||||||||||| ||||||||||| |||||| | ||| ||
Sbjct 186 TCCGGCATCTATCAACTCTGTTCTCACCATGACCGCTGCTACCACCGACA-TCGAAAAAC 244
Query 1170 TAAAAT-CTTGCATCCTCTCCTTCCTTAGGTCTTCTTCCACCGACGAGCTCAACGACA-T 1227
||| || ||| |||||||||||| ||||||||||||||||| | ||| ||||||| || |
Sbjct 245 TAAGATCCTT-CATCCTCTCCTTTCTTAGGTCTTCTTCCACTGGCGAACTCAACG-CAGT 302
Query 1228 CTTCCGCGAAATAGCTTCCGTCGTCCTCGTCGACGGAAGCAAAACAGGTGGCCCCAAAAT 1287
||| | ||||| ||||||||||||||||| ||||||||||||| |||||| || |||||
Sbjct 303 TTTCAGTGAAATCGCTTCCGTCGTCCTCGTTGACGGAAGCAAAAGAGGTGGGCCAAAAAT 362
Query 1288 CACGGTGGTTAATGGAGTGTGGAGAGAGCAATCACTTCCGTGTAGTCCCGAGTCGAAAGA 1347
| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 363 CGTGGCGGTTAATGGAGTGTGGATAGAGCAATCACTTTCGTGTAGTCCCGAGTCGAAAGA 422
Query 1348 TCTCTTTGAGAATTTCTACAAGTCTGCTTTCGCTCAAGTTGATTTCCGATC-CAAGGTCA 1406
||||||||||||||| | |||| || ||| ||||||||||||||||| | | ||||||
Sbjct 423 TCTCTTTGAGAATTTTTTCAAGGCTACTTACGCTCAAGTTGATTTCCTA-CACAAGGTTG 481
Query 1407 GTTTCTGA 1414
||||||||
Sbjct 482 GTTTCTGA 489
> Ahg474953 jgi|Araly1|474953|fgenesh2_kg.2__83__AT1G64030.1
Length=1161
Score = 374 bits (202), Expect = 2e-102
Identities = 581/752 (77%), Gaps = 74/752 (10%)
Strand=Plus/Plus
Query 1518 TGAAGAAGTGCGTGA-GGAGGTGAATTCTTGGGCATT--ACGTCACACCAATGGTATCAT 1574
||||||||||||| | ||||||||||| |||| || || |||||||||| | ||||
Sbjct 396 TGAAGAAGTGCGT-ATAGAGGTGAATTCATGGG--TTGAACATCACACCAATAATCTCAT 452
Query 1575 CAAAG-ATCTTCTACCTCCTGGATCCGTTACAAGCGAAACCTTGTGGATTTATGGAAACG 1633
| ||| ||||||| ||| ||||||||| |||||| |||| |||||| | |||||
Sbjct 453 C-AAGAATCTTCTTCCTGATGGATCCGTGACAAGCCTAACCGACAAGATTTACGCAAACG 511
Query 1634 CATTGTACTTCAAAGGAGCCTGGGAAGACA-AATTCT-ATAAGTCAATG-ACGAA-ACAC 1689
||||||| ||||| |||| || |||||| | ||| | | |||| | || || || | ||
Sbjct 512 CATTGTATTTCAAGGGAG-CTTGGAAGAGACCATT-TGAAAAGT-ACTGTAC-AAGAGAC 567
Query 1690 A-A-ACCTTTCTACCTTGTCAATGGCA-AACAAGTAC-ATGTGCCATTCATGCA-AAGCT 1744
| | | | ||| ||||||||||||||| || ||| | ||| ||||||||| | ||||
Sbjct 568 AGAGA-C-TTCCACCTTGTCAATGGCACTAC-AGT-CTCTGTACCATTCATG-ACCAGCT 622
Query 1745 CA-CA-AAGTCAATATGTTAAG-GCTTACGATGGTTTCAAGGTCCTTAGACAACCATACC 1801
| | || ||||| | |||| ||||| || |||||||||||||| || | || ||||
Sbjct 623 -ATGAGAA-CCAATACG-TAAGAGCTTATGACGGTTTCAAGGTCCTCAGGCTCCCTTACC 679
Query 1802 GACAAGGC-GTTAATGATAC-AAGTCGCCAATTCTCAATGTGTACCTATCTCCCGGACGA 1859
||| |||| | ||||||| || ||| |||||||||||| | |||||| |||||| |
Sbjct 680 GACGAGGCAG-CGATGATACTAA-TCGTAAATTCTCAATGTATTTCTATCTTCCGGACAA 737
Query 1860 GAAAGATGGATTGGATAATCTTGTGGAGAAAATGACATCTACT-GATGGATTCTTGGACA 1918
|||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |
Sbjct 738 GAAAGATGGATTGGATAATCTTGTGGAGAAAATGGTATCTACACG-TGGATTCTTGGATA 796
Query 1919 GTCACATTCCGAGTTGGAGAGTTGAAGTTG-GTGAATTCAGAATTCCAAAGTTTAAGATT 1977
|||||||||||| | |||| || | ||| | ||||| ||||||||||||||||||||
Sbjct 797 GTCACATTCCGACATACAGAGATGCACTTGAG-GAATTTAGAATTCCAAAGTTTAAGATC 855
Query 1978 GAATTCGGTTTTGAAGCTT-CAAGCGTTTTCAAT-GACTTTG--C-GC-TTGA-TGTATC 2030
|||||| ||||| | || ||||| |||| || || || | | || || | ||| |
Sbjct 856 GAATTCAGTTTTTCTG-TTACAAGCATTTTGGATCGA-TTGGGACTGCGTTCAATGT--C 911
Query 2031 ATTATACCAAAAAGCTATGAT-T-GAGATTGATGAAGAAGGTACTGAAGCTGCGGCTGCT 2088
| | ||||| |||||| || | | |||||||||||||||||| |||||||||||||||||
Sbjct 912 AATGTACCATAAAGCT-TG-TGTCGAGATTGATGAAGAAGGTGCTGAAGCTGCGGCTGCT 969
Query 2089 ACTGCTC-T-AGTTGGT---GCTTGTGG-CT-GCAGCCTTT-AT-AGGCCTCCTCCTCCC 2139
|||||| | || ||| | ||||| || | || || | || ||||||
Sbjct 970 ACTGCTGATGAG--GGTCAAGGTTGTGCTCTTG-AG--TTCGAGGAG-CCTCCTAAGAAG 1023
Query 2140 ATAGATTTTGTGGCAGATCATCCAttttttttCTTTATTAGAGAAGACAAAACCGGAACT 2199
|||||||||||||| |||||||||||| ||||||| ||| ||||||||||||| |||||
Sbjct 1024 ATAGATTTTGTGGCTGATCATCCATTTCTTTTCTTGATTCGAGAAGACAAAACTGGAACC 1083
Query 2200 GTTTTGTTCGCTGGTCAAATCTTCGATCCTTC 2231
|||||||| | | ||||||||| |||||||
Sbjct 1084 GTTTTGTT-G--G-TCAAATCTTTAATCCTTC 1111
> Ahg475018 jgi|Araly1|475018|fgenesh2_kg.2__148__AT1G63280.1
Length=329
Score = 272 bits (147), Expect = 7e-72
Identities = 272/330 (82%), Gaps = 18/330 (5%)
Strand=Plus/Plus
Query 1518 TGAAGAAGTGCGTGAG-GAGGTGAATTCTTGGGCATTACG-TCACACCAATGGTATCATC 1575
|||| |||||||| | ||| ||||| ||||| || || ||||||||||||| |||||
Sbjct 9 TGAACAAGTGCGT-CGTGAGCTGAATAAATGGGC-TTCCGATCACACCAATGGTCTCATC 66
Query 1576 AAAGATCTTCTACCTCCTGGATCCGTTACAAGCGAAACC-TTGTGGATTTATGGAAACGC 1634
| ||| ||||| |||||||||||||||| |||||||||| || || |||||||||||||
Sbjct 67 AGAGACCTTCTTCCTCCTGGATCCGTTAAAAGCGAAACCGTTCAGG-TTTATGGAAACGC 125
Query 1635 ATTGTACTTCAAAGGAGCCTGGGAAGACAAATTCT-ATAAGTCAATGACGAAACA-CAA- 1691
|||||||||||||||||| |||||| ||||||| | | ||||| | || ||| | |||
Sbjct 126 ATTGTACTTCAAAGGAGCATGGGAAAACAAATT-TGACAAGTCTTTAACCAAA-ATCAAC 183
Query 1692 ACCTTTCTACCTTGTCAATGGCAAACAAGTACATGTGCCATTCATGCA-AAGCTCACAAA 1750
| |||| | || || |||||||||||||||||||||| |||||| | ||||| | |||
Sbjct 184 AAGTTTC-ATCTACTCGATGGCAAACAAGTACATGTGCCTTTCATG-AGAAGCT-ATAAA 240
Query 1751 -GTCAATATGTTAAGGCTTACGATGGTTTCAAGGTCCTTAGACAACCATACCGACAAGGC 1809
|||||||| | ||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 241 AGTCAATATATCAAGGCTTACGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGC 300
Query 1810 GTTAATGATAC-AAGTCGCCAATTCTCAAT 1838
| ||||||| || || ||||||||||
Sbjct 301 CATGATGATACCAAA-CGAAAATTCTCAAT 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84369892675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5