BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64040.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474951 jgi|Araly1|474951|fgenesh2_kg.2__81__AT1G64040.1 2085 0.0
> Ahg474951 jgi|Araly1|474951|fgenesh2_kg.2__81__AT1G64040.1
Length=1496
Score = 2085 bits (1129), Expect = 0.0
Identities = 1329/1418 (94%), Gaps = 44/1418 (3%)
Strand=Plus/Plus
Query 1 ACGAGCCGCACGTGTGCTTTCCTTTTTTCTCCTTCCCCGTTCTCTAGCCGATTCTCTCTG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ACGAGCCGCACGTGTGCTTTCCTTTTCTCTCCTTCCCCGTTCTCTAGCCGATTCTCTCTG 60
Query 61 TCTAGGGCTCCTCCGtcttcttcttctcataccttcacataccacaaaacctctcttctc 120
||||||||||||||| ||||||||| |||||| ||| ||||| ||| | ||
Sbjct 61 TCTAGGGCTCCTCCG---TCTTCTTCT--TACCTTAACAAACCAC-AAA-----C--CT- 106
Query 121 tctctattgattctctACGAAGAGGAAAGTGATTTTGAACCATCTTGATCGGAAACGGCG 180
|||| ||||||||||||||||| |||||| ||||||| |||||||||| ||||||
Sbjct 107 TCTC------TTCTCTACGAAGAGGAAGGTGATTCTGAACCACCTTGATCGGAGACGGCG 160
Query 181 TTTCGA-AACTGGAGGTCGAAG-ACGaaaa-aaaCTCTTATCTCATCGCTCCGGTGTACC 237
||| | |||| ||||||| || || |||| ||||||||||||||||||||||||||| |
Sbjct 161 -TTCCATAACTAGAGGTCGGAGAAC-AAAATAAACTCTTATCTCATCGCTCCGGTGTATC 218
Query 238 GAATTCGA--GAGGTTTTTGTTAGGTTTCGTAGTGATTGATTGATTTTGATGGAAGATAG 295
|||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 219 GAATTCGAGGGGGGTTTTTGTTCGGTTTAGTAGTGATTGATTGATTTTGATGGAAGATAG 278
Query 296 TGTGGTGGATGATGTTATAAAGAGGTTACTAGGAGCGAAAAACGGGAAGACGACGAAGCA 355
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 279 TGTAGTGGATGATGTTATAAAGAGGTTACTGGGAGCGAAAAACGGGAAGACGACGAAGCA 338
Query 356 GGTTCAGTTGACGGAGGCTGAGATTAAACATCTTTGTTCTACCGCTAAGCAGATCTTTCT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GGTTCAGTTGACGGAGGCTGAGATTAAACATCTTTGTTCTACCGCTAAGCAGATCTTTCT 398
Query 416 CACTCAACCTAATCTTCTTGAACTCGAGGCTCCTATTAAGATTTGTGGAGATACTCATGG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CACTCAACCTAATCTTCTTGAACTCGAGGCTCCTATTAAGATTTGTGGAGATACTCATGG 458
Query 476 TCAGTTCTCAGATCTTTTGAGATTGTTCGAGTATGGTGGCTACCCACCAGCTGCAAACTA 535
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 459 TCAGTTCTCAGATCTTTTGAGATTGTTCGAGTACGGTGGCTACCCACCAGCTGCAAACTA 518
Query 536 TTTGTTTCTTGGGGATTATGTAGATCGTGGAAAGCAGAGTGTAGAGACCATATGCCTTCT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTTGTTTCTTGGGGATTATGTAGATCGTGGAAAGCAGAGTGTAGAGACCATATGCCTTCT 578
Query 596 TCTTGCCTACAAGATCAAATACAAAGAGAATTTCTTTCTTCTACGTGGGAACCATGAGTG 655
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 579 CCTTGCTTACAAGATCAAATACAAAGAGAATTTCTTTCTTCTACGGGGGAACCATGAATG 638
Query 656 TGCTTCTATAAACCGTATATACGGATTCTATGACGAGTGCAAGAAGAGATATAGCGTTCG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TGCTTCTATAAACCGTATATACGGATTCTATGACGAGTGCAAGAAGAGATATAGCGTTCG 698
Query 716 AGTGTGGAAGATATTTACTGACTGCTTTAATTGTCTACCTGTTGCTGCTCTTATTGATGA 775
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 699 AGTCTGGAAGATATTTACTGACTGCTTTAATTGTCTCCCTGTTGCTGCTCTTATCGATGA 758
Query 776 AAAGATCCTCTGTATGCATGGTGGGCTATCGCCTGAGTTGAAGCACTTGGATGAGATCAG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 AAAGATCCTCTGTATGCATGGTGGGCTATCGCCTGAGTTGAAGCACTTGGATGAGATCAG 818
Query 836 GAACATTC-CTCGTCCTGCTGACATTCCTGATCATGGACTACTGTGTGATCTGTTGTGGT 894
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 819 GAACAT-CGCTCGTCCTGCTGACATTCCTGATCATGGACTACTGTGTGATCTCTTGTGGT 877
Query 895 CTGATCCTGACAAAGACATTGAAGGATGGGGAGAGAATGACAGGGGTGTCTCGTACACTT 954
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 878 CTGATCCTGACAAGGACATTGAAGGATGGGGAGAGAATGACAGGGGCGTCTCTTACACTT 937
Query 955 TTGGGGCTGATAAAGTCGAGGAGTTTCTTCAAACGCATGACCTTGACTTAATTTGTAGAG 1014
||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 938 TTGGGCCTGATAAAGTCGAGGAGTTTCTCCAAACACATGACCTTGACTTAATTTGCAGAG 997
Query 1015 CTCATCAGGTTGTGGAAGACGGGTATGAATTCTTTGCAAATAGACAGCTAGTAACGATAT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CTCATCAGGTTGTGGAAGACGGGTATGAATTCTTTGCAAATAGACAGCTAGTAACGATAT 1057
Query 1075 TCTCGGCCCCAAACTACTGCGGAGAGTTTGATAACGCAGGAGCAATGATGAGTGTGGATG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TCTCGGCCCCAAACTACTGCGGAGAGTTTGATAACGCAGGAGCAATGATGAGTGTGGATG 1117
Query 1135 ATTCCTTGACGTGCTCATTTCAGATCCTTAAAGCATCTGAGAAGAAAGGAAACTTCGGGT 1194
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1118 ATTCATTGACGTGCTCATTTCAGATCCTTAAAGCATCTGAGAAGAAAGGAAATTTCGGAT 1177
Query 1195 TTGGCAAAAATGCAGGAAGGCGAGGAACCCCGCCTCGCAAGGG-T----GG--TGGAAAA 1247
||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 1178 TTGGCAAAAATGCAGGAAGGCGAGGAACCCCGCCTCGCAAGTTCTATTAGGGGTGGAAAA 1237
Query 1248 GGCTGAAGACAAATCCCATAAACTCTGTTTTGTGTATTCCATGTTTCTTGGTTCAAGACA 1307
||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1238 GGCTGAAGAGAAATCCAATAAACTCTGCTTTGTGTGTTCCATGTTTCTTGGTTCAAGACA 1297
Query 1308 CTTGCTTGATCAGCTGAACTTATCAAACTGtcttcttcttcttcttcCTCTGCTCTGGAT 1367
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1298 CTTGCTTGATCAGCTGAACTTATCAAACTGTCTTCTTCTTCTTCT------GCTCTGGAT 1351
Query 1368 CACTTTGGCAAGGGGTACTTCTGTCTT-TTCCCT-TGA 1403
|||| | ||||||||||||||||| || ||| || |||
Sbjct 1352 CACTCTAGCAAGGGGTACTTCTGTATTATTCTCTGTGA 1389
Score = 198 bits (107), Expect = 9e-50
Identities = 118/123 (96%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1448 TATTATTCTCTGTGAGATACACTTTATGTCG-TTTTTTGTTAAAACATTTAAATGAAAAT 1506
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1375 TATTATTCTCTGTGAGATACACTTTATGTCGTTTTTTTGTTAAAACATTTATATGAAAAT 1434
Query 1507 CATAATGTTCCTCGTCACTTGGaaaaaaaCGGCACGGTGTTTCGTTTGGAAACTTAACAA 1566
| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1435 CCTAATGTTCCTCGTCACTTGGAAAAAA-CGGCACGGTGTTTTGTTTGGAAACTTAACAA 1493
Query 1567 TGA 1569
|||
Sbjct 1494 TGA 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5