BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64050.1
Length=2545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474950 jgi|Araly1|474950|fgenesh2_kg.2__80__AT1G64050.1 3591 0.0
> Ahg474950 jgi|Araly1|474950|fgenesh2_kg.2__80__AT1G64050.1
Length=2449
Score = 3591 bits (1944), Expect = 0.0
Identities = 2331/2506 (93%), Gaps = 74/2506 (3%)
Strand=Plus/Plus
Query 53 aaaaaaaaCCAAATCAATCTCACTCTTGTAGCTCACTATTCTCCAGAAATTTCTAAGATT 112
||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 4 AAAAAAACCCAAATCAATCTCACTCTTTTAGCTCACTTTTCTCCAGAAATTTCTAAG--- 60
Query 113 TAGCTTTCTCTAAAGCTCGATCGAACTATCTGGGTTTTGGTTTAAAAGGAGATGATGAGT 172
| | | | || | | ||||||||||| |||| ||||||||||||||||||||
Sbjct 61 -A----T-T-T--AG--C--T--AACTATCTGGG-TTTGCTTTAAAAGGAGATGATGAGT 104
Query 173 TCGTATCGCAGCTTACACGGCTGCGATGTTTTCGATTTGGGTTTGTGATGGATGGTTTGA 232
|||||||||||||||||| | || || ||||||||||||||||||||||||||||
Sbjct 105 TCGTATCGCAGCTTACAC-G--GC--TG----CGATTTGGGTTTGTGATGGATGGTTTGA 155
Query 233 AGATTTCTTGTCCTGTGGATGTTTCGTTGCCGGCTAAGCTTATGGGATCTGAAGGGTGTG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 AGATTTCTTGTCCTGTGGATGTTTCGTTGCCGGCTAAGCTTATGGGATCTGAAGGGTGTG 215
Query 293 GTGGTGGAGTTAGGGTTTCGTCGAATAAAGCAGATAACAACTGTGACAAGGCTCGTGTCT 352
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 216 GTGGTGGAGTTAGGGTTTCGTCCAATAAAGCAGATAACAACTGTGAGAAAGCTCGTGTCT 275
Query 353 CGATTGGTGTTAATTCTTCAATTGAGCGTTGTAGTAGTGCTTCAATCAACAAGAAAGGAG 412
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 276 CGATTGGTGTTAATTCTTCAATTGAGCG-T-T-GTAGTGCTTCAATCAACAAGAAAGGAG 332
Query 413 CAGGAAGTAGCAGTGGAGCGTCTGATTCATCGTTATGGCGCAAGTTAATGCATTCACATG 472
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 333 CAGGAAGTAGCAGTGGGGGGTCGGATTCATCGTTATGGCGCAAGTTAATGCATTCACACG 392
Query 473 ACTTTGTACATGATAGGCTTACTAAACTTCGGGTTGACAATTCATCTGAGCCTCAAAATG 532
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 393 ACTTTGTACATGATAGGCTTACTAAACTTCGGGTTGATAATTCATCGGAGCCTCAAAATG 452
Query 533 GTTATTCACCGATTGCTAGTCCAGAAAGTGCGGAGTCTCCTAGGAAAAGAGGAAAACTTT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 453 GTTATTCACCGATTGCTAGTCCAGAAAGTGCGGAGTCTCCTAGGAAAAGAGGAAAGCTTT 512
Query 593 CTAGAAGTAGTAGTGGTAATGGCACTCCGAGAAGGACGAAATTGATCCTTTTAGATGAAA 652
| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 513 CGAGAAGTAGTA---GTAATGGGACTCCGAGAAGGACGAAATTGATCCTTTTAGATGATA 569
Query 653 CGGTGAGGACACAGAGAGATAACGACACCAAGGAGATATGTGGACAAGGATCTACTAGTT 712
||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 570 CGGTGAGCATACCGAGAGATAACGACACTAAGGAGATATGTGGACAAGGATCTACTAGCT 629
Query 713 GCTTAGATAAACCGTTTGTGGTGAAGCAACGGAGCAGTTATAACGGCAAGCGAGGTGATA 772
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 630 GCTTAGATAAACCGTTTGTGGTGAAGCAACGGACCAGTTGTAACGGCAAGCGAGGTGATA 689
Query 773 AGAGGATTTCCAAAGTTCCGGTGAGAACTTTATCAACCATCAATTCAGCGACTGGCGAGA 832
||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||
Sbjct 690 AGAGGATTTCCAAAGTTCCCGTGAGAACTTTTTCAACCATCACTTCAGCCACTGGCGAGA 749
Query 833 ATGCATTTTTCGGTGCCTATGGCCTGAAGCCTGCAATAAATGATGTTACCAAACTCGTTG 892
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 750 ATGCATTTTTCGGTGCTTATGGTCTGAAGCCTGCAATAAATGATGTTACCAAACTCGTTG 809
Query 893 AAGATTTTTCATTGAAAAGTCTTCTTGAAGGCTCTTATGAGTGTCCTTCTTTGGGCAAAG 952
||||||| || ||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 810 AAGATTTGTCTTTGAAAAATCTTCTTGAAGGCTCTTATGAGTGTCCTTCTCTGGGCAAAG 869
Query 953 ACAAGATGAAGAAATCGGAGAATACTAACAACACTTTATTGAGTGTAGTCAAAAATGTTT 1012
||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 870 ACAAGATGAAGAAATTGGAGAATACTAACGACATTTTATTGAGTGTAGTCAAAAATGTTT 929
Query 1013 GGTCCATTCTACCAACAAAGAGGCCTGTTCAATCACAAAGCTCTACTGAATTAGACACTT 1072
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GGTCCATTGTACCAACAAAGAGGCCTGTTCAATCACAAAGCTCTACTGAATTAGACACTT 989
Query 1073 GTCTCAGCAGAACTCTGGGTTCACCGCCTAGCTCTATCTCTGCTACACTACCAAATAGTG 1132
||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||
Sbjct 990 GTCTCAGCAGAACTCTGGGTTCACCACCCAGCTCTATCTCTGCTACACTACTAAATGGTG 1049
Query 1133 AAAACATCGATAA-AGTAAATGCCCTGGATGGAGATCTATCGTCATCGTCCAAGGATCAT 1191
||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1050 AAAACATCGATAACA-CAAATGCCCTGGATGGAGATCTATCCTCATCTTCCAAGGATCAT 1108
Query 1192 TGCATCAACTCTGAAATTCCTTCCACTCCACTTAGTTTTCCATTATGCGACGCTGGCGAT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1109 TGCATCAACTCTGAAATTCCTTCCACTCCACTTAGTTTTCCATTATGCGACGCTGTAGAT 1168
Query 1252 GTATTGAAAAGATTAGGCCTTCCTCCGTCGAAAGATTTAGACTCTCTGCTCCAAGATGCA 1311
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1169 GTATTGAAACGATTAGGCCTTCCGCCGTCGAAAGATTTAGACTCTCTGCTCCAAGATGCA 1228
Query 1312 TCAAAACCTTCTCATAACTCTAAGAACAATTTGGACCAGCAGCGTTCAGCT----AA--A 1365
|||||||||||||| |||||||||| ||| ||||||||||||||||||||| || |
Sbjct 1229 TCAAAACCTTCTCAGAACTCTAAGATCAACTTGGACCAGCAGCGTTCAGCTAAACAACTA 1288
Query 1366 CCTCCTCATAGTGGATTGCCTCATTTCCCTTGGTCGCAGCCCTTTAATGGGAGCTCTAGA 1425
||||||| |||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 1289 CCTCCTCGTAGTGGATTGCCACATTTCCCTTGGTCGCAGGCCTTTAGTGGGAGCTCTAGA 1348
Query 1426 ACCAACTCAGAAGCAGCAAAGCTTGTGACCTGCAAGACACTTTGTCAAGGACGATGGCTA 1485
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1349 GCCAACTCAGAAGCAGCAAAGCTTGTAACCGGCAAGACACTTTGTCAAGGACGATGGCTA 1408
Query 1486 AGAATAGCCGACACTTCTATGAGTTCTCCAGAGGGTATAACCGATAATTTCGCAAATCTG 1545
||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1409 AGAATAGCCAACACTACTATGAGTTCTCCAGATGGTATAACCGATAATTTCGCAAATCTG 1468
Query 1546 GAATCACTCACTTTCAACCAAAACTTAGTCCCTCCACTACTGAAACAGACTATTACTGGA 1605
| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 1469 GGATCACTCACTTTCAACCAAAACTTAGTCCCTCCATTACTGAAGCAGACTATTGCTGGA 1528
Query 1606 GTTAAGACCTCTCAAACAAAATTCGCTAACACCATTTCATGCCAGTGCGCAGAAGCATCT 1665
|||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct 1529 ATTAAGACCTCTCAAACAAAATTCGCTAACATCATTTCGTGCCAGTGCACAGAAGCATCT 1588
Query 1666 GTTTCTACCCTTCAAAATTCTTTCTTTGTTCCCAAAGAACCAGAGGGATCCCCAGATGTT 1725
||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1589 GTTTCTACCCTTCAAAAAGCTTCCTTTGTTCCTAAAGAACCAGAGGGATCCCCAGATGTT 1648
Query 1726 GAAGATGATGCTCTTTCATGTCCACAGCTTTTAGAAGCTGCACGAACGCTCTGTGACATT 1785
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1649 CAAGATGATGCTCTTTCCTGTCCACAGCTATTAGAAGCTGCTCGAACGCTCTGTGACATT 1708
Query 1786 GCAGTCCAGTCCGCAAACCACGA-CAACCCAAACGGAATCCTCAGATGGCCAAAGAAGCT 1844
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1709 GCAGTCCAGTCCGCAAACCAC-ATCAACCCAAACGGAATCCTCAGATGGCCAAAGAAGCT 1767
Query 1845 CTCTCAGAAATCCATGAAAGCCCGCAAATCCAAACTAATCGAAAAGCCTCTGGAAAGGCA 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 CTCTCAGAAATCCATGAAAGCCCGCAAATCCAAACTAATCGAAAAGCCTCTGGAAAGGCA 1827
Query 1905 CAGGACAACGGTTTCATCCATAGATCTTAACTCAAGCAACAACAACAATAACAAGAACCA 1964
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 CGGGACAACTGTTTCATCCTTAGATCTTAACTCAAGCAACAACAACAATAACAAGAACCA 1887
Query 1965 CGTGAGAAAAGATTCAGCAGCAGAGCATAATCACCACCATCATCATCATCAT---CCTAA 2021
||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 1888 CGTGAGAAAAGATTCAGCAGCAGAGCATAATCATCATCATCATCATCATCATTTTCCTAA 1947
Query 2022 GCCTTCAAAGAGACTGAAACTATCAACAATGGAGAACAAGAAGAGATCATTCCCGAGCTC 2081
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1948 GCCTTCAAAGAGACTGAAACTATCAACAATGGAGAACAAGAAAAGATCATTCCCAAGCTC 2007
Query 2082 ATCATC--CCC-AATAGAATCAGATAGAAAACATTCATCTTCAAGCAAGTTCAAGAATCA 2138
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 ATCATCATCCCCAATAGAATCAGATAGAAAACATTCATCTTCAAGCAAGTTCAAGAATCA 2067
Query 2139 CTCCCGTATGATGTTGCCGCCTCCACCACCAACGAGAACACTCCAAAAGTCATCCACATA 2198
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2068 CTCCCGTATGATGCTGCCGCCTCCACCACCAACGAGAACACTCCAAAAGTCATCCATGTA 2127
Query 2199 TCCTCAGAAAGCTCGGAAATTTCCATGAACCGGTTGAAAATAAGAGTGGTGGATCCATAT 2258
||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 2128 TCCTCAGAAAGCTCGGAAATTTCCATGAACCGGTTGAAAATAA-A---------CCA-AT 2176
Query 2259 AAACCAATCTTGATTACTCAAAAGAAACCGGTTTGGTTTTACAAGGGGACATAACGGCGT 2318
| | | | |||||||||| || ||||| |||||||||||| || |||| ||||||
Sbjct 2177 ---C---T-T-GTTTACTCAAAA-AA-CCGGTCTGGTTTTACAAGTGG-CATATCGGCGT 2225
Query 2319 CGTAGGAGTCGTCTGTAAATACGAATGGTGTCACGGTGTAAGGTAAGTTCTTCTCTATGT 2378
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2226 CGTAGGAGTCGTATGTAAATATGAATGGTGTCACGGTGTAAGGTAAGTTCTTCTCTATGT 2285
Query 2379 GGACAGTGTTTAGGTGCAGAAGACTATATATATTGTATTGCCTTCAATGTTGTAACAttt 2438
||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 2286 GGACAGTGTTTAGGTGCAGAAGACTATATATATAGTGTTGCCTTCAATGTTGTATCATTA 2345
Query 2439 ttttttttCAGTTGTAGTTGTAGCCACACAGTTCTTTTTAAGGTCTGTTGTGTTTAAAGA 2498
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2346 TTTTTT--CAGTTGTAGTTGTAGCCACACAGTTCTTTTTAAGGTCTGTTGTGTTTGAAGA 2403
Query 2499 TTTTTAATTCTACGAGGTCAATGATAAAATTCTCAACTTGAGTGTC 2544
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2404 TTTTTAATTCTACGAGGTCAATGATAAAAATCTCAACTTCAGTGTC 2449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95949327155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5