BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64065.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474948 jgi|Araly1|474948|fgenesh2_kg.2__78__AT1G64065.1 1275 0.0
> Ahg474948 jgi|Araly1|474948|fgenesh2_kg.2__78__AT1G64065.1
Length=918
Score = 1275 bits (690), Expect = 0.0
Identities = 858/935 (92%), Gaps = 27/935 (3%)
Strand=Plus/Plus
Query 9 CTCGCTTTTataaacgaataaaaataaaatcaaaattaacacacaaaaaagaataaaata 68
||||||||||||||||||| |||| |||||||||||||||||||||||| || |||| |
Sbjct 1 CTCGCTTTTATAAACGAAT-AAAA-AAAATCAAAATTAACACACAAAAAGGAGTAAACTC 58
Query 69 attaaaag-ac----aaaaatCAAGCCCTCCGGA-AAAGACTTATTAAG-GATA-AAAAA 120
|||||| | || |||||||||||||||| || |||||||| ||||| | | |||||
Sbjct 59 ATTAAAGGAACAAAAAAAAATCAAGCCCTCC-GAGAAAGACTT-TTAAGAAAAAGAAAAA 116
Query 121 CACCGCGTAAGACTCTAACTTAACACGATCGT-GCCACGTGTCCTCCAGAAATCCCTCTT 179
||||||||||| |||||||| ||||||||| | ||||||||||||||| |||||||||||
Sbjct 117 CACCGCGTAAGGCTCTAACTCAACACGATC-TCGCCACGTGTCCTCCACAAATCCCTCTT 175
Query 180 TTAACCGCCAAAAAAGAAACCACCCACTCTTCCATTAACATTAACTTTCCTCAtcttctt 239
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 176 TTAACCGCCAAAAAAGAAACCACCCACTCTTCCATTAACATTAAC--TCCTC-TCTTCCT 232
Query 240 cttcttcttcCTCTGATCTAAACAACAAAACAAAAAATGGTGGACGAAGATCGGATAACA 299
|| ||||||||||||| | | | ||||||||||||||||| ||||||||||||||
Sbjct 233 CTCCTTCTTCCTCTGA--T---C--C-AAACAAAAAATGGTGGAAGAAGATCGGATAACG 284
Query 300 CTAGCTCCTACCGAGATCTATGGCAGGAGTGATGAAGAACAGAGCGGACCAAGAATCTGG 359
||||||| || | |||||||||| |||| ||||||||||||| || |||||||||||||
Sbjct 285 TTAGCTCCGACGGCGATCTATGGCCGGAGCGATGAAGAACAGAACGAACCAAGAATCTGG 344
Query 360 CGTCGGAAAACAGAGGAACCACCAGGGAAATGTCTAGTCTATTCCTTAACAATAATCGTC 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 345 CGTCGGAAAACAGAGGAACCTCCAGGGAAATGTCTAGTCTATTCCTTAACAATAATCGTC 404
Query 420 ATCATCTTCGCACTTTGTCTCATCCTATCTTCAATCTTTCTCCGTATCTCAAAACCAGAG 479
|||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 405 ATCATCTTCGCACTTTGTCTCATCCTCTCTTCAATCTTTCTACGGATTTCAAAACCAGAG 464
Query 480 ATCGAAACAAGATCAATATCGACTCGAGATCTACGATCGGGAGGTAATTCAACAAACCCT 539
|| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 465 ATTGAAACAAGATCAATATCCACTCGAGATCTTCGATTTGGAGGTAATTCAACAAACCCT 524
Query 540 TACTTCAACGCCACGCTAGTAAGTGATATCTCGATCAGAAACTCGAATTTTGGCGCGTTT 599
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 525 TACTTCAATGCCACGCTAGTAAGTGATATCTCGATCAGAAACTCCAATTTTGGCGCATTT 584
Query 600 GAATTTGAGGATAGTACGTTACGTGTTGTTTACGCTGATCATGGTGTTGTGGGAGAGACC 659
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GAGTTTGAGGATAGTTCGTTACGTGTTGTTTACGCTGATCATGGTGTTGTGGGAGAGACC 644
Query 660 AAGATTGAAGGG-AGAAGAGTGGAAGCTCATAAGACGGTTAGGATAACCGGTGTTGTAGT 718
|||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 645 AAGATTGA-GGGTAGAAGAGTTGAAGCTCATAAGACGGTTAGGATAACCGATGTTGTGGT 703
Query 719 TGAGATCGGTTCGTTTCGGTTATTGGATACTAAGGATTTGGATAAGGATTTGAGATTAGG 778
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 704 TGAGATCGGTTCGTTTCGGTTATTGAATAATAAGGATTTGGATTCGGATTTGAGATTAGG 763
Query 779 GTTTTTGGAGTTGAGAAGTGTTGCTGAGGTTAGAGGAAGGATTAAGGTTTTGGGAAGAAA 838
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GTTTTTGGAATTGAGAAGTGTTGCTGAGGTTAGAGGAAGGATTAAGGTTTTGGGAAGAAG 823
Query 839 AAGATGGAAAGTTAGTGTGATGAGTTGTACCATGAGACTAAATTTAACCGGTCGGTTTAT 898
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 824 GAGATGGAAAGTTAGTGTGATGAGTTGTACCATGAGACTTAATTTAACCGGTCGGTTTAT 883
Query 899 TCAAAATTTGTTATGTGAATAGTAGTGATTGATTG 933
||||||||||||||||| |||||||||| ||||||
Sbjct 884 TCAAAATTTGTTATGTGGATAGTAGTGAGTGATTG 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5