BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64080.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474947 jgi|Araly1|474947|fgenesh2_kg.2__77__AT1G64080.1 2087 0.0
> Ahg474947 jgi|Araly1|474947|fgenesh2_kg.2__77__AT1G64080.1
Length=1635
Score = 2087 bits (1130), Expect = 0.0
Identities = 1466/1619 (91%), Gaps = 59/1619 (4%)
Strand=Plus/Plus
Query 2 TTTCATACCATTTTTATGAAAATGGAACtaaaagcaataaagaaca-t--ta-ta-t--a 54
|||||||||||||||||||||||| |||||||||||| |||||||| | || || | |
Sbjct 1 TTTCATACCATTTTTATGAAAATGCAACTAAAAGCAACAAAGAACATTAATATTATTACA 60
Query 55 --tatcaagaaaaaat-aa--agtaataatttttata-tatataGCTTTCACTCTTCTCT 108
|||| ||||||||| || | ||||||||| |||| ||||||||||||||||||||||
Sbjct 61 TTTATCTAGAAAAAATAAATTACTAATAATTTATATAGTATATAGCTTTCACTCTTCTCT 120
Query 109 TACAAGCACTGTTATTAACCCTTCTTTTTCATCTAAAAGGAGAGGAGACTTTGAAGAAGA 168
|||||||| | || |||||||||||||||||| || | ||||||||||||||||||
Sbjct 121 CACAAGCACCG-TA--AACCCTTCTTTTTCATCT--AA--A-AGGAGACTTTGAAGAAGA 172
Query 169 AAGAAAACATTCAAAGCT-AAAAAACGCAGCGTTTTAGGAAAAAAGAGGTAGAGAGTGAT 227
|||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 173 AAGAAAACATTCAAAGCTCTAAAAACGCAGCGTTTTAGGAAAAAAGAGTTTGAGAGTGAT 232
Query 228 TCTGGCTTTCCCAACAATGGAAGCTTTCAGTCTCCTTAACTACTGGAAAAACAGTGGTGG 287
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 233 TCTGGCTTTCCCAACAATGGATGCTTTCAGTCTCCTTAACTACTGGAAAAGCAGTGGTGG 292
Query 288 TGCTGTTACTTTCCTTCCTCACTCCTCCGAAtcttcttcttcttctcttTGCCGTTACTC 347
||||||||||||||||||||| ||||||| | | |||||||| | || ||||||||||||
Sbjct 293 TGCTGTTACTTTCCTTCCTCAATCCTCCG-A-C-TCTTCTTC-T-TC-TTGCCGTTACTC 346
Query 348 CGCCGGTGAATCCATCGGAACCACCACCATTGTCACCTCTGTTACCGAAACTGAGGACGA 407
|||||| ||||||| ||||||||||||||||||||| || ||||||| |||||| || ||
Sbjct 347 CGCCGGCGAATCCACCGGAACCACCACCATTGTCACTTCCGTTACCGGAACTGAAGATGA 406
Query 408 AGAAGCTGATGAAAACGACGACGAAGGACCGTTCTTCGACCTTGAGTTCGCTCTTCCAGC 467
|||||||||| | || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 407 AGAAGCTGATTACGACAACGACGAAGGACCCTTCTTCGACCTTGAGTTCGCTCTTCCAGC 466
Query 468 ---------C---GAAGAAGAAG---ACACAGACGGAGGAGTCGGAAGAGAGGGAGACTC 512
| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 467 TGAAGAAGACGAAGAAGAAGAAGAAAACACAGACGGAGGAGTCGGAAGAGAGGGAGATTC 526
Query 513 CGATTGTACGGACGGTGGTTGTGAGTTTAAATTCACTCTCTCGTCTTGTTCCGGAGGAGA 572
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 527 CGATTGTACGGACGGCGGTTGTGAGTTCAAATTCACTCTCTCGTCTTGTTCCGGTGGAGA 586
Query 573 AGATCGAGTAGATCCAGATTCACTCGATGATGTTTTCTTCAAGGAAACGATTGTTGAAGA 632
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 587 AGATCGAGTAGATCCAGATTCTCTTGATGATGTTTTCTTCAAGGAAACGATTGTTGAAGA 646
Query 633 GGTTGAACCACCGACTTCTTCAGAGCAGCAGACATGTTCTGTTAAAGCTCCCGCGGCGCA 692
||| ||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 647 GGTCGAACCACCGTCGTCTTCAGAGCAGCAGACTTGTTCCGTTAAAGCTCCGGCGGCGCA 706
Query 693 GTTATCGGCGTCAATTTTGAAAACCGCCACCAAGCTTCGTGTGTTCATGCTCGGAATGAA 752
|||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 707 GTTATCGGCGTCGATTTTGAAATCCGCCACTAAGCTTCGTGTGTTCATGCTCGGAATGAA 766
Query 753 GAAATCAAAGCTAATCCAAGCGAAATCAGAAGCTAATTTCGGATCTGAAGACCTCGATAA 812
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 767 GAAATCTAAGCTTATCCAAGCGAAATCAGAAGCTAATTTCGGATCTGAAGACCTCGAGAA 826
Query 813 GCAA-ACTCATCCTCCTCCGCCGTTATCACTTTCGCCGGAATCGCAACAGAAAAGTACGG 871
| || | || ||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 827 G-AATAATCCTCCTCTTCCGCCGTCGTCACTCTCGCCGGAATCGCAACAGAAAAGTACGG 885
Query 872 TGACAGTGAATTTAAAAGTTGAAGAAGTTCCGATAATTTCTCTATTCT-CAAGAGAAAAC 930
||||||| ||||||||||||||||| | ||||||||||||||| || | | |||||||||
Sbjct 886 TGACAGTTAATTTAAAAGTTGAAGAGGCTCCGATAATTTCTCTGTT-TACCAGAGAAAAC 944
Query 931 AGCTCGAAGAACTCAtcttcgtcttcttcttcatcttcttcttcgtcttcCTCATTAAAG 990
||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||| |
Sbjct 945 AGCTCGAAGAACTCATCTTCGTCGTCTTCTTCTTCATCTTCTTCGTCTTCCTCGTTAAGG 1004
Query 991 AAGCAAAACGGCAACGAATCTGTCGTTTCAGATGAGAAACGATTCGTGATGATGCAAAAG 1050
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1005 AAGCAAAACGGCAACGAATCTGTCGTTTCAGACGAGAAACGATTCGTGATGATGCAAAAG 1064
Query 1051 TACTTAAAGAAGGTAAAACCACTTTACATCAGAGTTTCACGTCGTTACGGCGAGAAATTA 1110
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1065 TACTTAAAGAAGGTAAAGCCACTTTACATCAGAGTTTCACGTCGTTACGGTGAGAAATTA 1124
Query 1111 CGACACTCCGGTCAACTAACAGCTCCATCGTCTGCGAGATCCACGGCGGAGAAAGCAGAT 1170
||||| |||||||||||||| ||||| || | ||||||||||||||||||||| | ||
Sbjct 1125 CGACATTCCGGTCAACTAACCGCTCCGTC--C-GCGAGATCCACGGCGGAGAAAACGGAA 1181
Query 1171 TCGCCGGTGGCTACGAAGACTAATAATAAACCGGGGAACA-A--CATCAACATTCCAGCT 1227
|| ||| ||| |||||||||| | ||||||||| |||| | ||||||||||||||||
Sbjct 1182 TCTCCGACGGCCACGAAGACTA-T--TAAACCGGGAAACATAAACATCAACATTCCAGCT 1238
Query 1228 GGTCTTAAAGTAGTGAGGAAACATCTCGGGAAAAGCAGATCGTCATCTTCAACAGCGACT 1287
||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||||
Sbjct 1239 GGTCTTAAAGTAGTGAGAAAACACCTCGGAAAAAGCAGATCGTCGTCTTCAACGGCGACA 1298
Query 1288 ACACCGTCGTCTACTACGGCGACTGTAACGACTCAGTCTGAGTCAAGAAGACGCGACGAC 1347
||||| |||||||| |||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1299 ACACCATCGTCTACGGCGGCCACTGTTACGACTCCGTCTGAGTCAAGAAGACGCGACGAC 1358
Query 1348 TCGCTTCTTCAACAACAAGATAGTATTCAAAGTGCCATTTTACACTGCAAAAGATCTTTC 1407
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1359 TCACTTCTTCAACAACAAGATAGTATTCAAAGCGCCATTTTACACTGCAAAAGATCTTTT 1418
Query 1408 AATTCCTCTAGAGATAAAGATCCGTCGGTGTTACCAAGATCGGTGAGTGAACCTTCCTCT 1467
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1419 AATTCCTCTAGAGATAAAGATTCGTCGGTGTTACCAAGATCGGTGAGTGAACCTTCCTCT 1478
Query 1468 TACGAGAAATGAGATAATATCGTAATCtttttttttATTAGTTTCAAGAGAATCTCAACG 1527
||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1479 TACGAAAAATAAGATAATATCGTAATCTTTTTTTT-ATTAGTTTCAAGAGAATCTCAACG 1537
Query 1528 GTATTGATTTTCTCGCATTAACAACTTCATAATAATTATGGGTT-TTGTAAATATTTTT 1585
|| || |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1538 GTTTTCATTTTCTCACATTAACAACTT-ATAATAATTATGGGTTATTGTAAATATTTTT 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5