BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64110.2
Length=2886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474944 jgi|Araly1|474944|fgenesh2_kg.2__74__AT1G64110.1 4405 0.0
Ahg495353 jgi|Araly1|495353|fgenesh2_kg.8__1169__AT5G52882.1 606 2e-172
> Ahg474944 jgi|Araly1|474944|fgenesh2_kg.2__74__AT1G64110.1
Length=2845
Score = 4405 bits (2385), Expect = 0.0
Identities = 2728/2886 (95%), Gaps = 53/2886 (2%)
Strand=Plus/Plus
Query 6 AGCGATCaaaaaaaTCTTCAT-TAAAAGAACCCTAAATCTCTCATATCCGCCGCCGTCTT 64
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1 AGCGATCAAAAAAATCTTCATAAAAAAAAACCCTAAATCTCTCATATCCGCCGCCGTCTT 60
Query 65 TGCCTCATTTTCAACACCGGTGATGACGTGTAAATAGATCTGGTTTTCACGGTTCTCACT 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TGCCTCATTTTCAACACCGGTGATGACGTGTAAATAGATCTGTTTTTCACGGTTCTCACT 120
Query 125 ACTCTCTGTGATTTTTCAGACTATTGAATCGTTAGGACCAAAACAAGTACAAAGAAACTG 184
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 121 ACTCTCTGTGATTTTTCAGACTATTGAATCGTTAGGACCAAAATAAG-AGAAAGAAACTG 179
Query 185 CAG-AAG-AAAAGATTTGAGAGAGATATCTTACGAAACAAGATCAAATGGACAGCAAACA 242
||| ||| |||| |||||||||||||||||||| | || | | | ||||||||
Sbjct 180 CAGAAAGAAAAAAATTTGAGAGAGATATCTTAC---A-AA-A-C------A-AGCAAACA 226
Query 243 GATGTTGTTGTCGGCGCTTGGCGTCGGAGTTGGAGTAGGTGTGGGTTTAGGCTTGGCTTC 302
||||||||| |||||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 227 GATGTTGTTATCGGCGCTCGGCGTCGGTGTTGGAGTCGGTGTGGGTTTGGGCTTGGCTTC 286
Query 303 TGGTCAAGCCGTCGGAAAATGGGCCGGCGGGAACTCGTCGTCAAATAACGCCGTCACGGC 362
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 287 GGGTCAAGCCGTCGGAAAATGGGCCGGCGGGAACTCATCGTCAAGTAACGCCGTCACGGC 346
Query 363 GGATAAGATGGAGAAGGAGATACTCCGTCAAGTTGTTGACGGCAGAGAGAGTAAAATTAC 422
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 347 GGATAAGATGGAGAAGGAGATACTTCGTCAAGTTGTTGACGGCAGAGAGAGTAAAATTAC 406
Query 423 TTTCGATGAGTTTCCTTATTATCTCAGTGAACAAACACGAGTGCTTCTAACAAGTGCAGC 482
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TTTCGACGAGTTTCCTTATTATCTCAGTGAACAAACACGAGTGCTTCTAACAAGTGCAGC 466
Query 483 TTATGTCCATTTGAAGCACTTCGATGCTTCAAAATATACGAGAAACTTGTCTCCAGCTAG 542
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 467 TTATGTCCATTTGAAGCACTTTGATGCTTCGAAATATACCAGAAACTTGTCTCCAGCTAG 526
Query 543 CCGAGCCATTCTCTTGTCCGGCCCTGCCGAGCTTTACCAACAAATGCTAGCCAAAGCCCT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CCGAGCCATTCTCTTGTCCGGCCCTGCCGAGCTTTACCAACAAATGCTAGCCAAAGCCCT 586
Query 603 AGCTCATTTCTTCGATGCCAAGTTACTTCTTCTAGACGTCAACGATTTTGCACTCAAGAT 662
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AGCTCATTTCTTCGACGCCAAGTTACTTCTTCTAGACGTCAACGATTTTGCACTCAAGAT 646
Query 663 ACAGAGCAAATACGGCAGTGGAAATACAGAATCATCGTCATTCAAGAGATCTCCCTCAGA 722
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 647 ACAGAGCAAATATGGCAGTGGAAATACAGAATCGTCTTCATTCAAGAGATCTCCCTCAGA 706
Query 723 ATCTGCTTTAGAGCAACTATCAGGACTGTTTAGTTCCTTCTCCATCCTTCCTCAGAGAGA 782
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ATCTGCTTTAGAGAAACTATCAGGACTGTTTAGTTCCTTCTCCATCCTTCCTCAGAGAGA 766
Query 783 AGAGTCAAAAGCTGGTGGTACCTTGAGGAGGCAAAGCAGTGGTGTGGATATCAAATCAAG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AGAGTCAAAAGCTGGTGGTACCTTGAGGAGGCAAAGCAGTGGTGTGGATATCAAATCAAG 826
Query 843 CTCAATGGAAGGCTCTAGTAATCCTCCAAAGCTTCGTCGAAACTCTTCAGCAGCAGCTAA 902
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TTCAATGGAAGGCTCTAGTAATCCTCCAAAGCTTCGTCGAAACTCTTCAGCAGCAGCTAA 886
Query 903 TATTAGCAACCTTGCATCTTCCTCAAATCAAGTTTCAGCGCCTTTGAAACGAAGTAGCAG 962
||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 887 TATTAGCAACCTTGCTTCTTCATCAAATCAAGTTTCAGCGCCTTTGAAGCGTAGTAGCAG 946
Query 963 TTGGTCATTCGATGAAAAGCTTCTCGTCCAATCTTTATATAAGGTCTTGGCCTATGTCTC 1022
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 947 TTGGTCATTCGATGAAAAGCTTCTCATCCAATCTTTGTATAAGGTCTTGGCCTATGTCTC 1006
Query 1023 CAAGGCGAATCCGATTGTGTTATATCTTCGAGACGTCGAGAACTTTCTGTTCCGCTCACA 1082
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1007 CAAGGCGAATCCGATTGTGTTATATCTTCGAGACGTTGAGAACTTTCTGTTCCGCTCACA 1066
Query 1083 GAGAACTTACAACTTGTTCCAGAAGCTTCTCCAGAAACTCAGTGGACCGGTCCTCATTCT 1142
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1067 GAGAACTTACAACTTGTTCCAAAAGCTTCTCCAGAAGCTCAGTGGACCGGTCCTCATTCT 1126
Query 1143 CGGTTCAAGAATTGTGGACTTGTCAAGCGAAGACGCTCAAGAAATTGATGAGAAGCTCTC 1202
|||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1127 CGGTTCAAGAATCGTAGACTTGTCGAGTGAAGACGCTCAAGAAATTGATGAGAAGCTCTC 1186
Query 1203 TGCTGTTTTCCCTTATAATATCGACATAAGACCTCCTGAGGATGAGACTCATCTAGTGAG 1262
|||||||||||| || |||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 1187 TGCTGTTTTCCCGTACAATATCGACATACGACCGCCTGAGGATGAGACCCATCTAGTGAG 1246
Query 1263 CTGGAAATCGCAGCTTGAACGCGACATGAACATGATCCAAACTCAGGACAATAGGAACCA 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 CTGGAAATCGCAGCTTGAACGCGACATGAACATGATCCAAACTCAGGACAATAGGAACCA 1306
Query 1323 TATCATGGAAGTTTTGTCGGAGAATGATCTTATATGCGATGACCTTGAATCCATCTCTTT 1382
||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1307 TATCATGGAAGTTCTATCGGAGAATGATCTTATATGCGATGACCTCGAATCGATCTCTTT 1366
Query 1383 TGAGGACACGAAGGTTTTAAGCAATTACATTGAAGAGATCGTTGTCTCTGCTCTTTCCTA 1442
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1367 TGAGGACACAAAGGTTTTAAGCAATTACATTGAAGAGATCGTTGTCTCTGCTCTTTCATA 1426
Query 1443 TCATCTGATGAACAACAAAGATCCTGAGTACAGAAACGGAAAACTGGTGATATCTTCTAT 1502
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TCATCTAATGAACAACAAAGATCCTGAGTACAGAAACGGAAAACTGGTGATATCTTCTAC 1486
Query 1503 AAGTTTGTCGCATGGATTCAGTCTCTTCAGAGAAGGCAAAGCTGGCGGTCGTGAGAAGCT 1562
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1487 AAGTTTATCGCATGGATTCAGTCTCTTCAGAGAAGGCAAAGCGGGCGGTCGCGAGAAGCT 1546
Query 1563 GAAGCAAAAAACTAAGGAGGAATCATCCAAGGAAGTAAAAGCTGAAT---C-----A-AT 1613
|||||||||||||||||| ||| |||||||||| ||||||||||| | | ||
Sbjct 1547 GAAGCAAAAAACTAAGGAAGAAAAATCCAAGGAACAAAAAGCTGAATTAGCGGCTGATAT 1606
Query 1614 CAAGCCGGAGACAAAAACAGAGAGTGTCACCACCGTAAGCAGCAAGGAAGAACCAGAGAA 1673
||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1607 TAAGCCGGAGACGAAACCAGAGAGTGTCACGGCCGCAAGCAGCAAGGAAGAACCAGAGAA 1666
Query 1674 AGAAGCTAAAGCTGAGAAAGTTACCCCAAAAGCTCCGGAAGTTGCACCGGATAACGAGTT 1733
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1667 AGAAACTAAAGCTGAGAAAGTTGCCCCAAAAGCTCCGGAAGTTGCACCGGATAACGAGTT 1726
Query 1734 TGAGAAACGGATAAGACCGGAAGTAATCCCAGCAGAAGAAATTAACGTCACATTCAAAGA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TGAGAAACGGATAAGACCGGAAGTAATCCCAGCAGAAGAAATTAACGTCACATTCAAAGA 1786
Query 1794 CATTGGTGCACTTGACGAGATAAAAGAGTCACTACAAGAACTTGTAATGCTTCCTCTCCG 1853
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1787 CATTGGTGCACTTGACGACATAAAAGAGTCACTTCAAGAGCTTGTAATGCTTCCTCTCCG 1846
Query 1854 TAGGCCAGACCTCTTCACAGGAGGTCTCTTGAAGCCCTGCAGAGGAATCTTACTCTTCGG 1913
||| |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1847 TAGACCAGACCTATTCACAGGAGGTCTCTTGAAGCCCTGCAGGGGAATCCTACTCTTCGG 1906
Query 1914 TCCACCGGGTACAGGTAAAACAATGCTAGCTAAAGCCATTGCCAAAGAGGCAGGAGCGAG 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TCCACCGGGTACAGGTAAAACAATGCTAGCTAAAGCCATTGCCAAAGAGGCAGGAGCGAG 1966
Query 1974 TTTCATAAACGTTTCGATGTCAACAATAACTTCGAAATGGTTTGGAGAAGACGAGAAGAA 2033
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1967 TTTTATAAACGTTTCCATGTCGACAATAACTTCGAAATGGTTTGGAGAAGACGAGAAGAA 2026
Query 2034 TGTTAGGGCTTTGTTTACTCTAGCTTCGAAGGTGTCACCAACCATAATATTTGTGGATGA 2093
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2027 TGTTAGGGCCTTGTTTACTCTAGCTTCGAAGGTGTCGCCAACCATTATATTTGTGGATGA 2086
Query 2094 AGTTGATAGTATGTTGGGACAGAGAACAAGAGTTGGAGAACATGAAGCTATGAGAAAGAT 2153
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2087 AGTTGATAGTATGTTGGGACAGAGAACAAGAGTAGGAGAACATGAAGCTATGAGAAAGAT 2146
Query 2154 CAAGAATGAGTTTATGAGTCATTGGGATGGGTTAATGACTAAACCTGGTGAACGTATCTT 2213
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2147 AAAGAATGAGTTTATGAGTCATTGGGATGGGTTAATGACTAAACCTGGTGAGCGTATCTT 2206
Query 2214 AGTCCTTGCTGCTACTAATCGGCCTTTCGATCTTGATGAAGCCATTATCAGACGATTCGA 2273
||||||||||||||| ||||||||||||||||| || || |||||||||||||| |||||
Sbjct 2207 AGTCCTTGCTGCTACGAATCGGCCTTTCGATCTAGACGAGGCCATTATCAGACGGTTCGA 2266
Query 2274 ACGAAGGATCATGGTGGGACTACCGGCTGTAGAGAACAGAGAAAAGATTCTAAGAACATT 2333
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2267 ACGAAGGATCATGGTGGGACTACCGGCTGTAGAGAACAGAGAAAAGATTCTAAGGACATT 2326
Query 2334 GTTGGCGAAGGAGAAAGTAGATGAAAACTTGGATTACAAGGAACTAGCAATGATGACAGA 2393
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2327 GTTAGCGAAAGAGAAAGTAGACGAAAACTTGGATTACAAGGAACTAGCAATGATGACAGA 2386
Query 2394 AGGATACACAGGAAGTGATCTTAAGAATCTGTGCACAACCGCTGCGTATAGGCCGGTgag 2453
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2387 AGGATACACAGGAAGTGATCTCAAGAATCTGTGCACAACCGCTGCGTATAGGCCGGTGAG 2446
Query 2454 agaacttatacagcaagagaggatcaaagacacagagaagaagaagcagagagagcctac 2513
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2447 AGAACTTATACAGCAAGAGAGGATCAAAGACACAGAGAAGAAGAAGCAGAGAGAGACTAC 2506
Query 2514 aaaagcaggtgaagaagatgaaggaaaagaagagagagTTATAACACTTCGTCCGTTGAA 2573
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2507 AAAAGCGGGTGAAGAAGATGAAGGGAAAGAAGAGAGAGTTATAACACTTCGTCCGTTGAA 2566
Query 2574 CAGACAAGACTTTAAAGAAGCCAAGAATCAGGTGGCGGCGAGTTTTGCGGCTGAGGGAGC 2633
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 2567 CAGACAAGACTTTAAAGAAGCCAAGAACCAGGTGGCGGCGAGTTTTGCAGCGGAGGGAGC 2626
Query 2634 GGGAATGGGAGAGTTGAAGCAGTGGAATGAATTGTATGGAGAAGGAGGATCGAGGAAGAA 2693
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2627 GGGAATGGGAGAGTTGAAGCAGTGGAATGAGTTGTATGGAGAAGGAGGATCGAGGAAGAA 2686
Query 2694 AGAACAACTCACTTACTTCTTGTAATGATGATGATGAATCATGATGCTGGTAATGGATTA 2753
||||||||||||||||||||||||||||| ||||||| | | || | | || ||||
Sbjct 2687 AGAACAACTCACTTACTTCTTGTAATGATCATGATGA-TGA--AT-C----A-TG-ATTA 2736
Query 2754 TGAAATTTGGTAATGTAATAGTATGGTGAATTTTTGTTTCCATGGTTAATAAGAGAATAA 2813
|||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 2737 TGAAATTTGGTAATGTAATAGTATGGTGGATTTTT-TT-CCATGGTTAATAAGAGAATAA 2794
Query 2814 GAATATGATGATATTGCTAAAAGTTTGACCCGTATGTTTGGTCTGTCATTATGAAATCAT 2873
||||| | | | | || |||||||||||||||||| ||||||||||| |||
Sbjct 2795 GAATA--A--A----G-T-----TT-GACCCGTATGTTTGGTCTTTCATTATGAAAGCAT 2839
Query 2874 ACTATA 2879
||||||
Sbjct 2840 ACTATA 2845
> Ahg495353 jgi|Araly1|495353|fgenesh2_kg.8__1169__AT5G52882.1
Length=2948
Score = 606 bits (328), Expect = 2e-172
Identities = 823/1054 (78%), Gaps = 65/1054 (6%)
Strand=Plus/Plus
Query 1699 CCAAAAGCTCCGGAAGTTGCACCGGATAACGAGTTTGAGAAACGGATAAGACCGGAAGTA 1758
|||||||| || || |||| || ||||| ||||||||||| || |||||||| |||||
Sbjct 1692 CCAAAAGCACCTGAGGTTGTTCCTGATAATGAGTTTGAGAAGCGTATAAGACCAGAAGTT 1751
Query 1759 ATCCCAGCAGAA-GAAATTAACGTCACATTCAAAGACATTGGTGCACTTGACGAGATAAA 1817
|| |||||| || || ||| || ||||| ||| |||||| | || ||||| | |||
Sbjct 1752 ATACCAGCA-AATGAGATTGGTGTGACATTTGCAGATATTGGTTCTCTAGACGAAACAAA 1810
Query 1818 AGAGTCACTACAAGAACTTGTAATGCTTCCTCTCCGTAGGCCAGACCTC-TTCACAGGAG 1876
||| ||||| ||||||||||| |||||||| || || || || || ||| |||| ||| |
Sbjct 1811 AGATTCACTTCAAGAACTTGTTATGCTTCCACTTCGAAGACCGGATCTCTTTCA-AGGCG 1869
Query 1877 GTC-TCTTGAAGCCCTGCAGAGGAATCTTACTCTTCGGTCCACCGGGTACAGGTAAAACA 1935
||| || | || || || ||||||||| || | ||||||||||| ||||| || ||||||
Sbjct 1870 GTCTTC-TCAAACCATGTAGAGGAATCCTATTATTCGGTCCACCTGGTACTGGCAAAACA 1928
Query 1936 ATGCTAGCTAAAGCCATTGCCAAA-GAGGCAGGAGCGAGTTTCATAAACGTTTCGATGTC 1994
||||| || ||||| || | |||| || || ||||| |||||||| || || || |||||
Sbjct 1929 ATGCTTGCAAAAGCAATCG-CAAATGAAGCTGGAGCTAGTTTCATCAATGTCTCCATGTC 1987
Query 1995 AACAATAACTTCGAAATGGTTTGGAGAAGACGAGAAGAATGTTAGGGCTTTGTTTACTCT 2054
||||| ||||||||||||||||||||||||||||| || || || ||| |||||||| |
Sbjct 1988 TACAATCACTTCGAAATGGTTTGGAGAAGACGAGAAAAACGTGAGAGCTCTGTTTACTTT 2047
Query 2055 AGCTTCGAAGGTGTCACCAACCATAATATTTGTGGATGAAGTTGATAGTATGTTGGGACA 2114
||| | || || || ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 2048 AGCAGCTAAAGTATCTCCAACGATTATATTCGTGGATGAAGTTGATAGTATGTTGGGACA 2107
Query 2115 GAGAACAAGAGTTGGAGAACATGAAGCTATGAG-AAAGATCAAGAATGAGTTTATGA-GT 2172
|| ||||||||||||||||||||||||||||| ||| || |||||||||||||||| |
Sbjct 2108 AAGGACAAGAGTTGGAGAACATGAAGCTATGAGGAAA-ATTAAGAATGAGTTTATGACG- 2165
Query 2173 CATTGGGATGGGTTAATGACTAAACCTGGTGAACGTAT-CTTAGTCCTTGCTGCTACTAA 2231
|||||||||||| ||||||| ||||| |||||| | || || || ||||| || || ||
Sbjct 2166 CATTGGGATGGGCTAATGACGAAACCCGGTGAAAGGATTCTC-GTTCTTGCAGCGACAAA 2224
Query 2232 TCGG-CC-TTTCGATCTTGATGAAGCCATTATCAG-ACGATTCGAACGAAGGATCATGGT 2288
| | || ||| |||||||||||||| || || || | | || || ||||| || |||||
Sbjct 2225 -CAGACCGTTT-GATCTTGATGAAGCTATCATTAGGAGGTTT-GAGCGAAGAATAATGGT 2281
Query 2289 GGGACTACCGGCTG-TAGAGAACAGAGAAAAGATTCTA-AGAACATTGTTGGCGAAGGAG 2346
|||||| || | | | |||| |||||| ||||| || ||||| |||||| ||| |||
Sbjct 2282 GGGACTTCCTTC-GATTGAGAGCAGAGAGAAGAT-CTTGAGAACTTTGTTGTTGAAAGAG 2339
Query 2347 AAAGTAGATGAAAACTTGGATTACAAGGAACTAGCA-ATGATGACAGAAGGATACACAGG 2405
||| ||| ||| |||| ||| | | || || | | | |||||||||||| |||| ||
Sbjct 2340 AAAACAGA-GAAT-CTTG-ATTTCCATGAGCTTGGACA-GATGACAGAAGGCTACAGTGG 2395
Query 2406 AAGTGATCTTAAGAATCTG-TGCA-CAACCGCTGCGTATAGGCCGGTgagagaacttata 2463
||||||||| ||||| || |||| || | ||||||||||| ||||| ||||| || ||
Sbjct 2396 AAGTGATCTCAAGAA-CTTATGCATCA-CAGCTGCGTATAGACCGGTTAGAGAGCTGATT 2453
Query 2464 cagcaagagaggatc-aaaga-cac-agag-aagaaga-agcaga-g-ag-a---gccta 2512
||||| || || || ||||| || |||| ||||||| || ||| | || | | | |
Sbjct 2454 CAGCAGGAAAG-ATTGAAAGATCAGGAGAGGAAGAAGAGAGAAGAAGCAGGAAAAGGC-A 2511
Query 2513 caaaag--c-aggtgaagaagatgaaggaaaaga-----ag-agagagTTATAACACTTC 2563
|| ||| | | ||| |||| |||| | ||| || |||||||||| ||| ||
Sbjct 2512 CAGAAGAACCAAAAGAAAAAGAAGAAGCAGAAGCTTCTGAGGAGAGAGTTATTACA-TTG 2570
Query 2564 -GTCCGTTGAACA-GACAAGACTTTA-AAGAAGCCAAGAATCAGGTGGCGGCGAGTTTTG 2620
| || ||||||| | ||||| | | || |||| || || ||||| || ||||||||||
Sbjct 2571 AGACCTTTGAACATGG-AAGACATGAGAA-AAGCTAAAAACCAGGTAGCTGCGAGTTTTG 2628
Query 2621 CGGCTGAGGGAGCGGGAATGGGA-GAGTTGAAGCAGTGGAATGAATTGTATGGAGAAGGA 2679
| | || ||||| |||||| | ||| ||||||| |||||||| |||||||||||||||
Sbjct 2629 CATCAGAAGGAGCAGGAATGA-ATGAGCTGAAGCAATGGAATGATTTGTATGGAGAAGGA 2687
Query 2680 GGATCGAGGAAGAAAG-AACAACTCACTTACTTC 2712
|| || ||||| |||| |||| ||||||||||||
Sbjct 2688 GGCTCAAGGAA-AAAGGAACAGCTCACTTACTTC 2720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108938100700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5