BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G64130.1

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054           394    2e-109
  Ahg947559 jgi|Araly1|947559|scaffold_703788.1                       95.3    3e-19 


> Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054
Length=324

 Score =  394 bits (213),  Expect = 2e-109
 Identities = 262/285 (92%), Gaps = 6/285 (2%)
 Strand=Plus/Plus

Query  67   TGGCAACGAGAACACATGACCATTGAGTCAGTGGATCACGAAACGAGAAGCATGACGCAA  126
            ||||||||| | |||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct  43   TGGCAACGACACCACATGACCATTGAGTCAGTAGATCACGAAACGAAAAGCATGAGGCAA  102

Query  127  CGGTTTACCGTACCTGAATTCTTTGAAGGCTATAAGATGATTACATCAACTACAAAAGTT  186
            ||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct  103  CGGTTTACCTTCCCTGAATTCTTTGAAGGCTATAGGCTGATTACATCAACTACAAAAGTT  162

Query  187  AATGATTCCGC-CATTGGCTTGTATAGCCTCGTCGATATCAGTGTGGAGTACGATAAGAC  245
            || |||| ||| || ||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct  163  AACGATT-CGCACACTGGCTTGAATAGCCTCGTCGATATCAGCGTGGAGTACGATAAGAC  221

Query  246  TGGCCCTGAGATCAAAGACCTTGACCAAGTCCAATTCCTTGTG-GACTATATCAATGAGT  304
            ||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct  222  TGGCCCTGAGATCAAAGACCTTGACGAAGTCCAATTCCTTGTGAG-CTATATCAATGAGT  280

Query  305  TGGTT-CTTCGTACTGGTGGTCAGCTCCTACGACGTCTTAAGTAA  348
            ||||| || |||||||||||||||||||||  |||| ||||||||
Sbjct  281  TGGTTGCT-CGTACTGGTGGTCAGCTCCTAATACGTTTTAAGTAA  324


 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  1   ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG  37
           |||||||||||||||||||||||||||||||||||||
Sbjct  1   ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG  37


> Ahg947559 jgi|Araly1|947559|scaffold_703788.1
Length=205

 Score = 95.3 bits (51),  Expect = 3e-19
 Identities = 55/57 (96%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  1   ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCGTGG  57
           |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  21  ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCGTGG  77



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12362410836


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5