BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64160.1
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924529 jgi|Araly1|924529|scaffold_200090.1 891 0.0
> Ahg924529 jgi|Araly1|924529|scaffold_200090.1
Length=590
Score = 891 bits (482), Expect = 0.0
Identities = 552/586 (94%), Gaps = 4/586 (1%)
Strand=Plus/Plus
Query 39 ACACATATTTTCAATATGGTAGGCCAAATGAAATCGTTTCTCTTCTTATTCGTTTTCCTT 98
|||||| |||| |||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct 8 ACACAT-TTTT-AATATGGTCGGCCATATGAAATCAATTCTCTTCTTATTCATTTTCCTT 65
Query 99 GTTCTAACAAAAACCGTCATATCAGCTAGAAAACCATCCAAATCGCAACCAAAACCGTGC 158
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GTTCTATCAAAAACCGTCATATCAGCTAGAAAACCATCCAAATCGCAACCAAAACCGTGC 125
Query 159 AAAAACTTTGTCCTCTACTACCACGACATAATGTTCGGTGTCGACGACGTGCAAAACGCG 218
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 126 AAAAACTTTGTTCTCTACTACCACGACATAATGTTCGGCGTCGACGACGTCCAAAACGCG 185
Query 219 ACTTCTGCAGC-AGTTACCAACCCACCGGGCCTCGGGAATTTCAAATTCGGGAAACTCGT 277
||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 186 ACTTCTGCAGCCA-TTACCAACCCGCCGGGCCTCGGGAATTTCAAATTCGGAAAACTCGT 244
Query 278 TATCTTCGACGATCCTATGACCATAGACAAAAACTTTCAGTCCGAACCTGTGGCAAGAGC 337
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | ||
Sbjct 245 GATCTTCGACGATCCCATGACCATAGACAAAAACTTTCAATCCGAACCTGTAGCACGTGC 304
Query 338 TCAAGGGTTCTATTTCTACGACATGAAGAATGACTACAATGCATGGTTCGCGTACACACT 397
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 305 TCAAGGATTCTATTTCTACGACATGAAGAACGATTACAATGCATGGTTCGCGTACACACT 364
Query 398 TGTGTTCAACTCGACTCAACACAAAGGGACGTTGAACATAATGGGAGCAGATCTCATGAT 457
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 365 TGTGTTCAACTCTACTCAACACAAAGGGACGTTGAATATAATGGGAGCAGATCTTATGAT 424
Query 458 GGTGCAGAGTAGAGATTTGTCTGTTGTCGGAGGGACAGGTGATTTTTTCATGTCTCGAGG 517
|| | ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 425 GGAGAAGACTAGAGATTTGTCTGTGGTCGGAGGGACAGGCGATTTTTTCATGTCTCGAGG 484
Query 518 GATTGTTACGTTTGAGACCGATACCTTTGAAGGTGCTAAGTATTTTAGGGTCAAGATGGA 577
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GATTGTTACGTTTGAGACTGATACCTTTGAAGGTGCTAAGTATTTTAGGGTCAAGATGGA 544
Query 578 TATCAAACTCTATGAATGTTACTAAAAGAGACCATTAAATGGTTCC 623
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 545 TATCAAACTCTATGATTGTTACTAAAAGAGACCATTAAATGGTTCC 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30688948185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5