BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64170.1
Length=2436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315017 jgi|Araly1|315017|fgenesh1_pm.C_scaffold_2000050 3358 0.0
> Ahg315017 jgi|Araly1|315017|fgenesh1_pm.C_scaffold_2000050
Length=2511
Score = 3358 bits (1818), Expect = 0.0
Identities = 2090/2219 (94%), Gaps = 28/2219 (1%)
Strand=Plus/Plus
Query 229 CTTCTTGGCCCGTCGGCTCTCGGTAGAATCACGTCGTACAAGAATTCAATTTTCCCGGCG 288
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 310 CTTCTGGGTCCGTCGGCTCTCGGTAGAATCACGTCGTACAAGAATTCAATTTTTCCGGCG 369
Query 289 AGAAGTCTAACGGTGCTCGACACTCTAGCAAACCTCGGCCTCCTTCTCTTCCTTTTCCTC 348
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 370 AGAAGTCTAACGGTGCTCGACACTCTAGCAAACCTCGGCCTCCTTCTCTTCCTCTTCCTC 429
Query 349 GTCGGACTCGAGATCGATCTGACATCTCTCCGACGTACCGGCAAAAAAGCGATTTCCATC 408
|||||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||
Sbjct 430 GTCGGACTCGAGATCGATCTAACATCTCTCCGCCGCACCGGTAAAAAAGCTATTTCCATC 489
Query 409 GCCGCCGCCGGAATGCTTCTCCCCTTCGGTATGGGCATTGTCACCTCCTTCGCTTTCCCT 468
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 490 GCCGCCGCCGGAATGCTCCTCCCCTTCGGTATGGGCATCGTCACCTCCTTCGCTTTCCCT 549
Query 469 GAAGCTTCTTCTTCTGGCGACAATAGCAAAGTACTTCCGTTCATCATTTTCATGGGAGTC 528
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 550 GAAGCTTCTTCTTCCGGCGACAATAGCAAAGTAGTTCCGTTCATCATTTTCATGGGAGTC 609
Query 529 GCGCTCTCGATCACTGCTTTCGGAGTTTTGGCGAGAATACTCGCTGAATTAAAGCTACTC 588
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 610 GCGCTCTCGATCACTGCTTTCGGAGTTTTGGCTCGAATCCTCGCTGAATTAAAGCTTCTC 669
Query 589 ACAACCGATCTCGGCCGGATTTCAATGAACGCCGCCGCAATTAACGACGTCGCGGCTTGG 648
|| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 670 ACCACCGATCTCGGCCGTATTTCAATGTCCGCCGCCGCAATTAACGACGTCGCGGCTTGG 729
Query 649 GTTCTCCTAGCTCTCGCTGTATCTCTCTCCGGCGATAGGAATTCTCCGCTTGTTCCTCTC 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GTTCTCCTAGCTCTCGCTGTATCTCTCTCCGGCGATAGGAATTCTCCGCTTGTTCCTCTC 789
Query 709 TGGGTTCTGTTAAGTGGAATCGCGTTTGTGATCGCGTGTTTTTTAATCGTACCGCGAATT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TGGGTTCTGTTAAGTGGAATCGCGTTTGTGATCGCGTGTTTTTTAATCGTACCGCGAATT 849
Query 769 TTCAAATTCATCTCTCGGCGTTGCCCAGAAGGCGAACCCATAGGCGAAATGTACGTTTGC 828
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 850 TTCAAATTAATCGCTCGGCGTTGCCCAGAAGGCGAACCGATAGGCGAAATGTACGTTTGC 909
Query 829 GTCGCCCTTTGCGCGGTTCT-ACTCGCGGGTTTCGCGACAGACGCCATTGGGATTCACGC 887
||||| |||||| ||||||| | |||||||||||||||||||||| ||||| ||||||||
Sbjct 910 GTCGCTCTTTGCTCGGTTCTGA-TCGCGGGTTTCGCGACAGACGCGATTGGAATTCACGC 968
Query 888 GATTTTCGGTGCGTTTGTGATGGGCGTTTTGTTTCCCAAAGGACATTTCT-CAGACGCGA 946
|||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||
Sbjct 969 GATTTTCGGTGCGTTTGTGATGGGCGTTCTGTTTCCCAAAGGGCATTT-TGCAGACGCGA 1027
Query 947 TTGTGGAGAAGATTGAAGATCTTGTAATGGGTCTTCTTCTACCACTGTACTTCGTTATGA 1006
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1028 TTGTGGAGAAGATTGAAGATCTCGTAATGGGTCTTCTTCTACCATTGTACTTCGTTATGA 1087
Query 1007 GCGGTTTGAAAACGGATATAACTACGATTCAAGGTGTGAAATCGTGGGGACGACTCGCGT 1066
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GCGGTTTGAAAACGGATATAACTACGATTCAAGGTGTGAAATCGTGGGGACGACTCGCGC 1147
Query 1067 TGGTGATTGTTACGGCTTGTTTTGGCAAAATCGTTGGGACTGTGAGTGTTGCCTTGTTAT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TGGTGATTGTTACGGCTTGTTTTGGCAAAATCGTTGGGACTGTGAGTGTTGCCTTGTTAT 1207
Query 1127 GCAAGGTAAGGCTCCGTGAATCGGTTGTTCTTGGGGTTTTAATGAACACAAAGGGTTTAG 1186
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GCAAGGTAGGGCTTCGTGAATCGGTTGTTCTTGGGGTTTTAATGAACACAAAGGGTTTAG 1267
Query 1187 TGGAGCTAATTGTTCTCAACATTGGCAAAGACAGAAAGGTTTTGAGCGATCAGACTTTTG 1246
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1268 TGGAGCTAATTGTTCTCAACATTGGCAAAGACAGAAAGGTTTTGAGCGACCAGACTTTTG 1327
Query 1247 CAATTATGGTTCTCATGGCGATATTCACAACATTCATCACAACGCCAATAGTCTTGGCGT 1306
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||
Sbjct 1328 CAATTATGGTTCTCATGGCGATATTCACCACATTCATCACAACTCCAATAGTGTTGGGGT 1387
Query 1307 TATACAAACCAAGCGAGACAACACAAACACATAGTAGCGTCAGCTACAA------GAACC 1360
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1388 TATACAAACCAAGCGAGACAACGCAAACGCATAGTAGCGTCAGCTACAACTACAAGAACC 1447
Query 1361 GCAAACATAGACGCAAGATTGAGAATGATGAAGAAGGCGAGAAGATGCAGCAGCTTAAGG 1420
||||| ||||||| || |||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 1448 GCAAATATAGACGGAAAATTGAGAATGATGACGAAGGCGAGAAAACGCAGCAGCTTAAGG 1507
Query 1421 TTTTGGTATGTCTTCAAAGCAGTAAAGATATTGATCCCATGATGAAAATAATGGAAGCTA 1480
||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 1508 TTTTGGTATGTCTTCAAAGCAGTAAAGATATTGATCCGATGATGAAGGTAATTGAAGCTA 1567
Query 1481 CTCGTGGAAGCAACGAAACCAAAGAAAGATTTTGCGTTTACGTTATGCATTTAACTCAAC 1540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1568 CTCGTGGAAGCAACGAAACCAAGGAAAGATTTTGCGTTTACGTTATGCATTTAACTCAAC 1627
Query 1541 TCTCCGAGAGACCTTCTTCTATTCGAATGGTTCAAAAGGTGAGAAGCAACGGTTTGCCCT 1600
|||| |||||||||||||| ||||||||||||||||||| |||||| |||||| ||||||
Sbjct 1628 TCTCGGAGAGACCTTCTTCCATTCGAATGGTTCAAAAGGCGAGAAGAAACGGTGTGCCCT 1687
Query 1601 TTTGGAACAAGAAAAGAGAGAATTCTAGTGCCGTTACGGTCGCGTTCGAGGCGTCTAGTA 1660
||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1688 TTTGGAACAAGAAAAGAGAGACCTCTAGTGCGGTTACGGTCGCGTTCGAGGCCTCTAGTA 1747
Query 1661 AGCTAAGTAGCGT-TTCGGTGCGTTCTGTGACCGCGATTTCACCGTTGTCAACAATTCAT 1719
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 AGCTAAGTAGCGTCTT-GGTGCGTTCTGTGACCGCGATTTCACCGTTGTCAACAATTCAT 1806
Query 1720 GAGGATATATGTAGCTCTGCTGATAGTAAATGCACAGCGTTTGTGATTTTGCCGTTCCAT 1779
||||||||||||| ||| || ||||||||| || || ||||||||||||||||||| |||
Sbjct 1807 GAGGATATATGTAACTCAGCAGATAGTAAACGCGCAACGTTTGTGATTTTGCCGTTTCAT 1866
Query 1780 AAGCAATGGAGATCTCTGGAGAA-AGAATTTGAAACGGTGAGATCGGAGTATCAGGGGAT 1838
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1867 AAGCAATGGAGATCTCTGGA-AAGAGAATTTGAAACGGTGAGATCGGAGTATCAGGGGAT 1925
Query 1839 TAACAAAAGAGTTCTTGAGAATTCACCGTGTTCTGTTGGAATTTTGGTTGATCGTGGTCT 1898
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1926 TAACAAAAGAGTTCTTGAGAACTCACCGTGTTCTGTAGGAATTTTGGTTGATCGTGGTCT 1985
Query 1899 CGGCGACAACAATTCTCCGGTAGCTTCGAGCAACTTTTCACTTTCCGTCAATGTTCTGTT 1958
|||||||||||||| | ||| | | |||||| ||||||||||||||||||||
Sbjct 1986 TGGCGACAACAATTC---G--AGC----A--A-CTTTTCGCTTTCCGTCAATGTTCTGTT 2033
Query 1959 CTTTGGCGGTTGCGATGATCGTGAAGCTTTGGTTTACGGGTTACGAATGGCTGAACATCC 2018
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2034 CTTTGGCGGTTGCGATGATCGTGAAGCTTTGGTTTACGGGTTACGAATGGCAGAACATCC 2093
Query 2019 GGGCGTTAACTTGACCGTTGTGGTTATCTCTGGTCCGGAGAGCGCAAGGTTTGATAGGCT 2078
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 2094 GGGCGTTAACTTGACCGTTGTGGTTATCTCTGGTCCGGAGAGATCAAGATTTGATATACT 2153
Query 2079 TGAAGCGCAAGAAACATCACTATGTTCCTTAGACGAGCAATTCCTTG-CAGCAATCAAGA 2137
||||||||||||||||||||||| ||| |||||||||||||||||| | |||| |||||
Sbjct 2154 TGAAGCGCAAGAAACATCACTATTTTCGGTAGACGAGCAATTCCTTGTC-GCAACCAAGA 2212
Query 2138 AAAGGGCCAATGCAGCTAGATTTGAAGAGAGGACGGTGAATTCAACGGAGGAAGTGGTTG 2197
|||||||||||||| | ||||||||||||||||||||| | || ||||||||||||||||
Sbjct 2213 AAAGGGCCAATGCAACAAGATTTGAAGAGAGGACGGTGGAGTCGACGGAGGAAGTGGTTG 2272
Query 2198 AGATTATCCGCCAATTTTACGAGTGCGATATTTTATTGGTGGGAAAATCTTCCAAAGGAC 2257
|||||||| || |||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 2273 AGATTATCAGCAAATTTTGCGAGTGCGATATTTTATTGGTCGGAAGATCTTCCAAAGGAA 2332
Query 2258 CTATGGTTTCAAGATTACCGGTTATGAAGATAGAGTGTCCAGAACTGGGACCGGTCGGAA 2317
||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 2333 CTATGGTTTCAAGATTAACGGTTATGAAGATAGAGTGTCCGGAACTTGGATCGGTCGGAA 2392
Query 2318 ACTTGATCGTGTCAAATGAGATTTCTACTTCAGTGTCTGTTTTGGTGGTTCAACAATACA 2377
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2393 ACTTGATCGTGTCAAATGAGATTTCTACTTCAGTGTCTGTTTTGGTGGTTCAACAGTACA 2452
Query 2378 CCGGGAAAGGTCCTTCTGTGGTGGGTTCCGTCTCTGTCCCGGTGGTGGAGACGCCATGA 2436
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 CCGCGAAAAGTCCTTCTGTGGTGGGTTCCGTCTCTGTCCCGGTGGTGGAGACGCCATGA 2511
Score = 390 bits (211), Expect = 2e-107
Identities = 217/220 (99%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 1 ATGGGTACTTTGGTCAACGGTACTATTCCGGCGATGAAGTGTCCCAAGAATGTGGCGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTACTTTGGTCAACGGTACTATTCCGGCGATGAAGTGTCCCAAGAATGTGGCGATG 60
Query 61 ATGAAGACAACGTCTAACGGAGTGTTCGATGGAGAGAGTCCATTAGATTTCGCTTTTCCT 120
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGAAGGCAACGTCCAACGGAGTGTTCGATGGAGAGAGTCCATTAGATTTCGCTTTTCCT 120
Query 121 CTTGTCATTCTTCAGATTTGCCTTGTCGTCGCCGTCACTCGCTCTTTGGCCTTCCTTCTC 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTGTCATTCTTCAGATTTGCCTCGTCGTCGCCGTCACTCGCTCTTTGGCCTTCCTTCTC 180
Query 181 CGTCCCATGAGACAACCACGTGTTGTCGCCGAGATCATTG 220
||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCCCATGAGACAACCACGTGTTGTCGCCGAGATCATTG 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91797490450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5